Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <-----------GT1                  ------>ZmHOX2a(2)                 --------->CCA1(2)                 <------ZmHOX2a(2)                                       ------->GAMYB                 --------->ARR14(1)  --------->LBD16                    --------->ANAC58                --------->ARR11(3)  --------->ANAC58                    --------->ANAC46                <---------ARR11(3)  --------->ANAC46                 <---------ALFIN1                --------->ARR14(2)  --------->ANAC58           ------->GAMYB                --------->AGP1     ------->GAMYB              --------->MYB46(3)                <---------ARR14(2) <---------LBD16   --------->REM1(1)  --------->ANAC58        <---------ATHB12     --------->YAB1     --------->ANAC58   --------->ANAC46  --------->ARR14(2)    <----------DOF2         --------->ZAT6<---------MYB55(2)  <---------ARR14(2)    <---------DAG2          --------->ANAC58  --------->MYB46(3)              --- <---------GLK1(1)--------------->AtSPL3  <---------ATHB12    <---------MYB52(2)                 <--- ---->YAB1    ----------->ARR10  -------->P--------->YAB1     --------->DEAR3(1)           <---------   aacatatcccatcaacaagatccgaactttatcacaacccgcaaatgataacgctacaattccaacgacccacaacgcaaaatgtctcatttttatctaa  22283600                                      <------NtERF2                                   <-------GAMYB                                  <---------DEAR3(2)                                 <---------At1g77200                                 <---------DEAR3(1)                          <---------ATHB12                        --------->GLK1(1)                        <---------GLK1(1)                   <---------LBD16<---------MYB46(3)                   --------------------->WRI1                                     --------->MYB52(1)           --------->ARR11(3)    <---------DREB2C(2)                          <-------TEIL<---------- ------>YAB1      ----------->RAV1(2)------>NtERF2       --------->ARR14(2)<---------ANAC46 ------ATHB12    -------->P--------->YAB1                <---------ARR14(2)<---------ANAC58    <----- --GT1     <---------ARR11(3)  <-----------HVH21  ---------->DOF2          <---------ANAC58<---------   tcacgaagaacaaggtctctacctggaaatcatcgtcggtggcaagagcatagaaagcggattcaagctcagatagagcgtgcataagggtttcaggtac  22283700                                                                      ------>NtERF2                                                                     --------->RAP2.6(2)                                                                     ------>NtERF2                                                                    <---------DEAR3(1)                                                                    --------->DEAR3(1)                                                                   --------->ATERF1(1)                                                                  <---------ATERF1(1)                                                                  --------->LBD16                                                                  <---------RAP2.3(1)                                                                ------>ZmHOX2a(2)                                 --------->GLK1(2)              <---------LBD16                   <--                                 --------->ARR14(2)             ==================================HOX2a_HOX2a                                 ------->TEIL                  --------->ARR14(1)                 <--                     --------->MYB46(3)                        --------->CCA1(2)                  ---                   --------->MYB52(1)                          ===================================HOX2a_HOX2a          ------>MYB83--------->DEAR3(1)                       <------ZmHOX2a(2)           ------>ZmHOX2a(1)        --------->AtMYB61        <---------ARR14(2)           --------->ARR14(2)          <---------ANAC58        --------->MYB46(3)  ------>MYB83                      --------->AGP1              <---------ANAC58        <---------MYB46(2)  --------->MYB52(1)                <---------ARR14(2)       <---------PCF2        <---------MYB111(1) ------>MYB46(1)                   --------->ARR11(3)      <------NtERF2        <---------MYB55(2)--------->MYB46(3)             <-----------HVH21            --------->ATERF1(1)        <---------MYB111(2)<---------SPL7              --------->LBD16<------NtERF2  <---------ATERF1(1)       --------->ANAC58 ------>MYB46(1) --------->MYB52(2)    <---------GLK1(2)      <---------MYB46(3)       --------->ANAC58 ------>MYB83    <---------MYB46(3)   --------->At4g35610    <---------ANAC58     --------->ANAC46--------->DEAR3(2) --------->MYB55(2)   <---------At4g35610    <---------ANAC58 -RAV1(2) ------>MYB46(1) <---------MYB59            <---------LBD16--------->ATERF1(2)--------->ARR14(2) --TEIL--------->ANAC46--------->ORA47(1)<-------GAMYB <------NtERF2<---------ATERF1(2)<---------ARR14(2) ------AtSPL8   --------->HSFB2a(2)     <---------DEAR3(1)  ----------->ARR10   <-----------RAV1(2)   atacttcccaccaaacttcccaaaccgaccgaacgaatcgggtcgttgccacagggccgggtcagatccggcggccatgagaacaggcgggtccttggcg  22283800                                                               <---------At4g35610                                                               <---------ZAT2                                                          ----------->HVH21                                                     --------->ARR14(2)                                                     <---------ARR14(2)       ----------->HVH21                          <---------ANAC46      <------ZmHOX2a(1)                           ----------->GT1     <---------At4g35610  <---------ANAC46        <---------ANAC58   <-----------RAV1(2)    <---------bZIP60(2)     <---------ANAC58      ----------->GT1 -------AtMYB61           <---------ANAC58    --------->At4g35610  ----------->HVH21     <---------WRKY38(1) -------DEAR3(1)          <---------ANAC58    <---------At4g35610<----------DOF2         <---------WRKY12 ------>ALFIN1    <------ZmHOX2a(1)           <------NtERF2    --------->At4g35610     <-----------HVH21   atggtgcaggagacggagaaggatgatgacttggagcgagacgatggcagaggcgtatatttgacagctttgaagggtgatttcaaatgggtcaattggg  22283900                   --------->MYB52(1)                  <---------ARR14(2)                    ------>NtERF2                     --------->AHL20(1)                  --------->ARR14(2)                 <---------At4g35610                  --------->ARR11(3)           --------->ZAT2                      <---------ANAC58                           --------->AHL20(2)           --------->At4g35610                 ----------->RAV1(2)                        <---------AHL20(1)           <---------At4g35610        --------->At4g35610                                 <---------AHL20(2)         <------ZmHOX2a(1)      ---------->DOF2<---------ANAC58                           <---------ARR11(3)     <------ZmHOX2a(1)  <---------DEAR3(1)   --------->ALFIN1          ------->TEIL      --------->AHL20(2)   aagaagaggaaggagctgaagaaacggaggctctgaaagtagcagaggtgcctgaggctgccattactgaatgaatctctctctgagtcaaatatattct  22284000             ------>ZmHOX2a(1)            <---------------AGL15             <---------AHL20(2)           *TSS  ---------->DOF2            <---------RVE1(1)              <---------ARR11(3)         <-----------GT1                   --------->ARR11(3)              --------->ARR14(2)       <         --------->ARR11(3)      <---------YAB1                            <-----------ARR10        -         <---------ARR11(3)     <-----------TBP           ---------->DOF2  --------->GLK1(2)     <---        --------->CCA1(1)  ------->MYC3    <---------GLK1(2)        ----------->GT1              ----        --------->RVE1(1)  <-------MYC3    <---------ARR11(3)    <------------CBF         <-------TEIL   tctccttgaaatatcctttcaaagtaacacatgtttttatagatagatttttttttttttcaaagagaattggtcaaaatctgaccacaaaattcatatt  22284100          ----------->GT1      <---------AHL20(2)     <---------AHL20(2)     <---------ARR11(3)     --------->AHL20(1)                            <------MYB83     --------->AHL20(2)                            ----------->GT1     --------->ARR11(3)                            <------MYB46(1)     <---------AHL20(1)               --------->ARR14(2)    ---------->ID1    --------->AHL20(2)       <----------DOF2      --------->MYB59  --------->AHL20(2)   --------->ARR14(2)    <---------AHL20(2) ---------AHL20(2)     <---------ARR14(2)    --------->AHL20(2)                                  <--- -------->AHL20(2)    <---------CCA1(2)     <---------------AGL15                               ----- ------AHL20(2)     ------>ZmHOX2a(1) <---------ARR14(2)  <-----------RAV1(1)         <----------ID1 ----->AHL20(2)    --------->TOE2(3)----------->ARR10  --------->MYB52(2)   <----------ID1      <----   aaaaaaatatatttgtaaaatcctaaatctgctttgatcagatttgataaatttggttatttgttgtcttcataaaaaaaaacaaaaaaaaacaaaaatt  22284200             --------->AHL20(2)                              <----------DOF2        --------->AHL20(2)                                  <---------------AGL15        <---------AHL20(2)                                  --------------->AGL15  ------->MYC3    --------->ATHB12                                       ----------------->AG    <-------MYC3   <---------YAB1                                  --------->ARR11(3)      --------->At4g35610   --------->ICU4               <---------AHL20(2) <---------ARR11(3)      <---------At4g35610 ------AHL20(2)             --------->AHL20(2)--------->AHL20(2)      --------->CCA1(2)      -------- ---->AHL20(2)        ----------->GT1       --------->AHL20(2)       <---------ARR11(3)  --------->At4g35610 -----AHL20(2) <-----------GT1  --------->AHL20(2)<---------CCA1(2)  --------->ARR11(3)  <---------At4g35610   aaatattgattaaaatttaacaaatcgcaaatatttaaatttgaatttttatatatctatttccttttggagatataagcagacacatgtaagcagacca  22284300                     <------ZmHOX2a(1)                    <------MYB83                                                                 ----                    <------MYB46(1)                                                              ----                <------MYB83                                                                     ----                <------MYB46(1)                                                                 -----               --------->MYB111(1)                          ------->MYC3                       <-----               --------->MYB111(2)                          <-------MYC3                       <-----           --------->DAG2                       <---------TOE2(3)                         <----------          ---------->DOF2                    <---------AHL20(2)              <---------ARR14(2)<-----  ----------->GT1 <--------P   --------->MYB52(2)      <-----------GT1       --------->ARR14(2)<----- ---------------->ANAC81     <--------P----------->GT1<-----------GT1       --------->GLK1(1)  ------   agagaagaaaaaaaaagttggtaggactggggtaagttggatagtattttaagtttttaacacatggttttcaaaaacatatccaattgagccatcacct  22284400      <---------AHL20(2)   <---------AHL20(1)   --------->AHL20(1)   <---------ARR11(3) ---->P -->MYB46(1) -->MYB83 ---->MYB55(1) ----MYB111(1) ----MYB55(2) -HVH21 ----MYB46(2)                                                                                     <-- ----MYB111(2)                                                                                 ------ --->MYB46(3)     <---------At4g35610                                                        --------   accaatatttttttgtgttcatctaattgtttattagatagatgaaaaaatgaaacacaagttgggaattgggatactatattggcaagagtcaataaca  22284500  Previous    Next  AGI:  At5g54810.1    Description:  TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT). Identical to Tryptophan synthase beta chain 1, chloroplast precursor (TSB1) [Arabidopsis Thaliana] (GB:P14671); similar to TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT), tryptophan synthase [Arabidopsis thaliana] (TAIR:AT4G27070.1); similar to tryptophan synthase B [Oryza sativa] (GB:BAA19928.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38999.1); similar to tryptophan synthase beta subunit [Polygonum tinctorium] (GB:BAD83779.1); contains InterPro domain Pyridoxal phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926); contains InterPro domain Tryptophan synthase, beta chain; (Inter Range:  from: 22281820    to: 22284011    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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