Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->YAB1              <---------AHL20(2)                                          ---------->DOF2              --------->AHL20(2)                                        --------->AtMYB61    --------->ANAC46                                                 --------->REM1(1)    --------->ANAC58                                               ----------->RAV1(1)    --------->ANAC58  <---------AHL20(2)                        --------->ANAC46 -----------HVH21     <---------ATHB51                          --------->ANAC58 ------->bZIP60(1)--------->AHL20(2) <---------At4g35610        --------->ANAC58 --------bZIP60(1)<---------AHL20(2) --------->At4g35610   --------->GLK1(2) ->DOF2    --------->YAB1       <---------ICU4             <-----------ARR10   gacatcacgccgataataatataaataatgctaaaaattagctgaaaattttagaatgaagaatctaagcaacaccaaaagaacacattttgaacataaa  22268700                 --------->At4g35610                     --------->ARR14(2)                 <---------At4g35610                     --------->GLK1(2)              ---------->DOF2       --------->ANAC58     ------->TEIL                         -------         <---------ARR14(2)         --------->ANAC46     <---------ARR14(2)                --------->YAB1         --------->GLK1(2)          ------->GAMYB--------->YAB1                   ---------->DOF2         --------->ARR14(2)         --------->ANAC58--------->MYB52(1)           --------->YAB1        <---------GLK1(2)   --------->GLK1(2)  <---------WOX13(1)               <---------ATHB12    ---------->DOF2        <---------GLK1(2)<---------YAB1                  ----------------->AGL3   cccagtaaaagaatctgaaagctcagagagaatcgcaaacgccaatctcattgataacgaatccaatgctgaccaaaatccaataaaagtcaataacaaa  22268800                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                         --------->At4g35610                                                                                     --------->GLK1(2)                                                                                     --------->ARR14(2)                                                                                     <---------ARR14(2)                                                                                 --------->YAB1   ---                                                                           <---------ANAC55(2)    <--                                                                  <------ZmHOX2a(1) <---------GLK1(2)                    --------->MYB46(3)  <------MYB83      --------->ZAT14  --------->ANAC55(2)   <---                 <----------ID1         <------MYB46(1)   <---------ZAT14  ----------->GT1    -------               --------->ANAC58        --------->MYB59    --------->ZAT18 --------->MYB59<---------At4g35610               --------->ANAC58------>ZmHOX2a(2)          <---------ZAT18<-----------RAV1(2)  <------             ---------->DOF2 --------->ARR11(3)    --------->bZIP60(1)   ===========================RAV --->DOF2 --------->LBD16    <---------ARR11(3)    <---------bZIP60(1) --------->GLK1(2)<-----------RAV1(1)   gatgaaagtatcagggaaaggaacaaactttgatcttgaatttggtattggggacatcagtgcactcaggacgaatcaggtaataagaatctgctggttc  22268900          <---------ALFIN1      ------>NtERF2     --------->ARR14(2)     <---------ARR14(2)     --------->DEAR3(1)    <---------At4g35610    --------->At4g35610    <------NtERF2    --------->ATERF1(1)   <---------MYB46(3)   <---------RAP2.6(1)   <---------DEAR4(2)   <---------RAP2.3(1)   <---------ERF1   <---------ORA47(2)   <---------DEAR3(2)   <---------RRTF1(1)   ------>NtERF2   --------->ABI4(2)   <---------ATERF1(1)  <---------RAP2.6(2)  --------->DEAR3(1)  <---------RAP2.3(3)  <---------RAP2.3(2)  <---------DEAR3(1) <------NtERF2 --------->ATERF1(1) <---------At4g35610 ------>NtERF2 ---------RAP2.3(1) ---------ATERF1(1) ----->NtERF2 ---------RAP2.6(1) ---------RRTF1(1) --------DEAR3(1) --------RAP2.3(2) --------RRTF1(2)                                             <----------DOF2 -------At4g35610                                       <-----------GT1 ------>At4g35610                                    <---------ICU4  --------->LBD16 -------LBD16                                       --------->ICU4  --------->LBD16 --------RAV1(1)          <----------DOF2         --------->YAB1   <---------LBD16 -->ARR14(2)              <---------DAG2         --------->AHL20(2)--------->LBD16            ------- ---ARR14(2)     <---------YAB1              --------->AHL20(2)   <---------LBD16            --------   tgcggcggctccccacatttttatcgaactttttcaatctccctcaaaaaaataaaaattacaactttcccgggaaaatcaaatgaaaaatccaaataaa  22269000                                                                    <------ZmHOX2a(2)                                                                   --------->ARR11(3)                                       ----------->GT1             <---------ARR11(3)                                       <----------ID1  --------->HSFB2a(1)                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ---------->DOF2                --------->ANAC46   ---------->DOF2     <---------HSFB2a(1)      <----------DOF2 -->AHL20(2)--------->HSFB2a(2)  --------->ANAC58      <---------HSFC1(2)  <----------DOF2 ->AHL20(2) <---------HSFB2a(2)  --------->ANAC58    <XXXXXXXXXXXXXXXXXXXXMIR2938        *TSS       -   aaatgggtttttttctacaaacaagaatggagaagacgaaagagaaaaaaaactggaaccctctcaaaagatcaattcttttctttgtcaaattttggag  22269100                                                                                                    -                                                                                                   --                                                                                                   <-                    ------>ZmHOX2a(2)                                                              --                   <------ZmHOX2a(2)                                                               --                   --------->CCA1(2)                                                               --                  >>>>>>>>>GATA-2                                                                  <-                  <---------ARR11(3)                                                              <--                  --------->AGP1                                                                  ---                  >>>>>>>>>GATA-3                         --------->ICU4            <----------DOF2<-                  >>>>>>>>>GATA-1                       ---------->DOF2   <----------DOF2   <--------P                  >>>>>>>>>GATA-4                  ---------->DOF2        <---------DAG2   <-------GAMYB --------->DOF2   --------->ARR11(3)         <---------TOE2(3) ---------->DOF2 <----------DOF2    <--   aagaaagaaaacaaattagagatctaattaagaggggtccagtttttgagattaaaagaaaagatgaaagacagaacttttcttttcttttggggttgca  22269200    <-----------GT1 <---------YAB1 -------->AHL20(1) ------>ATHB1 --------AHL20(2) ------->YAB1                                                                                       - ------->AHL20(2)                   --------->ATHB12                                              <-- ------->ATHB51        <---------ICU4               --------->ANAC58   ----------->GT1            <-- -------HAHB4          --------->YAB1<---------ANAC58                  <---------MYB46(3)        ---- -------ATHB12        <---------ATHB12              --------->ANAC58  --------->ALFIN1           <--- ------>ICU4        --------->WOX13(1)       <---------LBD16       <-----------RAV1(1)         <----- --------ICU4      <---------AHL20(2)<---------ANAC58           <---------AHL20(2)           ------>ZmHOX2a(2) -------ATHB51     --------->AHL20(2)<---------ANAC46          <---------YAB1         --------->ALFIN1   attattttactagtaatctaattaatcatcaactatgttgagtggtctctggagaagcaaacatttttaatggtggtgaattaagaaggtgttgatcgtt  22269300                             <----------DOF2                           <---------YAB1     --------->TOE2(3)    --------->ARR11(3) <---------WRKY12         <-----------GT1<---------MYB52(1) <---------WRKY38(1)      <---------ARR11(3)             --------->CCA1(2) <---------WRKY45    <---------AHL20(2)<---------------AGL15 -------->WRKY18(1)  --------->AHL20(2)--------------->AGL15 ----MYB46(1)      <----------DOF2    ----------------->AGL2 ----MYB83  --------->ARR11(3)        ----------------->AGL1 ----->MYB59<---------ARR11(3)        <-----------------AG         <---------ANAC46 ------MYB46(3)<----------DOF2        <-----------------AGL2       <---------ANAC58             ----- ----MYB52(1) ------>ZmHOX2a(2)       ----------------->AGL3       <---------ANAC58--------->GLK1(2)   tggtcaacctcatcgatctttcttttattatctttctcttcccgtttttagtaaacgagagacaaggttgcgttttttgacaaagtttctggtttagtca  22269400                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                  --------->LBD16                                                                <---------LBD16   <---------ETT(2)                                      --------->ATHB12 --------->At4g35610       <---------ATHB12           --------->MYB52(2)                        <---- ---->WOX13(1)           --------->WOX13(1)         <--------P<-----------GT1        <------ZmHOX2a(1)   atctgttgacatagtttttggtttagtcaatcagtttttggtttggagttttgggttagtgattaaaccggattcaaaccctctacaggactaagagtct  22269500                                                                 <----------DOF2                                                        --------->GLK1(1)                                                        <---------GLK1(1)                                                       <---------ARR14(2)                                  <---------LBD16    --------->LBD16                     ---------->DOF2   --------->ZAT14 --------->ARR14(2)    <---------AHL20(2)--------->DAG2--------->LBD16 <---------ANAC46--------->YAB1 ------DOF2  <----------DOF2    ------->TEIL       <---------LBD16 <---------YAB1   ------>ZmHOX2a(2)   ttgtgtttaatcgaacttttacaaaaagtgtttgaacccggtttactcactatgccggatttctatactttgataatttagttcgatctccatccgattt  22269600  Previous    Next  AGI:  At5g54780.1    Description:  RAB GTPase activator. similar to RAB GTPase activator [Arabidopsis thaliana] (TAIR:AT4G27100.2); similar to RAB GTPase activator [Arabidopsis thaliana] (TAIR:AT4G27100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39011.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) Range:  from: 22265673    to: 22269089    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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