Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <-----------GT1                                                                 --------->WOX13(1)      <---------ARR11(3)                   --------->TOE2(3)                            <---------ICU4      --------->AHL20(1)                   --------->YAB1       --------->YAB1         <---------YAB1      --------->ARR11(3)           --------->TOE2(3)       --------->ARR14(2)          <---------ATHB12     --------->AHL20(2)            --------->TOE1(3)--------->ANAC46    ------->TEIL   --------->ICU4   atactaaatatatactgcctcatttttctcttgtcaaccttacagtcttaattcactccaaaatatgcataatgaacatacaaaaactaatcattcaatt  22304500                                                                                                  <--                                                                                            <--------                                                       --------->HSFB2a(1)               --------->AHL20(1)                             ----------->GT1           <---------HSFB2a(1)               <---------ARR11(3)                 <---------AHL20(2)                ----------->GT1                       --------->ARR11(3)  --------->AHL20(2)    <---------YAB1           ---------->DOF2  <---------MYB52(1)     <---------AHL20(2)  <---------AHL20(2)  --------->YAB1         <----------ID1     ----------->GT1          <---------AHL20(1) --------->AHL20(2)  <---------ATHB12      ---------->DOF2     <------------AtMYB77      --------->AHL20(2)   cgatttaattgttctatatttcaatgataaatggtgcaaaaaccaaaaagaaaaagaaaattctaactgttaattgtattgatactcttaatatattaat  22304600                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----           <---------TOE2(3)                                                                    <----        <---------AHL20(2)                                                        ----------->GT1----     <---------ARR11(3)                    <---------At5g28300                   --------->DAG2 -----     --------->ARR11(3)           --------->DAG2      <---------ANAC58       <------ZmHOX2a(1) ------ -------HSFB2a(2)          ----------->GT1<-----------GT1      <-----------GT1  ---------->DOF2<----- -AHL20(2) <---------TOE1(3)     ---------->DOF2      <---------ANAC58     --------->ALFIN1 ------->TEIL   ctcgaaagattttatggtttgagtctgaaatgtaataaagtgttttacagttcatttcgtccaattttcaacttggggaggagaaagtgatatgtatgcc  22304700 ----NtERF2 -->NtERF2 ------RAP2.6(3) ---->ATERF1(2)                                                                             <-------- -----RAP2.6(2)                                                                      <----------DOF2< -----ATERF1(2)                                                                      <---------ANAC58 ----->LBD16                                                       <---------At4g35610      <-------GAMYB ---->RAP2.6(2)----------->GT1                            --------->YAB1     --------->ATHB12      -- --->RAP2.6(3)--------->DAG2   --------->ANAC58 ----------->GT1    --------->At4g35610   <---------ANAC46 ----LBD16   ---------->DOF2   --------->ANAC58 <---------ZAT6    ------->TEIL       <---------ANAC58   ggcaaaaaaaaaaaaaaaagtgaaatgtattggacgaaattagataactagtgttaaaaatagtaatgaagctgaagcttaattgggccttgtgggttat  22304800                                                                                                 <xxx                                                                                                 ----                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <-----                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                               <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <-----------RAV1(1) ----                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <---------PCF2       -------                                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        ----------->HVH21     <xxxxxx                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxx                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxx                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxx                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxx                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->MYB46(3)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxx                                                         <-----------RAV1(2)<xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         ================================RAV <xxxxxxx                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->TCP23                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->TCP15(2)                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->TCP16(2)                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)       <---------TCP11(2)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxx                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxx                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)  <-------GAMYB<xxxxx                                                    <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxx                                                   --------->YAB1       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <---------YAB1      ------>ZmHOX2a(1)  <---------TCP15(1)                                            <---------AHL20(2)        --------->LBD16    <---------TCP16(1)                                            --------->AHL20(2)       --------->TOE1(2)   <---------TCP20                                            --------->AHL20(1)       <---------LBD16     --------->PCF2                                           --------->AHL20(2)        --------->TOE2(2)   <---------PCF2                              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    ----------->RAV1(2)  --------->PCF5                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(s) ----                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     =====================RAV<--------                            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <------ZmHOX2a(2)     <---------PCF5 -ANAC46                   ------------------------>ANAC81<xxxxxxxxxxxxxxxxsmallRNA(s)  <-----------TCP11(1) ---------AHL20(2)         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxx ------->AHL20(2)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ARR14(2)<xxxxxxxxxxxxxxxx   attaaatgggctatgaagttgggaacaaaaaaaaaaaaaaaaaaaaaaaattatcagagccaggtttcgatcctgggacctgtgggttatgggcccacca  22304900         ------>NtERF2        --------->ANAC58        --------->ANAC58       <xxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxsmallRNA(s)       ------>NtERF2      <---------ATERF1(1)      <xxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------DEAR3(1)     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->At4g35610    <---------At4g35610    ----------->RAV1(2)    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxsmallRNA(s) ----->ANAC46 xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----ALFIN1<---------ALFIN1 xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxsmallRNA(se3) ----->ANAC58 -->MYB46(3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxsmallRNA(fl3)                                          <---------AHL20(2)       ----------->RAV1(2) xxxxxxxxxxxxxsmallRNA(se3)                                    <---------ICU4           --------->At4g35610 xxxxsmallRNA(se3)                                          --------->YAB1            <---------LBD16 xxxxsmallRNA(i2)                                        ------>MYB46(1)         <---------ARR14(2) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------ATHB12 --------->AHL20(2)    --------->ARR11(3) xxxxxxxxsmallRNA(se3)           <---------YAB1          ------>MYB83            <---------ARR11(3) ----->ANAC58   <---------YAB1 --------->YAB1       <-----------GT1              --------->ARR14(2) - -ALFIN1--------->ANAC46       <---------ICU4  --------->AHL20(2)               <------ZmHOX2a(1)---- xxxxxsmallRNA(s)             <---------ATHB12 <---------AHL20(2)         ---------->DOF2        ---- xxxxxsmallRNA(i2)     *TSS --------->WOX13(1)--------->AHL20(2)      <---------MYB52(1)<---------At4g35610   cgcttccgctgcgccactctgattttttgttaatcatcatacaaatcatttaattaaccaaataataaatccgtttgaaagaggattttccgctgggact  22305000                                                                                            ---------            --------->DAG2                                                             --------->At5g28300           ---------->DOF2                                                            ----------->GT1   --------->At5g28300                                     <------ZmHOX2a(1)          --------->LBD16  ----------->GT1                                        <---------TOE1(2)          <---------LBD16 -------->SPL7                --------->YAB1             <---------TOE2(2)        --------->ARR14(2) ----->ANAC58                --------->ICU4         --------->GLK1(2)             <---------ARR14(2) ----->ANAC58           --------->YAB1             <---------GLK1(2)     <---------At4g35610<--------   cgcacggtgaataaaaagttcgacgatgaaaatgatgagacgacgataaacaagaatcggaggattacaaaacgctgcttcttaaatccggtaaaaaaat  22305100                                                        --------->AHL20(2)                                                      <---------ANAC55(2)                                                      --------->ANAC55(2)                                                      ----------->GT1                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ANAC58        <---------ANAC58                          --------->YAB1   <---------ANAC46        <---------ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------ANAC58 >AHL20(2)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------ANAC58 -AHL20(2)     ---------->DOF2               <---------YAB1    <---------ANAC58   ggttcttgatgcttatgtaaagttttttttttttttttttttttggtatcaatgttaagtaaattgtttgcgtctatgcttatgtagtagagactcatga  22305200                          --------->DAG2                         ---------->DOF2                        ----------->GT1                     <---------TOE2(3)                         --------->HSFB2a(2)               <---------------AGL15                           <---------HSFB2a(2)               <----------DOF2                            <------MYB83 ----------->GT1           <---               --------------->AGL15                      <------MYB46(1)          ------>MYB46(1)              <---------ANAC58                           <---------AtMYB61         ------>MYB83  <---              <---------ANAC58      --------->ALFIN1     --------->MYB59         <---------MYB59 ----   ---------->DOF2   <---------TOE1(3)                 <---------MYB52(1)     <-----------GT1    ----   gataataaagttttttgcttttgaaggtaaagctagaggtgggcatttcaaaattcggtttggttctggtaatatgttatataccaaattagaacttaat  22305300                  <-----------HVH21                  <-------GAMYB            <------MYB83            <------MYB46(1)           --------->MYB59                                  --------->HSFC1(2)      --------->AHL20(2)                                    --------->HSFB2a(1)                    <-    --------->TOE2(3)                                  ------>MYB46(1)                     <-------TEIL   <---------ANAC55(2)    ---------->DOF2              ------>MYB83                        ------->TEIL --------->AHL20(2)<---------MYB52(1)                --------->TOE1(2)            <---------SPL7   -- ------AHL20(1)  <------MYB83              <---------AHL20(2)                    --------->ETT(1) --- ------AHL20(2)  <------MYB46(1)         <---------ANAC55(2)<---------HSFC1(2)  <------NtERF2     --- ----->AHL20(2) ----------------->AGL1   --------->ANAC55(2)<---------HSFB2a(1)<-----------HVH21 ---- ----->AHL20(1) --------->MYB59  ----------->GT1     --------->TOE2(2)     <---------AtMYB61   ------   aaattacataaatttggttcggttaggggaaagggtagtgaataagtaattgaaacctacgaagtttctaatttgttatggtgtcggaccatgtacataa  22305400  Previous    Next  AGI:  At5g54860.1    Description:  integral membrane transporter family protein. similar to integral membrane transporter family protein [Arabidopsis thaliana] (TAIR:AT1G64890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38987.1); contains InterPro domain Biopterin transport-related protein BT1; (InterPro:IPR004324); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 22301807    to: 22304432    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g54865.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 22304852    to: 22304923    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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