Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ------>ZmHOX2a(1)                                                                             <---------ARR14(2)                                                                             <---------ARR11(3)                                                                             --------->ARR11(3)                                                                             --------->ARR14(2)                                                                            <---------GLK1(1)                                                                            --------->HSFB2a(1)                                                                            <---------HSFB2a(1)                                                                            --------->KAN4(1)       <---------ANAC58                                                     --------->GLK1(1)       <---------ANAC58             <---------YAB1                          <---------KAN4(1)       <---------ANAC46         <---------ANAC58                           ---------->TaMYB80       <---------ANAC55(2)      <---------ANAC58                           <---------KAN4(2)       --------->ANAC55(2)    <---------YAB1                             <------ZmHOX2a(1) --------ANAC46        <------ZmHOX2a(1)        ---------->DOF2        <---------TOE2(3)     <------- --------bZIP60(2)  <---------HSFB2a(2)      --------->ANAC58      --------->At4g35610  --------->YAB1 ------>HVH21       --------->HSFB2a(2)      --------->ANAC58  --------->ANAC46 --------->TOE2(3)----   gacatggacgcgtgatgttcttcgaggagatgatgcttatgagttgcaagtaaagctactgaaacaagtcgctgaggaatatccttacaaggatgatgaa  22260700                           ------>ZmHOX2a(1)                          --------------->AGL15                          --------->TOE2(3)<-----------GT1                                    -------             <-----------ARR10          <---------ICU4                                  <-----------GT1     --------->WOX13(1)   <---------------AGL15                                   ---------->ID1 --YAB1     <---------CCA1(2)---------->DOF2<---------At5g28300         --------->TOE2(3)   <-------- ----->AHL20(2)          ----------------->AGL1             <----------DOF2   <----------DOF2--------   taaatatcaatctcttatcttccctcttcctcaaagagaaactaattactgttttgtagtctctttctctgcattcttagctttgttttttttctccgca  22260800                                                           ----------->HVH21                                                         <---------TGA1a                      --------->AHL20(2)          <---------ZAT14          <---------CCA1(2) --------->ANAC46  ------->TEIL                   --------->ZAT14        --------->YAB1 -->LBD16  --------->ANAC46      --------->AHL20(2)      <---------bZIP60(1)                        - -LBD16    --------->ANAC58      <---------AHL20(2)      --------->bZIP60(1)  --------->YAB1        - ->ANAC46  --------->ANAC58  ----------->GT1     <---------ZAT6   ----------->GT1              ------   aacacaaaactataagctatgaaactaaatactgtttaaatccatttcttagtgttctgatgtgacaagagttaatcgtatcacaatgtctcaaatcgtg  22260900                                                                     <---------------AGL15                                                                     --------------->AGL15                                                          <---------AHL20(2)                                                       --------->AHL20(1)                                                       <---------ARR11(3)        <------ZmHOX2a(2)                     <---------ARR11(3)    ----------------->AGL1 <---------AHL20(2)                           --------->ARR11(3)    ----------------->AG    --------- -------->AHL20(2)                           <---------GLK1(1)    <-----------GT1           --------- -------->ICU4                      <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-------- ----->GT1            <------ZmHOX2a(2)<----------DOF2 <---------AHL20(1)          <----------ID1   -   taataaatagatcaattcagtgagatcagagtgtgttttttctttcgatatctccaatattttttagtttacctcatgaagaaataagacaaaataaaat  22261000                                                 <------------CBF                                                --------->ATHB12                    <---------WOX13(1)          <---------ICU4        <---------YAB1                   <------------CBF            <---------YAB1       --------->YAB1                  --------->ATHB12             --------->ICU4    <---------ICU4               <---------At4g35610     <---------ANAC58          -------->HAHB4           <-----------HVH21           <---------bZIP60(2)       --------->YAB1          <---------ANAC46             <---------TGA1a          --------->ICU4              <--------          --------->TGA2(1)            --------->TGA1a          <---------YAB1            *TSS         <------NtERF2<---------MYB46(3) --------->ALFIN1     <---------ICU4             --------->ARR11(3)       --------->ALFIN1                <---------ANAC58       --------->YAB1             <---------ICU4    <---------TOE1(3) <------MYB46(1)  ==================================================bZIP_DOF    <---------TOE2(3) <------MYB83     <---------ANAC46    <---------AHL20(2)            <---------ARR11(3) >AHL20(2)<---------TGA2(1)            --------->O2       --------->AHL20(2)             --------->AHL20(1) >AHL20(1)--------->bZIP60(1)          <---------O2 ----------->GT1<---------YAB1 ---------->ID1   -- -AHL20(2)<---------bZIP60(1)       ----------->TGA1<---------MYB46(3)----------->TBP    <---------AHL20(1) -------->TOE2(3)<---------YAB1     ----------->HVH21    <---------YAB1       <----------DOF2    <---   aacattaaggtgtcgtcatatgattggttcagataaatctgacgtggacatcattggttattaaaaatgattataaatctctttgtcttaatattttctc  22261100                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                               --------->ARR11(3)                                                                               --------->ARR14(3)                                                                               <---------ARR14(3)                                                                               <---------GLK1(2)                                                                               <---------ARR11(3)                                                                               --------->AGP1                                                                               --------->ARR14(2)   <---------HSFB2a(2)                                                         <---------ARR14(2)   --------->HSFB2a(2)                     <---------TOE1(3)                  <---------CCA1(2)  <---------ETT(2)                ----------------->AGL3  <-----------GT1    ----------->ARR10 ---GT1                           =================================================================== ------->DEAR3(1)            <---------DAG2<---------TOE2(3)             --------->YAB1 ------At5g28300             <----------DOF2         <----------DOF2    <---------YAB1              -   accgtcgagaaaacaaaacacaagttgcagactttatccaaatttagggttttctctttttttcttacttagttatcatcagatcttcaaaaccccaaaa  22261200                                                                                <---------MYB52(1)                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                           <---------ARR14(2)                 <----------DOF2                                        --------->HSFB2a(2)              <-----------GT1                                           <---------HSFB2a(2)        <---------ANAC55(2)                                            <-----------GT1        --------->ANAC55(2)                                        <----------DOF2        ----------->GT1                                            <---------DAG2       --------->MYB59  --------->LBD16                           <---------ANAC58      <-----------RAV1(2)     ------->TEIL         <------------------------ANAC81 =================MADS_MADS  <---------CCA1(2)<---------GLK1(2)   <---------ANAC58   <---------AHL20(2) ---------------->AG  <---------LBD16   <------ZmHOX2a(2) <----------DOF2  --------->ARR14(2)       -   tttgcaaatcaggtaataactttctccgtatgtatctcttcgatcaccgattgtctgtttctttgtttgcttttctcgatccgttattgaatttttgagt  22261300                                                                               <---------ANAC46                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)                                                                          <---------AGP1 --------->ARR14(2)                                                                          --------->ARR14(2)        <                                                                          <---------ARR11(3)        <                                                                          <---------ARR14(2)       --                                                                          <---------GLK1(2)       <--                                                                          <-----------ARR10       <--                                                                          --------->ARR14(3)      ---                                                                          --------->AGP1 <---------ARR14(2)                                                                          --------->ARR11(3)      ---                                                                          <---------ARR14(3)     <---           <---------YAB1    <----------DOF2                             <---------CCA1(2)<---------At4g35610 ----------->GT1          <-----------GT1                         <---------ANAC58       ------->TEIL --------->ID1    --------->TOE2(3)                               <---------ANAC58      <---------CCA1(2)   tcgtcgttaaattttgattacatcaatttttcttttcgattcgattcagagagattgaattgcaaattatgtgccagatcttcgtgttctgtatctgatt  22261400   ------>ZmHOX2a(2)  <------ZmHOX2a(2) <---------ARR14(3) --------->ARR14(3) <---------ARR11(3) <---------ARR11(1) <---------ARR14(2) <-----------ARR10                                               <---------WRKY12 --------->ARR11(3)                                              <---------WRKY38(1) <---------AGP1                                                 <<<<<<<<<<WRKY43 --------->ARR14(2)                                             <<<<<<<<<<WRKY26 ---------CCA1(2)                                             <------MYB83 ---------ARR14(1)                                           --------->MYB59 ------->LBD16  xxxxxxxxxxxxxxxx>smallRNA(i)             --------->ATHB12 -------HSFB2a(2)                                       <---------YAB1                         ------ -------ANAC55(2)                                   --------->ARR11(3)      <---------AHL20(2) ------ ------>ANAC55(2)          <---------MYB46(3)     <---------YAB1<<<<<<<<<<WRKY38             <------- ------>HSFB2a(2)       <-----------RAV1(1)     --------->YAB1----------->GT1                <------- ------LBD16<XXXXXXXXXXXXXXXXXXXXMIR837-3P  --------->MYB46(3)<------MYB46(1)               <--------   ccggatcttggttattagttttttttttgttgttggaatgaattcaacaacgatgattttgatttggtcaattgattttttaatgctatagttttaacct  22261500                             <---------ANAC58      --------->KAN4(1)  =========================HOX2a_HOX2a           <---------GLK1(2)  <------ZmHOX2a(1)          <---------ANAC58------>ZmHOX2a(2) --->TOE1(3)           --------->At4g35610 <---------AGP1 --->TOE2(3)        <------ZmHOX2a(2)      --------->ARR14(2)          <-----------GT1 ----------AGL1    --------->ARR14(2)      --------->ARR11(3)     <----------DOF2 ----------AG      <---------ARR14(2) <---------ANAC46         --------->ARR11(3) ---GT1<---------AHL20(2)<----------DOF2   <---------ARR14(2)  <---------ARR11(3)   tataggaatgtaattgaactggatcagctttacttgaattgtttggatctagattattcagacaacatctttttaactaaattgaaacatatttgtgttt  22261600  Previous    Next  AGI:  At5g54750.1    Description:  transport protein particle (TRAPP) component Bet3, putative. similar to unknown [Populus trichocarpa] (GB:ABK94252.1); contains InterPro domain TRAPP I complex, Bet3 (InterPro:IPR016721); contains InterPro domain Transport protein particle (TRAPP) component, Bet3 (InterPro:IPR007194) Range:  from: 22258707    to: 22260947    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g54760.1    Description:  eukaryotic translation initiation factor SUI1, putative. Identical to Protein translation factor SUI1 homolog 1 [Arabidopsis Thaliana] (GB:P41568;GB:Q9SLK5); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT4G27130.1); similar to Protein translation factor SUI1 homolog (Translation initiation factor nps45) (GB:Q9SQF4); contains InterPro domain Eukaryotic translation initiation factor SUI1; (InterPro:IPR005874); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR001950) Range:  from: 22261090    to: 22262996    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version