Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <----------DOF2                                       --------->LBD16                                      <---------ANAC55(2)                                      --------->ANAC46                                      --------->ANAC58                                      --------->ANAC55(2)                                      --------->ANAC58                                     ------>ZmHOX2a(2)                                     <---------LBD16         --------->TOE2(3)          <------ZmHOX2a(2)    <------ZmHOX2a(1)               --------->CCA1(2)  <---------TOE2(3)                --------->AGP1 ->ZmHOX2a(2)                      --------->ARR14(2) >TEIL<---------GLK1(1)            <---------GLK1(2) -->ARR11(3)        <---------WRKY12--------->ARR14(1) ---ARR11(3)      ------>ZmHOX2a(1)<---------ARR11(3)                                               < -->ARR14(2)      =========================HOX2a_HOX2a              <---------ARR14(2)<---------AtMYB61 ---AGP1 --------->TOE1(3)         <---------ARR14(2)               --------->ARR14(2)<---------TOE1(3) ---ARR14(2)      ==========================HOX2a_HOX2a             <---------ARR11(3)<---------TOE2(3) -AGL3--------->GLK1(1)          ----------->ARR10       ---------->DOF2------>ZmHOX2a(1)--------->ALFIN1   ttataaggaaaccctaactccttcaacggtttagctagatccgcaacttttgttgaagtaaaagcatcaaaatcctcttgactaggttgaggttgagcgt  22116600                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                             <-------                                                                                            <--------                                                                                          --------->ARR14(2)                                                                       --------->ALFIN1   <---------ARR14(2)                                                                      <-------MYC3       <------NtERF2                                            --------->ANAC58         <---------ANAC46    --------->ATERF1(1)                                            <------NtERF2     <------MYB83              ------>NtERF2                                            --------->ANAC58  <------MYB46(1)           <-----------HVH21                                           ------>NtERF2    <--------P------->MYC3      <---------ATERF1(1)   ------>ZmHOX2a(2)                     <---------ABI4(2) <-------GAMYB               <---------ANAC58 <---------ARR11(3)                  --------->ARR14(2)   <---------MYB46(3)           <---------ANAC58 <---------ARR14(2)                  <---------ARR14(2)   --------->MYB55(2)           <---------DEAR3(1) --------->ARR14(2)             <-----------------AGL1   <---------TOE2(2)           ------->GAMYB --------->ARR11(3)            --------->PCF5       <------ZmHOX2a(1)<---------O2 --------->MYB52(1) ---------CCA1(2)           <---------AtMYB61--------->DEAR3(1)     <-----------------------TaNAC69(2)   ttggatcttcaatttgagttttcagagggagaggtccccaatcggcaccgaagaggacggaggttggagaaacgtggagaagaacaacggcgtctccggg  22116700                                                                                           <------MYB83                                                                                           <------MYB46(1)                                                                                          <---------AtMYB61                                                                                          --------->MYB46(2)                                                                                          --------->MYB111(2)                                                                                          --------->MYB111(1)                                                                                          --------->MYB55(2)                                                                                          <---------MYB46(3)                                                                                         <---------MYB55(1)                                                                                         <--------P                                                                                         <---------MYB52(1)                                                                                        <-------GAMYB                                                                                       <---------DEAR3(2)                                                                                       <---------MYB46(3)                                                                                       --------->MYB55(2)                         --------->SPL7                                              <---------MYB52(1)                        --------->MYB52(1)                                          --------->LBD16                       ------->GAMYB                                                ------------>AtMYB77  <---------REM1(1)    <---------SPL7                               <----------DOF2 ------>NtERF2 ----->HVH21          --------->MYB46(3)            <------ZmHOX2a(2)              <---------DEAR3(1) -->HSFB2a(2)         <---------MYB52(2)           --------->ARR11(3)             <---------LBD16 -->LBD16  ------>ZmHOX2a(2)       --------->ARR11(3)    ------->GAMYB         <---------GLK1(1) ---HSFB2a(2)       --------->MYB52(1)<----------DOF2  ----------->RAV1(2)     --------->ZAT2 ->ANAC46--------->ARR11(3)        <---------ARR11(3)  --------->At4g35610     <---------ZAT2<------- --LBD16 <---------ARR11(3)    ---------->DOF2     <---------ARR11(3)  <-----------GT1<---------DEAR3(1) -LBD16<---------ZAT6 <---------MYB55(2)   <---------LBD16  <---------ATERF1(1)--------->At4g35610  <   acggatgtagtgatctacagcccaacgaacggcgaaagagctttcttcggagagatcaactgcgactccgattttacgacgagctccggcggttggtgtt  