Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                         <---------At4g35610                                                     <---                         --------->At4g35610     --------->ZAT2              <-------TEIL        ----                       <-----------RAV1(2)       --------->At4g35610  <------ZmHOX2a(1)         -----            <---------YAB1               ----------->GT1           --------->At4g35610    --------->ZAT6 ---------->DOF2     <-----------HVH21   <---------MYB46(3)     <---------YAB1      ----------->GT1 ------ZmHOX2a(1)<------ZmHOX2a(1)      <---------TOE2(3)   <----------DOF2 --------->GLK1(2)  <-----   gaggaaagaagactatgaaggagcgtcagaagagaaggcatggaggttactagctgaagtttctttatcagaggagagattcagagaagttaacactatg  22388800                                                                                            ---------                                                                                            ---------                                                                               <------NtERF2<--------                                                                               --------->ZAT2 -------YAB1                                                                   <---------At4g35610 ------ARR11(3)                            --------->ALFIN1                    --------->At4g35610 ----->ARR11(3)                      >>>>>>>>>TBF1           --------->ARR14(2)<---------ZAT2 ---->YAB1                        >>>>>>>>>TBF1         --------->At4g35610 --------->ATERF1(1) ----YAB1                      >>>>>>>>>TBF1 <------ZmHOX2a(1)              <------NtERF2   <--------   atatttgatgccatcggttttagtagtcacgaagaagaagaagaagaggagcttgaagagcagaattcgatgaatggtggcagcttcacaatagtgcatt  22388900                                                               <-----------RAV1(1)                                                               ------->GAMYB ------>ZmHOX2a(1)                               --------->ANAC58   <------NtERF2 >ZAT18                                          --------->ANAC58 <---------ETT(2)          --------- >ZAT14                                        ---------->DOF2<------------AtMYB77  <---------ANAC58 -ZAT14                              <----------DOF2        --------->MYB52(1)      <---------ANAC58 -ZAT18 ---------->DOF2              <---------DAG2      --------->YAB1        <---------AtLEC2     <   gtccttcagtgaaagaagaggctgtctctaattgaggcgctttataactaaaagcaaaaacataactgtcgtcgtgattttgcataacttgtgtttgaca  22389000                                                        <---------DAG2                                             <----------DOF2                                         <---------ANAC58                                         <---------ANAC55(1)                                         <---------ANAC46                                         <---------ANAC55(2)      <------------------------ANAC81    <---------ANAC58 <---------At5g28300 <----------DOF2     --------->ANAC55(2)         --------->AHL20(2) -->HVH21 ---------->ID1               <-----------GT1 --------->HSFB2a(1)                   <------- -----------GT1   <-----------GT1 <----------DOF2     ------->TEIL   <---------AHL20(2)      --------   ttttactgttttgtagtttttttcttttcttcttggctttgttacgtctttgttcgaaccttttgaatcaataaaatcgaaatcgcctaattcaaaaaat  22389100                                                                                             --------                                                                                             <-------                                                                                          -----------         <---------ZAT6                             <----------ID1                        -----------   --------->ZAT6                           ----------->GT1                         <---------AHL20(2) <-----------GT1                   ------------------------>ANAC81                 --------->AHL20(2) --AHL20(2)            ---------->DOF2    ---------->DOF2                ------>ZmHOX2a(1)<---------- ->AHL20(2)  ---------->DOF2  ------------------------>ANAC81        --------->ARR11(3)  <-----------   tagttactctagtcttaaagatggacaaagagaagaaacagaagaaaagaaaaaaaaacaaatttcataaaaatcctgtattagatttatttgcatattt  22389200         XXXXXXXXXXXXXXXXXXXX>MIR2934       <----------DOF2  <---------HSFB2a(1)                                                                             ---  <---------HSFC1(2)                                                                              ---  --------->HSFB2a(1)                                                              <------ZmHOX2a(2) ->ARR14(2)                                                                       --------->AGP1  <-- --ARR14(2)                                                                       <---------ARR14(2) ------>AGL1                          <----------DOF2                             --------->ARR14(2) ---->AGL15           --------->HSFB2a(2)                                <----------DOF2          <-- -----AGL15           <---------HSFB2a(2)                      ---------->ID1    --------->At4g35610- ------AGL2--------->AtLEC2    >>>>>>>>>TBF1  *TSS         <----------DOF2<---------MYB52(1)      ---   gggaaccctctttatgcaaaccctctagacgaagaagaagcttttgtaacatttgttttttctttggcccttctcctttagtcagatcgacattcttctc  22389300          --------->LBD16        <---------LBD16     ----------->HVH21    <-----------HVH21   --------->bZIP60(1) ------>NtERF2                                           <----------DOF2 ------>ZAT2 <---------GLK1(1)                --------->ARR11(3)            <---------DOF5.7(2) ------>At4g35610                             <---------ARR14(2)           --------->ARR14(2) -------ZAT2 --------->GLK1(1)                <---------ARR11(3)           <---------ARR14(2) -------At4g35610                             --------->ARR14(2)        <---------ANAC46--------->At4g35610 -------->RAP2.6(2)                           <---------ARR11(1)        <---------ANAC55(2)   <------ -------->RAV1(2)                            <---------CCA1(2)  <----------DOF2         <---------At4g35610   agctgccatcaccggagttctgagacttggatacttcaacaatttccatatctctcaagcttttagcttttctcgcgtaaacgcttcttcatctccatct  22389400                            <---------ANAC46                           ---------->ID1  --------->ZAT14                 <---------AHL20(2)        <---------ZAT14                               --------->LBD16                 --------->AHL20(2)    <-----------GT1                                  --------->HSFB2a(2)           --------->YAB1<-----------RAV1(1)  ------>ZmHOX2a(2)            <---------TOE2(3)        <           <---------AHL20(2)         --------->ZAT14       <---------AtLEC2            <---------HSFC1(1) ---CCA1(2)--------->AHL20(2)         <---------ZAT14  <----------DOF2<----------DOF2   <---------HSFB2a(2)   ctcactctctcatttatatttatttgtctgtcgtcttcatttcactgatctgttgaacttttgcatttcattcttttgatgttttggattccagaagtgt  22389500                                                                                            <--------                                                                                            ---------                                                                                            <--------                                          ------>MYB83                                  <---------AHL20(2)                                          ------>MYB46(1)                         <---------At4g35610                                        --------->TOE2(3)----------->GT1   --------->ARR14(2)       <                                        <---------MYB59  <---------ANAC46  <---------ARR14(2)     <--                           ----------->HVH21             <------MYB46(1)<---------TOE1(3)   ---------                 ---------->ID1        ----------------->AG   ---------->DOF2    ------->TEIL<-------             <---------ANAC58          ==============================================================             <---------ANAC58  ---------->DOF2      <-----------RAV1(1) <---------TOE2(3)   ========= ---------AHL20(2)   <----------DOF2  --------->GLK1(2)  <------MYB83<---------MYB52(1) --------->AHL20(2)   ttttattttgtctctgcttgtccctttcgatgacaaagagaacctaattgggttttgttgggtttaaagccgttgaggttttgcatctgttttattaaat  22389600      <---------AtLEC2     <-------TEIL  --------->GLK1(1) -AHL20(2)                                         --------------->AGL15 ------>AGL15                                  --------->ZAT14 -------AGL15                                  <---------ZAT14 ------ZmHOX2a(1)                         <---------At4g35610                                     --- -------TOE2(3)--------->ALFIN1         --------->YAB1          <---------AHL20(2)                <-- >AHL20(2)   <------MYB46(1)      --------->YAB1   <---------------AGL15                  <---------ANAC58 --AHL20(2)  <------MYB83      --------->WOX13(1) <-----------------AGL1   <-------TEIL   <---------ANAC46 =======MADS_MADS      --------->AHL20(2) --------->At4g35610   --------->AHL20(2)        <---------ANAC58 ==================================================================MADS_MADS        <---------AHL20(2)   aaggaaatgcatggaaggtgttcgataaaatgccaattacaatcagcagtttactactatgggcattttaatccaaattcattcatttttttgtgtgttt  22389700  Previous    Next  AGI:  At5g55120.1    Description:  VTC5; galactose-1-phosphate guanylyltransferase (GDP). similar to VTC2 (VITAMIN C DEFECTIVE 2) [Arabidopsis thaliana] (TAIR:AT4G26850.1); similar to VTC2-like protein [Actinidia chinensis] (GB:ABP65665.1); contains domain PTHR20884 (PTHR20884); contains domain PTHR20884:SF3 (PTHR20884:SF3) Range:  from: 22386321    to: 22389093    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g55125.1    Description:  similar to hypothetical protein OsI_035046 [Oryza sativa (indica cultivar-group)] (GB:EAY81087.1); similar to hypothetical protein LOC_Os11g31650 [Oryza sativa (japonica cultivar-group)] (GB:ABA93933.1) Range:  from: 22389246    to: 22390435    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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