Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------                                                                                         ============                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                       ------>NtERF2    =============                                                                     ---------->ID1     <------ZmHOX2a(2)                                                                   <-----------GT1      =============               --------->MYB52(1)                              <---------MYB52(1)      <---------ARR14(2)     <---------------AGL15                                    <---------RAP2.6(3)      --------->ARR14(2)     --------------->AGL15          --------->At4g35610      <---------ANAC46          --------->ARR11(3)    ----------------->AGL1          ----------->RAV1(2)      <---------ANAC58          <---------ARR11(3)    <-----------------AG <---------HSFC1(2)                  <---------ANAC58    <----------DOF2  <--    <-----------------AGL1        <---------ALFIN1          <------NtERF2       <---------HSFB2a(1)    ----------------->AG --------->HSFC1(2)                ------>NtERF2  --------------------->WRI1 ---->ID1   --------->ANAC55(2) <---------ALFIN1           --------->ABI4(2)    --------->HSFB2a(1) --DOF2     --------->ANAC46   ------>ZmHOX2a(1)     --------->MYB52(1)<---------RAP2.6(3)    <------   gttttatccgatataggtaactgagcaaacttcctcacacctgcataccgagagaaaacggtgccgtttttgccgtcttcggactttccgatcttcgaat  22318800           --------->ANAC46           --------->ANAC58   <------ZmHOX2a(1) ----ARR14(2) --->ARR14(2)            >>>>>>>>>GATA-3 ----ARR11(1)            >>>>>>>>>GATA-2   <---------ARR14(2) --->GLK1(2)      ---------->DOF2          --------->ARR14(2)            --------->ARR11(3) ->TEIL  <------ZmHOX2a(1)             <---------LBD16                   <---------ARR11(3) ---CCA1(2)--------->ANAC58          --------->ARR14(2)              <---------At4g35610 =========HOX2a_HOX2a    >>>>>>>>>GATA-1  <---------MYB52(1)       <-----------RAV1(2) ===============HOX2a_HOX2a          <---------ARR14(2)    <---------ALFIN1 ===============HOX2a_HOX2a   <---------ARR14(2)          --------->MYB46(3) =========HOX2a_HOX2a    >>>>>>>>>GATA-4 --------->LBD16 <------ZmHOX2a(2) --------DOF2    --------->YAB1   ==============================HOX2a_HOX2a <---------AHL20(2) ---ARR14(1)    <---------ATHB12  ------>ZmHOX2a(1)     --------->ARR14(2) --------->AHL20(2)   ctttaggaagaggacgcaatgaaagtggattgaatcctgaatccggtttctgtgattcgatccactgcttcagaagatttatttcttcgacttcgttgag  22318900                                                                                 <---------At4g35610                                                                                 --------->At4g35610                                                                              ---------->DOF2                                                                         --------->CCA1(2)                                                                        <---------ARR11(3)                                                                        --------->ARR11(1)                                                                      --------->LBD16                                                                     <---------------AGL15                                                                     --------------->AGL15                                                                    <-----------------AG                                                                    ----------------->AGL1            <---------ICU4                                          ----------------->AGL2           ------>ZmHOX2a(1)                                        <-----------------AGL1          --------->TOE2(3)                                         ----------------->AGL3     --------->At4g35610                                            <-----------------AGL3 --------->GLK1(2)                                     --------->ANAC58 <---------ARR14(2) <-----------ARR10                        <---------ICU4         <---------At4g35610 <---------ARR14(2)                 <-----------GT1    --------->ANAC46 --------->ARR14(2) --------->ARR14(2)              <---------ICU4        --------->ANAC58 --------->ARR11(3) ------->TEIL      <---------MYB52(1)<---------At5g28300         --------->At4g35610   acgaatctgcttcctcattcccttagtcttcttaatttttaccatcttgacacaaacacgaagttagagctccagatatggaaagcttacgacttgagag  22319000                                                                           <------------CBF                                             <---------WOX13(1)         ------------>CBF        -----                                        --------->CCA1(2)           <---------At4g35610         -----               --------->At4g35610   <---------TOE2(3)      <---------ARR11(3)              <--------            ---------->DOF2  <---------TOE1(3)    <-------TEIL  <---------REM1(1)       <---------TOE2(3)          ---------->DOF2    <---------TOE2(3)   --------->CCA1(2)  --------->At4g35610 <---------TOE1(3)  <---------GLK1(2)   ---------->DOF2<---------TOE1(3)      --------->ARR11(3)    ----------->GT1  <-   gctagaatttgcaaaagagcagacaaaagttagggttttaagatttgatagatacacaagaagatgttgaagcagccaattgaagggtttaacgatgagt  22319100                                                    ---------->DOF2                                                <-------TEIL                                               --------->CCA1(2)                                              --------->ARR14(2)                                              <---------ARR14(2)                                             <------ZmHOX2a(1)                                           <---------TOE2(3)                  ====================================MADS_MADS           --------->AHL20(2)        ------------>CBF---------->DOF2     <----------DOF2                <-----------------AGL1 ------>HVH21     --------------->AGL15   --------->YAB1          ---------->DOF2 ------>TGA1   <-----------GT1      <-----------------AG       --------->YAB1    ---------->ID1 -YAB1     <---------AHL20(2)       ----------------->AGL1    <---------ATHB12  <-----------GT1 --------bZIP60(2)<---------------AGL15  <---------ATHB12 ------------>CBF<---------AHL20(2)   <-----   gacgatgctttttttaattaccaaaaaaactaatctaggcccaataaggatacacaaaggcccaataacaaagcattttttttttcgcttccctcgtcta  22319200                 <---------GLK1(2)               <---------YAB1         ------>ZmHOX2a(2)                                                                        ---        --------->GLK1(1)                                                                     <------        <---------GLK1(1)                                                                --------->ZAT18       <---------ARR11(3)                                                                <---------ZAT14       <---------ARR14(2)                                                                --------->ZAT14       <---------AGP1--------->HSFB2a(2)                                            <---------ANAC46       --------->ARR14(2)  *TSS                                           <---------AHL20(2)  -------       --------->ARR11(3)--------->ARR14(2)                 --------->TOE1(2)       <---------ANAC58      <---------CCA1(2)  <---------ARR14(2)       <-----------RAV1(1)     --------->AHL20(2)---------   <---------LBD16   <---------HSFB2a(2)       <----------DOF2     <-------TEIL     <---------ANAC58 ----CCA1(2) <---------At4g35610          ---------->ID1<---------ZAT18 --------->AHL20(2)  <--------   tcttctctggatctcttctgattctcgaatccctatttgtcttcgtcttcttttgttgtgaacttgcgatacatatatatatagatgcgagtacaccgga  22319300                                                                                              <------                                                                                             <-------                                                                                           --------->YAB1                                                                                           <---------ICU4                                                                                ------>ZmHOX2a(1)                                                                 ======================HOX2a_HOX2a                                                                 ------>ZmHOX2a(2)        <---------YAB1                                                                <------ZmHOX2a(2)       --------->YAB1 -------->GT1                                                   =======================HOX2a_HOX2a ---ZAT14                                                      --------->ARR11(3)       <---------ICU4 -->ZAT14                                           ----------->GT1  --------->ANAC58  <---------YAB1 >ANAC46                                        --------->ARR11(3)   --------->ANAC58  --------->ICU4 -LBD16            --------->ATHB12       <---------HSFB2a(2)  <---------ARR11(3)  <-----------TGA1   ctgtgaaattttggaacgaattgatttgatttgaatatggcaatcgcgaagaaattggaaaatgagatctcacgctcttctccttcgtcatcatcatcat  22319400                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                        --------->KAN4(2)                                                                                       <---------KAN4(1)                                                                                       --------->HSFB2a(1)                                                                                       --------->GLK1(1)                                                                                       --------->KAN4(1)                                                                                       <----------TaMYB80                                                                                       <---------GLK1(1)                                                                                       <---------HSFB2a(1)                                                                                      <---------KAN4(2)                                                                                      <---------ARR11(3)                                                                                      ---------->TaMYB80                                                       <-------TEIL                   <---------ARR14(2)                                                     <-------MYC2                     --------->ARR11(3)                                                     ------->MYC3                     --------->ARR14(2)                                                     ------->MYC2                  --------->LBD16                                                     <-------MYC3                 --------->HSFB2a(2) ---ICU4      <---------MYB52(1)       --------->At4g35610                        <---------HSFB2a(2) --YAB1------->TEIL            <---------CCA1(2) <-------TEIL                    <---------LBD16   cgctgaacgaagctctgttaatctctactatgtgtatcatcggcttacaagtccatgtgcatatcaacgatggctctgtgttttctgggatattctacac  22319500                                                       <------MYB46(1)                                                       <------MYB83                                                       ----------->GT1                              -                                                      --------->MYB59                               < --ZAT14                      <----------DOF2     --------->ATHB12                                <-- --REM1(2)        <---------------AtSPL3         <---------YAB1                                  <--- ->ZAT14          --------------->AtSPL3<---------TOE2(3)              <-------GAMYB   <----------DOF2   tgtctctcttgagaatgaattcagtacgtttccttttggtttaatgtggttttgatttggtaatttgtgttttcgttgatgaaattggtctttgaatttg  22319600                                       <---------YAB1                               --------->ANAC58                               --------->ANAC58                               --------->ANAC55(2)                               --------->ANAC46                            --------->TOE1(2)                     <---------ATHB12      <------ZmHOX2a(2)    ------>ZmHOX2a(2)                <---------ANAC46      =========================HOX2a_HOX2a                  <---------ANAC58     <---------ARR11(3)   <------ZmHOX2a(2)                 <---------ANAC58     --------->ARR11(3)  <---------ARR11(3)                 ----------->GT1    --------->GLK1(1)    --------->ARR14(2)        --------->ATHB12    <---------GLK1(1)    <-----------ARR10      <---------ANAC55(2)  <------NtERF2          --------->ARR11(3)     --------->ANAC55(2)                 <---------ANAC58 -------->ETT(1)         <---------ARR14(2)<---------ICU4 <---------MYB46(3)        <---------ANAC58 ---------ANAC46        <------ZmHOX2a(1) <---------YAB1 <---------AtMYB61   <-----------GT1 ---------HVH21--------->CCA1(2)    --------->ICU4<---------AHL20(2)   --------->ATHB12 --------RAV1(1)  --------->ATHB12  <---------ATHB51 <---------WOX13(1)--------->YAB1         <------   tgtcggagatcacagagatttgattaggatcttacgaaattatgctcattacttaattggtggtgtgaatcattcattgtaacattgctagttttttttc  22319700  Previous    Next  AGI:  At5g54910.1    Description:  DEAD/DEAH box helicase, putative. Identical to Probable DEAD-box ATP-dependent RNA helicase 32 (RH32) [Arabidopsis Thaliana] (GB:Q9FFT9); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT5G65900.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80934.1); similar to DEAD-box ATP-dependent RNA helicase 32 (GB:Q0D622); similar to unnamed protein product [Vitis vinifera] (GB:CAO38967.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like Range:  from: 22315783    to: 22318945    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g54920.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G26990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82076.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 22319227    to: 22323021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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