22116800             --------->ALFIN1          --------->ALFIN1         --------->ATERF1(1)         <------NtERF2       <---------DEAR3(1)       --------->ALFIN1       <---------ANAC46      --------->ATERF1(1)      <---------LBD16      <------NtERF2      <---------At4g35610      ------>NtERF2     <---------RAP2.3(1)     <---------RRTF1(1)                                    <---------ANAC46    <---------RAP2.6(2)                           --------->ALFIN1    <---------RAP2.3(2)                         --------->O2                 --------->ATHB12    <---------ANAC58                            <---------O2<---------MYB46(3)    <---------RRTF1(2)                          <---------TGA1a        ------>ZmHOX2a(2)    <---------RRTF1(3)                          --------->TGA1a      <---------ARR11(3)    <---------RAP2.3(3)                         <---------bZIP60(2)  ------->TEIL    <---------At4g35610    <---------ANAC46                            <---------ANAC55(1)  <---------ARR14(2)    <---------DEAR3(1)                          <---------ANAC46     <---------AGP1  --------->At4g35610    <---------ANAC58                         ----------->TGA1        --------->ARR14(2)          ----   <---------LBD16                  <---------AtMYB61   --------->ALFIN1    <---------YAB1    -------  --------->ALFIN1            --------->ALFIN1  <---------ANAC58     --------->ARR11(3)  --------->ALFIN1 ----RAV1(1)<------ZmHOX2a(1) <---------AtMYB61 <---------ANAC58  <---------WOX13(1) --------->ZAT2 ---------GLK1(1)          <------ZmHOX2a(1) ----------->HVH21 --------->ALFIN1      <---------ZAT2 <   ggagttgcggcggaggagggagtagatgaggagtggtgatggtgagagtgacgtggagatggagggtgatggatcttgatgtttggaagctgtggatgat  22116900               --------->ICU4             --------->YAB1     --------->ZAT2     --------->At4g35610     <---------At4g35610    <-----------RAV1(1)  <---------At4g35610                                                  <---------------AGL15 <---------ARR14(2)                                                --------->ARR14(2) --------->ARR14(2)                                                <---------ARR14(2)---------->DOF2 --------->GLK1(2)          --------->ARR11(3)            --------->ALFIN1 --------->MYB52(1) -->ZmHOX2a(2) <---------YAB1                       --------->ALFIN1   --------------->AGL15 -->ATHB12  <-------TEIL   <---------At4g35610   --------->DAG2  <------MYB83 ------->GAMYB ---------GLK1(2)<---------ARR11(3)             ---------->DOF2  <------MYB46(1)    *TSS   cggaatctgctggattcatgatttttttcagatgttgtttttgttcgtcggaaagtgggagtgagggaggtttctcttaacggagaagaaagaagcgttg  22117000                                                                                                    <                                                                                                   --                                                                                                  ---                                       <---------AHL20(2)                                       -----                                       --------->AHL20(2)                                     =======                                  <---------MYB52(1)                                   ==============         <---------AHL20(2)      <-------GAMYB---------->DOF2                          <------ZmHOX2a(1)        --------->AHL20(2)       <---------RAP2.6(3)    --------->ANAC58               ==============HOX2a_HOX2a        <---------AHL20(2)      ----------->GT1    <----------ID1          ----------->GT1    -------   ---------->ID1 --------->TOE2(3)  <-----------TBP    --------->ANAC58<---------REM1(1)     ------>ZmHOX2a(2)   tttttgtttttttaatagaacattagactgcatgccgttatttatatacaaagacgacaagcattctaatatagatgtagttaatagaaggagtgatcca  22117100                                                              *TSS                                                             <---------DEAR3(2)                                                            <---------DEAR3(1)                                                            <---------At1g77200                                                           --------->ATERF1(1)                                                         <---------ANAC46                                                         --------->DEAR3(1)                                                         <---------DEAR3(1)                                                       --------->LBD16                                                       ------>NtERF2                                                       <---------ATERF1(1)                                                      --------->ANAC46                                                      <---------DEAR3(1)                                                     <---------LBD16                               --                                                   ===========================HOX2a_HOX2a --------->At4g35610                                                   ------>ZmHOX2a(2)                      <---------ZAT2                                                  <------ZmHOX2a(2)             <----------DOF2    --           <-----------ARR10                      --------->GLK1(1)            --------------->AGL15           --------->ARR14(2)                     ============================HOX2a_HOX2a <------NtERF2           <---------ARR14(2)                     <---------GLK1(1)            <---------------AGL15       <------ZmHOX2a(2)                         --------->ARR14(2)           <-----------------AGL1     <------ZmHOX2a(1)                           <---------ARR11(3)           <-----------------AGL3 -----------HVH21                                --------->ARR11(3)           <-----------------AGL2 ----->GAMYB                                     <---------ARR14(2)           ----------------->AGL1 ------>MYB46(3)                                 <---------AGP1   --------->GLK1(1)  <---------HSFB2a(2) ---->MYB52(1)                                  <---------CCA1(2) <---------GLK1(1)  --------->HSFB2a(2) ===========HOX2a_HOX2a                    <-----------GT1 <------NtERF2 <---------ALFIN1 --------->ZAT2 =============HOX2a_HOX2a               --------->ARR14(2)------>NtERF2------>ZmHOX2a(1)  <---------At4g35610 -->MYB46(3)                            <---------ARR14(2)<-----------HVH21   ----------------->AG --   acggtcaggatcaaatctgagcgccatagttttgaagaagacgattcactagatctccggcgtcggtgatttcctccacttccttttctggcagctagaa  22117200              <---------GLK1(2)         --------->ANAC58                                                         <---------ANAC58         --------->ANAC58                                                         <---------ANAC58     --------->TOE2(3)   <----------DOF2                  <---------ANAC46   <---------At4g35610  --------->ARR14(2)     --------------------->WRI1   --------->ATHB12       --------->At4g35610 ------->ANAC46       ------>ZmHOX2a(2)              <---------YAB1------>ZmHOX2a(2) ------->ANAC58      --------->GLK1(1)              <---------TOE1(2)      <-----------RAV1(2) ------->ANAC58--------->GLK1(2)                    <---------TOE2(2) ----------->HVH21   gacgaaacctcactcaaattctgatctctttgtataattcgatcgagttattcgtatgattcgtatagatcggtgactcagatggcgaactacttggctc  22117300                                         ----------->GT1                                         --------->LBD16                                        <---------DEAR3(1)                                        --------->DEAR3(1)                                        --------->ATERF1(2)                                       <------NtERF2                                       --------->ATERF1(1)                                      ------>NtERF2                                      --------->ABI4(1)                                      <---------ATERF1(1)                                     <---------ATERF1(2)                                     --------->DEAR3(1)                                     <---------DEAR3(1)                                     --------->ATERF1(2)                                     --------->RAP2.3(3)                                    <------NtERF2                                    --------->ERF1                                    --------->RAP2.6(1)                                    --------->ATERF1(1)                                    --------->RRTF1(1)                                    --------->ORA47(2)                                   <---------ATERF1(1)                                   ------>NtERF2                                   <---------RAP2.3(1)                                  <---------DEAR3(1)                               --------->TGA1a                    =============HOX2a_HOX2a                    ------>ZmHOX2a(1)--------->RAP2.3(2)                   --------->TOE1(2)--------->DEAR4(2)                   --------->TOE2(2)--------->RAP2.3(1)               --------->GLK1(1)  --------->DEAR3(1)               <---------GLK1(1)<-----------HVH21           <---------AHL20(2)              <---------ICU4   --------->O2                <---------AHL20(2)            <---------TOE2(3)  <---------TGA1a             --------->AHL20(2)    <---------HSFB2a(2)  <---------HSFB2a(2)          <---------O2                <---------AHL20(1)    --------->HSFB2a(2)  --------->HSFB2a(2)     ------>ZmHOX2a(2)           --------->LBD16 <---------------AtSPL8  <-----------RAV1(2)    <------ZmHOX2a(2)--------->At5g28300         --------------->AtSPL8        <   agttccagacgattaagaattcctgcgatcgtctcgtcgccgccggtgaatttctccccaatttttttcaaatgtgtacatttctaggggttttgtttct  22117400                                  <---------DAG2                                  <----------DOF2                               ---------->ID1                       ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                                 --------->AHL20(2)                     --------->ARR14(2)                                 <---------ARR11(3)                     <---------ARR14(2)                                 <---------AHL20(1)                     <-----------ARR10                       <-----------HVH21                     <---------ARR11(3)                     --------->bZIP60(1)                     -     --------->At4g35610      <-----------GT1               --------->bZIP60(2)                   <-- --------->ATHB12    --------->ARR11(3)                     <---------bZIP60(1)<---------ZAT6     <-- ---------YAB1      <------ZmHOX2a(1)           ----------->RAV1(1)     --------->AHL20(1)-----------   ctacgattgctgcattcgattaggatcttatttctccttttttttttctgccacattttgcgatgtcatagctatatattagtggaaagtttctcaatgt  22117500  Previous    Next  AGI:  At5g54430.1    Description:  universal stress protein (USP) family protein. similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT4G27320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41274.1); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Universal stress protein (Usp) (InterPro:IPR006015); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 22114392    to: 22116984    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g54440.1    Description:  binding. similar to hypothetical protein OsJ_035038 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20829.1); similar to hypothetical protein OsI_037428 [Oryza sativa (indica cultivar-group)] (GB:EAY83469.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39224.1); contains domain TPR-like (SSF48452); contains domain EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 (PTHR13251) Range:  from: 22117162    to: 22125059    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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