Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------YAB1                                                        --------->ICU4                                                      --------->YAB1                                                     --------->ICU4                                                --------->bZIP60(1)                         ---------              <---------ATHB12                  <---------bZIP60(1)                        ----------            --------->WOX13(1)               <------ZmHOX2a(2)                          --------->ANAC58           <---------AHL20(2)               <---------ARR11(3)                          --------->ANAC58     ----------->RAV1(1)                    --------->ARR11(3)                       --------->TOE2(2)    --------->MYB46(3)                 ------>MYB46(1)<---------ICU4                 --------->TOE1(2) ------DOF2--------->AHL20(2)          ------>MYB83  <---------YAB1    <-----------GT1  --------->ANAC46   ttatcaacaacaattaatcaagaacagagcatgacttaaccaaatagatcatgtcatcatgatgttcaacatataactagattataacatacgaaaagtc  22326200                                                                      <---------AHL20(1)                                                                      --------->AHL20(1)                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                                                                     <---------ATHB12                                                              ----------->HVH21                                                            --------->At4g35610                                          --------->TOE2(3) <---------At4g35610      ================                   <------ZmHOX2a(2)      --------->YAB1 ---------->DOF2             <------ZmHOX2a(1) >DAG2   --------->WOX13(1)<---------ARR11(3)         --------->TOE2(3)    --------->ATHB12 >DOF2 <------ZmHOX2a(2)   --------->ARR11(3)         --------->TOE1(3)   --------->ICU4   cctatatagatcaattactggatcatggatatattcgaattcaatctcaatccaaaccctaaagctgaccaataaaatgatttgagaggagacaatccaa  22326300                                  --------->AHL20(2)                                <---------ANAC55(2)                                ----------->GT1                                --------->ANAC58                                --------->ANAC58                             <---------ATHB12                     --------->TOE2(3)                      <-------TEIL                     --------->TOE1(3)                     --------->ARR14(1)                     --------->YAB1 --------->WOX13(1)     --------->CCA1(2)     <------ZmHOX2a(2)     --------->WOX13(1)  <----------DOF2 <---------MYB52(1)              ------ ===========HOX2a_HOX2a --------->YAB1<---------ATHB12     --------->GLK1(2)    --------->AHL20(2)   aatttagatcaaacttctcaaaaccataacaatcaagtaaatcaattcgctttaatatgagattcgatagtttatgcagagattatatccaaatcacaca  22326400                                        --------->ARR14(2)                                        <---------ARR14(2)    <---------MYB52(2)                                        ------>MYB83  --------->ANAC58                                        ------>MYB46(1)       --------->MYB46(3)                                       --------->WOX13(1)   --------->MYB52(1)                                 --------->YAB1       --------->ANAC46                            ---                         --------->ANAC58    --------->ARR14(2)    ---------->DOF2    --------->TOE1(3)    --------->TOE1(3)    --------->ANAC58    <---------ARR14(2)------->GAMYB          --------->TOE2(3) --->ANAC46--------->CCA1(2)   <---------ARR11(3)     --------->ANAC58   ---------->DOF2 ---------->DOF2   tcaaaaccataagataagaaaaacagaacgcaaaatcataccaatccgattcgaaaacgaaacaacgaacaaagagaaagcttcaaaaccctaaatcgaa  22326500                                         ------->GAMYB                                        --------->ANAC46                                        --------->ANAC58                                        --------->ANAC58                                       <---------------------WRI1              <---------ATHB12        --------->MYB52(1)             --------->ANAC58    --------->MYB46(3)             --------->ANAC58    <---------MYB52(2)            ---------->DOF2     <---------TOE1(3)            --------->WOX13(1)<----------ID1               ---------->DOF2    ----------->RAV1(2) --------->ZAT6   <---------ATHB12 --------->ANAC46 --------->ARR14(2)       ------->TEIL ------>AHL20(2)--------->WOX13(1)------->GAMYB <------ZmHOX2a(2) <----------ID1----------->HVH21   ttaaaactagagagcaatcaatcaaacagagaacaacaaacaacgaaacgatcaaatctacaaaagaaagaacaaatcgtacctgaaggttttgttcgat  22326600                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                           <---------                                                                                        ------>ZmHOX2a(2)                                                                                       <------ZmHOX2a(2)                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)                                                             <---------AHL20(2)       <---------ARR11(3)                                                  <------MYB83                        --------->ARR11(3)                                                  <------MYB46(1)                     --------->AGP1                                                  <---------HSFB2a(1)            --------->TOE2(3)                                                  --------->HSFB2a(1)           <---------YAB1                                             <---------TOE1(3)       <----------DOF2  <---------AGP1                                     ---------->DOF2       <-----------TBP    <-----------GT1       -                                  >>>>>>>>>TBF1<------ZmHOX2a(1)  --------->ARR11(3) <---------CCA1(2)   <----------DOF2                *TSS       <---------TOE2(3)    <---------ARR11(3)----------->ARR10   ggagtctttggagtttttgttaattcaattgatgaagaagaaagcttaaggaaggttttgtatttatagaccttttttttttaccatagatcttcttttt  22326700          --------->TOE2(3)   --------->At4g35610                    --------->ALFIN1   <---------At4g35610                   <-------MYC3   <------NtERF2                         ------->MYC3  <<<<<<<<<AtERF-3                       <-------MYC2  <<<<<<<<<AtERF-1                       ------->MYC2  <<<<<<<<<AtERF-2                       <-------PIF5  <---------RAP2.3(1)             <---------HSFB2a(2)  <<<<<<<<<AtERF-4                --------->HSFB2a(2)  ------>NtERF2                   --------->HSFC1(1)  <---------ERF1               <-----------GT1  <<<<<<<<<AtERF-5          <---------AHL20(2) <---------ANAC46      ------>ZmHOX2a(2) <-------MYC4 <---------RAP2.3(2)  <------ZmHOX2a(2)  ------->PIF5 <---------RAP2.6(2) <---------ARR11(3)  ------->MYC4 <---------RAP2.3(3) <---------AGP1     --------->O2                           --------->HSFB2a(1) <---------DEAR3(1)  --------->ARR11(3) <---------ANAC55(2)                    <---------HSFB2a(1) --DOF2 <---------ARR11(3)<---------YAB1<---------ANAC46                       <------MYB83 ------>AGL15        <---------ARR14(2) <---------TGA1a                        <------MYB46(1) -------AGL15        --------->AGP1     <---------O2                          <---------AtMYB61 --------AGL3    --------->LBD16  <---------HSFC1(1)                    --------->ALFIN1        ----- -------->RAP2.6(3) <---------CCA1(2)   --------->TGA1a            ----------------->AGL1    --------   atggcggctaaatcttagccgtagatctattattttctagacacgtggatggataagttcgaattagtgaccaagtggggaaggtttcacgtttagaata  22326800                                                                     <--------P                                                                    --------->REM1(2)                                                                 <---------ANAC58                                                                 <---------ANAC58                                                                 <---------ANAC46                   -                                                              <---------ARR14(2)                   --                       <-----------GT1                        --------->ARR14(2)                 ====                   <--------HAHB4                            <---------CCA1(2)               ========         --------->ANAC58     <---------AHL20(2)  --------->ANAC58  --------->ZAT14          --------  <---------ANAC58 --------->YAB1    <---------ANAC58        --------->GLK1(1)              <--------  <---------ANAC46 <---------ICU4    <---------ANAC58        <---------GLK1(1)            <---------YAB1  <---------ANAC58--------->AHL20(2) <---------ANAC46      --------->YAB1 ----------------->AGL2 ---- ---->MYB52(1)    --------->ICU4 <----------DOF2  --------->ANAC46 --------->ALFIN1    --------->AHL20(2) ->YAB1  --------->ANAC58     <-----------GT1     --------->ANAC58--------->LBD16      --------->ICU4   actggtgtgagacgcagagaataattatctattttctttgcgtataatggacgcgcaactctcatatccgtgtaggcccattaagagcatttattaaaag  22326900                           <---------ATHB12                     --------->TCP15(1)                     --------->TCP20                     <---------PCF2                    <------MYB46(1)                                                --------->ARR14(2)                  --------->ALFIN1                                                 --------->ARR11(3)                --------->O2                      --------->HSFB2a(2)              <---------ARR11(3) --------->ARR11(3) <------MYB83               --------->GLK1(2)                   <---------ARR14(2) <---------ARR11(3)<---------MYB46(3)         <---------GLK1(2)     <---------ANAC46      =========== -------->YAB1  <---------TGA1a         <---------HSFB2a(2)         <---------ANAC58      <-------GAMYB --------->GT1  --------->TGA1a         --------->HSFB2a(2)         <---------ANAC58  <-----------RAV1(1) =========================bZIP_DOF     <---------ANAC46             <---------ANAC55(2)  <---------MYB46(3) =========================bZIP_DOF     <---------ANAC58             --------->ANAC55(2) <---------AtMYB61 -->DOF2        <---------O2--------->YAB1  ----------->ARR10 <---------YAB1      <---------GLK1(1) -AHL20(2) <-----------------AGL3      <---------ANAC58    --------->ICU4 <---------AHL20(2) ------>DOF2----------->RAV1(1)  <---------ALFIN1 <---------HSFB2a(2)     --------->AHL20(2)    -----   aaagataataagagccacaagtgggtccaataacaacacttgcgagaagaatctcgaagtcaatatgatttcgtattttattcgatatctgtggttgtct  22327000                                                                                     <----------DOF2           --------->O2                                                              <---------DAG2           <---------O2                                                             <---------ANAC58           --------->TGA1a                                                          <---------ANAC58           <---------TGA1a                                                      <---------ANAC58 ---------->DOF2                                                              <-----------GT1 ====================bZIP_DOF      <-------TEIL                     --------->MYB46(3)      <-------- ====================MYC_MYB   <---------YAB1                  <-----------HVH21<---------ANAC58    < ------>HVH21           <---------GLK1(2)<---------YAB1<-----------GT1        <---------AHL20(2)  ---   gacaaaagaagagacgtcttattgcagattgttctgatacattatgttgaaaacgttttacacattgtcactcaccgaatttacttgctttttgatgaag  22327100  Previous    Next  AGI:  At5g54940.1    Description:  eukaryotic translation initiation factor SUI1, putative. similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT5G54760.2); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT4G27130.1); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT5G54760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38954.1); contains InterPro domain Eukaryotic translation initiation factor SUI1; (InterPro:IPR005874); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR001950) Range:  from: 22325497    to: 22326634    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g54950.1    Description:  aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related. similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to putative aconitate hydratase 1 [Sorghum bicolor] (GB:ABE77202.1); contains InterPro domain Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase; (InterPro:IPR015934); contains InterPro domain Aconitase-like core; (InterPro:IPR015937) Range:  from: 22327058    to: 22327468    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version