Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <-------TEIL                                 --------->At4g35610    --------->ANAC58           --------->ICU4                             --------->ANAC58           ----------->GT1          --------->YAB1                             --------->ANAC58           --------->ANAC58         <---------ICU4   <---------ICU4           --------->YAB1     <---------GLK1(2)           --------->ANAC58 --->TOE1(2)             --------->YAB1      <---------YAB1                --------->ANAC58 ------->AtSPL3        --------->AHL20(1)    <---------TOE2(3)           ---------->DOF2 ------->AtSPL8        --------->AHL20(2)    <---------TOE1(3)     <---------ATHB12<---------YAB1  <- --------AtSPL8       --------->YAB1     <---------ANAC55(2)     --------->YAB1 --------->ICU4    ---   actaatatttagcaacgattttaaaaataataagcatctcaatacttaagattatctcaagtaaaactaataatccaaagccatgatgattcatatgaag  22332500                                                         ------->PIF5                                                      <---------ALFIN1                                                     <---------ZAT18                                                     <---------ZAT14                                                 --------->AtMYB61                                                 <---------ALFIN1                                                 ------->GAMYB                                                <---------ABI4(2)                                                <---------MYB52(2)                                                --------->MYB46(3)                                                <---------MYB55(2)                                             <---------MYB111(2)                            <--------                                             --------->MYB46(3)                     --------->YAB1                                            --------->At4g35610                     --------->TOE2(3)           --------->ANAC58                --------->ANAC58                         --------->TOE1(3)           --------->ANAC58                --------->ANAC58                     --------->MYB46(3)  -      --------->ANAC46                     --------->ANAC46                   <---------HSFB2a(2)<---     --------->MYB46(3)                 -------->P --------->ANAC46           --------->HSFB2a(2)<---   <---------ZAT18            ------>ZmHOX2a(2)-------->P<-------PIF5--------->ANAC46      --------->AHL20(2) --------ALFIN1 --------->ANAC58    --------->ANAC58 --------->ZAT14 --------->bZIP60(2)   <---------AHL20(2) ------>ZAT18   --------->ANAC58    --------->ANAC58--------->DEAR3(1)<-----------HVH21--------->AHL20(2)   cccactgcccaccaaggcaagccaaatgtcgatctctctcgctaccagcaaccaccgcacttgcctcgtccatgtcacttccacaaccataaattttttt  22332600                                             <---------TOE2(3)                                            --------->MYB52(1)                                          --------->DOF5.7(2)                                         --------->TOE2(3)                                        <---------ICU4            <---------AHL20(2)          --------->YAB1            --------->AHL20(2)          --------->ATHB12                        --------->DAG2      --------->ANAC58        --------->AHL20(2)                               ---------->DOF2      --------->ANAC58    <---------AHL20(2)<---------DOF5.7(2)            <---------TOE2(3)  <---------ALFIN1       --------->AHL20(2) <-----------GT1            --------->YAB1 <------NtERF2      --------->AHL20(2) <---------ATHB12             <----------DOF2                 - -AHL20(2)  --------->AHL20(1)<---------AHL20(2)                    --------->TOE1(3)             --- ----->NtERF2     --------->AHL20(2)   --------->ICU4               <---------------AGL15   --------- ------ANAC58    --------->YAB1       <---------ARR11(3)            --------------->AGL15 <---------LBD16 ------ANAC58   --------->AHL20(2)--------->YAB1    ---------->DOF2 --------->TOE2(3)   <---------ARR14(2)   ggtgccactcgaaataaaataaaaatataaaatttatcaaaatcattaacgatttaaagcaaaattctaactttaataagataaagctacaatccggaga  22332700                      <-----------GT1                                <-------MYC3                   <---------ARR14(2)                                ------->MYC3           ---------         <----------DOF2                                            --------->ANAC46   --------->YAB1 ---------->GT1    --------->ARR14(2)                          <-----------GT1  ----------->GT1 -------->GT1<-----------GT1                     <-----------GT1   <---------LBD16    <---------ATHB12 >LBD16  --------->TOE2(3)                ----------->GT1 <----------DOF2      <---------TOE2(3)   tggtgaaaaaactttaatccatattcacattgtaagtttttctatggaaaatcacttcttctttttttccacgcggtttcaaaggttaatcataaaaaga  22332800                                                                                            ---------                                                                                    <---------AHL20(2)                           <---------YAB1                                       --------->AHL20(2)                      ------->TEIL                                              <---------AHL20(2)  -              <---------DAG2--------->YAB1                           --------->ARR11(3)    <---------AHL20(2)      ---------->DOF2<---------CCA1(2)          <------------CBF     <---------ARR11(3)  ----------->TBP ->DOF2       <----------DOF2          <-----------TBP              <---------CCA1(2)  ----------->TBP   gtagaagttaaaggaacttttttgtatctattatagtttgtttttatatgtattgtgaccacaaacacatatatctacatatttattttatatataaaga  22332900                 --------->GLK1(1)     --------->GLK1(2)   *TSS                      <----------DOF2     --------->ANAC46   --------->AHL20(2) ->DOF2  --------->MYB52(1)                 <---------YAB1 ------>ZmHOX2a(1)              <---------AHL20(2) ---------->GT1  <---------GLK1(1)         --------->AHL20(2)        --------->AtMYB61   --------->AHL20(2)   gatagataatctaactgagaaatccacttgaagctattcaacaatttttatagctttcttcctctccaaaaccacaccaaaaaaaaaaaaaaaaaatttg  22333000                                                                                            ---------                                                                                     ------->GAMYB---                                                                                    <---------MYB111(1)              -------->P                                                            --------->MYB46(3)             --------->WOX13(1)                                                     <---------MYB111(2)           --------->MYB46(3)                                                       <---------MYB55(2)           <---------ATHB12                                                         <---------MYB52(2)          --------->ANAC46                                                        ----------->RAV1(1)         --------->WOX13(1)                                                      <xxxxxxxxxxxxxxxxxxx      <------ZmHOX2a(2)                                                         --------->At4g35610<-     <---------ARR14(2)                                                   ---------->DOF2   ---------     --------->AGP1 --------->CCA1(2)                               --------->ARR11(3)  ------->GAMYB     --------->ARR14(2)                   ----------->RAV1(1)       <---------ARR11(3)  --------->AtMYB61    --------->At4g35610                --------->YAB1               <---------ARR14(2) --------->MYB46(3)    <---------At4g35610             --------->YAB1                  --------->ARR14(2)-------->P  ===   attttcagatccaatcaaccagagatgagagataacaacaataacaacacaagagaagaagagagaagcagttcttcaaagcagcaacaaccacaagctc  22333100                                                                                                   --                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                        --------->GLK1(2)                                                                                     --------->ANAC46            <------ZmHOX2a(2)                                                        --------->ANAC58            <---------YAB1                          --------->ALFIN1                 --------->ANAC58    <----------DOF2                                 <-----------RAV1(1)           --------->MYB46(3) >ANAC58   --------->ARR11(3)                 ------>ZmHOX2a(1)             --------->ZAT6     <----- --->ZmHOX2a(1)                           <---------ARR14(2)             ------->GAMYB  ------->TEIL xxsmallRNA(fl3)                          --------->ARR14(2)            <------------AtMYB77 -------- --------TOE1(2)    <-------TEIL        <---------MYB46(3)        ----------->GT1-------->P  ------>MYB46(1) >ANAC58   <---------ARR11(3)          --------->ALFIN1      ------->GAMYB<-----------HVH21  ------>MYB83 ==================HOX2a_HOX2a       --------->ALFIN1       --------->MYB46(3)<---------MYB52(2) ----   ctatgtctttgaagatcatagattcatgtctcagactaagtgtggttcctctcagtgttgcaaccatctggttaactgtcactaaccacgaatccaaccc  22333200                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                              -------                                                                                              <------                                                                                           <---------AHL20(2)                                                                                           <--------HAHB4                                                                                           --------->ATHB51                                                                                           <---------ICU4                                                                                           --------->YAB1                                                                                           -------->HAHB4                                                                                           -------->ATHB1                                                                                          --------->ICU4                                                                                          <---------ATHB51                                                                                          <---------YAB1                           <---------ICU4                                               --------->YAB1                           --------->ATHB12          <----------DOF2                    <---------ICU4 ------->SPL7             <---------ATHB12     --------->ARR14(2)    <---------DAG2    <---------YAB1 ----LBD16   <---------------AtSPL8   --------->ANAC58    <----------DOF2              <---------AHL20(2) >P--------->ANAC46      <-----------HVH21     <---------ARR14(2)    <----------DOF2<---------AHL20(2) ----->LBD16 --------------->AtSPL8   --------->ANAC58 <-----------GT1         --------->ICU4<-------   ggactacggcaatttagagtacaactccatcatgggtctcaagtaaacatatactctttactttctttcaactttttagtaagtattttataattattaa  22333300                                          <---------ARR14(2)                                          <---------ARR11(3)                                          --------->ARR14(2)                              <---------ANAC46                              <---------ANAC58                            <------MYB46(1)                            <------MYB83  <---------ARR11(1)                           --------->MYB111(2)                           --------->MYB46(2)                           --------->MYB55(2)                           <---------MYB46(3)      --------->YAB1       <---------AtMYB61   ----------->GT1         --------->MYB111(1) -------AHL20(2)           <---------DEAR3(1) ------>AHL20(2)          <---------MYB55(1) -------AHL20(1)          <--------P --------->ZAT18 ------>AHL20(1) <------MYB83 <---------ANAC58              --------->At4g35610 -->AHL20(2)     <------MYB46(1)  <---------ANAC58          --------->ZAT14 ---AHL20(2)    <---------TOE1(2) <---------ANAC58----------------------->TaNAC69(2)  --------->ANAC55(2) --YAB1 <---------YAB1  --------->ATHB12 <---------CCA1(2)  <---------At4g35610   <-----------HVH21 -   ttaattagttataatttgtaggtatatggttggtgtgagtgccatatctgctatttatgctctgctctctactgtttcttcatgggtcacatgtttagtc  22333400  Previous    Next  AGI:  At5g54980.1    Description:  integral membrane family protein. Identical to UPF0497 membrane protein At5g54980 [Arabidopsis Thaliana] (GB:Q9FFT2); similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT1G17200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38943.1); contains InterPro domain Conserved hypothetical protein CHP01569, trans-membrane plant (InterPro:IPR006459); contains InterPro domain Protein of unknown function DUF588 (InterPro:IPR006702) Range:  from: 22332925    to: 22333827    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version