Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     ================================RAV       <----------DOF2 <---------ARR14(2)                          --------->YAB1        <---------MYB52(1)       <---------DAG2  --------->ARR14(2)                          <-----------RAV1(2)  <-------GAMYB ----->YAB1           ------>MYB46(1)         --------->YAB1     --------->GLK1(2) ---------->ID1 ---ICU4              ------>MYB83     --------->At4g35610   >>>>>>>>>TBF1     <---------MYB52(1) -->YAB1    --------->TOE1(3)          <---------At4g35610>>>>>>>>>TBF1   --------->GLK1(2)     ----- --ATHB12   --------->TOE2(3) <-----------RAV1(1)      >>>>>>>>>TBF1  <------ZmHOX2a(1)<-----------RAV1(1)   caaaattagctttaccttgaaaccaaatccaaatgttgttcagaagaatcatatgaagaagaagaagaatcaggagaaactgtttgtctctgttgtctta  22004000                                         <---------At4g35610                                         --------->At4g35610                                 --------->ANAC46                             --------->AGP1                                 --------->ANAC58                       --------->MYB46(3)          <                                 --------->ANAC58          ---------->DOF2  ------->GAMYB         ---                               ---------->DOF2          <-----------HVH21----------->RAV1(1)   ------ ----->DOF2  ------->TEIL    <----------DOF2   ------>ZmHOX2a(2)   ----------->GT1  <------ZmHOX2a(1)   aagccatagtccatgtatcacaaacaagagcctttaagcaaggagctgatccaaaacccttcaaaggagaagtaacaacagaactaggagaagaagatgg  22004100                      --------->At4g35610                ------>ZmHOX2a(2)               <------ZmHOX2a(2)              --------->AGP1              --------->ARR14(3)              <---------ARR14(2)              <---------AGP1                                                                        -              --------->ARR14(2)                                                                  ---              <---------ARR11(3)                                                                  ---              <---------ARR14(3)                    <---------YAB1                              -----        --------->YAB1<---------At4g35610         <--------HAHB4                                -----       <---------ATHB12                           <---------ICU4                               ------ ----------ID1--------->ARR11(3)         <---------ANAC58                                      <----- ------->DOF2--------->RVE1(1)           <---------ANAC58  >>>>>>>>>TBF1                    <-------- ----->GT1---------->DOF2      ----------->GT1   --------->ICU4                  --------->AtLEC2 ---   taaagacaaatcaaaagatcttggagcagaacattgtaatttgacttgtcgattattagaagaagaaacccatcttggtttccatgcccatccaataacc  22004200     --------->YAB1    <---------ATHB12                                                                                - ------>GAMYB                                                                                <-------TEIL --->MYB46(1)                                                                            <----------- ----->P               ------>ZmHOX2a(1)                --------->ANAC58                 <----------- -->GAMYB           ------>MYB46(1)                     --------->ANAC58      <---------ANAC55(2) <-- ---->AtMYB61       ------>MYB83                   --------->ANAC58           --------->ANAC58------- --->MYB46(3)     ------->GAMYB                    --------->ANAC46           --------->ANAC58------- ----MYB52(2)    --------->MYB46(3)                --------->ANAC58       <------ZmHOX2a(1)  -------- -ATHB12 ---------->DOF2                <---------YAB1---------->DOF2  <---------At4g35610 <---------SPL7 --->MYB83     --------->MYB52(1)      --------->AHL20(2)        <----------DOF2      ---------->DOF2   aacccaataacaaaagctaaccatcctgtgattagccctaatattatactctcaagcaaagccataactttgcagaggataagtaagagaaagggtacgc  22004300     --------->AHL20(1)                                                            <----------ID1 -------->AHL20(2)                                                     --------->At5g28300 ----AtSPL3                                                            <-----------HVH21 ----AtSPL8                                        --------->ICU4      <------NtERF2 --------DOF2                                    ---------->DOF2      <---------DEAR4(2) -->ANAC58                              <---------AHL20(2)           <---------DREB2C(2)   ---------- -->ANAC58                          <---------AHL20(2)               <---------DEAR3(1)---------->DOF2 ->SPL7                 ---------->DOF2<---------AHL20(2)    <----------DOF2  <------ZmHOX2a(1)<-----   ctttaaatatgttaagaagaaactaaaaaagaaacgatttttttatttggataaagatgaaaactttgaaggcggtgagaggaagaagacaaagaaaggg  22004400     <---------MYB46(3)     ----------->GT1                                --------->ICU4    --------->ALFIN1                       --------->DAG2      --------->ANAC58 --------->ATHB12                         ---------->DOF2      --------->ANAC58 >DOF2                           ------->TEIL  ----------->GT1 --------->ANAC46                ------ -----ID1          ----------->GT1*TSS<---------YAB1<---------YAB1               <------------CBF   acatgagtggtgagaagaagagagataaatctatggacttatggtaaaggggttattattcgtagacgctaagtagtagtagccattgatggagcttgaa  22004500                   <------ZmHOX2a(1)                 ------------------------>ANAC81       --------------->AGL15                                          --------->ORA47(1)       <---------DAG2                                             --------->AtMYB61       <---------------AGL15                                      <---------ALFIN1              <----       <----------DOF2                                           --------->MYB46(3)             <----      <---------ANAC58                                         ------>NtERF2                  -------      <---------ANAC58                                        --------->DEAR3(1)<------ZmHOX2a(1) <--  <------------CBF----------->GT1         <---------SPL7  --------->DEAR3(2)  <---------TOE2(3)<----- ---->DOF2      <------ZmHOX2a(1) --------->AHL20(2)----------->GT1  --------->DEAR3(1)       <------   agaccattgctttttagaggaggagaaacaaaaaaaaaaaatggtggacggagagtgtgaaacgacgaccaccgtccattaaggaccatttctaaattac  22004600       <------ZmHOX2a(1) --------->ATHB12 -----TOE2(3)                                         --------->AHL20(2) -----YAB1           --------->ARR11(3)   <----------DOF2         --------->AHL20(2)              <-- -->MYB52(1)         <---------ARR14(2)<-----------GT1<---------AHL20(2)                         ---- -----GAMYB  <---------ALFIN1 ----------->GT1        <---------AHL20(2)     <----------DOF2--------->YAB1 ----At5g28300      <---------CCA1(2) <<<<<<<<<<GT-3b--------->AHL20(2)     ------>ZmHOX2a(1)   ----- -----GT1 <------ZmHOX2a(1)<---------AtLEC2    --------->LBD16    <---------AHL20(2)--------->AHL20(2)   ggttgattaggaggaacacttcaaatcttgcagggtttatttttctttccccaaattaaattctgagttttattagtcctttgatttttaatatcgtaac  22004700                                                                               <---------WOX13(1)             <----------DOF2     <---------YAB1                              --------->ATHB12           --------->LBD16    <---------AHL20(2)                            <---------YAB1      -----   <---------AHL20(2) <-----------HVH21            --------->ICU4       <-----------GT1  <----------DOF2 -------MYB52(1)     --------->bZIP60(1)        --------->AHL20(2)   --------->YAB1      <---------DAG2 ----->TOE2(3)       <---------bZIP60(1)      ----------->GT1     <----------DOF2     <-----------GT1 ------>GT1------>NtERF2<-----------GT1----------->GT1  <---------MYB46(3)  --------->ICU4      <----   gttattttatagccgcgtttttgatgtcacattttataaatgtgttaaatgtaaatattggttacaaacttttataacatgattgttttgactttttttt  22004800                                                                                  <----------DOF2                      <---------ZAT18                                          <---------ARR11(3) ---->HSFB2a(2)       --------->ZAT18          <---------TOE2(3)         <-----------GT1 -----HSFB2a(2)     <---------At4g35610<---------At4g35610        <---------ARR11(3)   ggaagacttgactatggaattttgctcactagcattaactcatctgtttgatgtattcaaagtttgaacatctatttactaggtctttcatcttcttaaa  22004900  Previous    Next  AGI:  At5g54170.1    Description:  similar to CP5 [Arabidopsis thaliana] (TAIR:AT1G64720.1); similar to putative nodule membrane protein [Medicago sativa] (GB:AAL57201.1); contains InterPro domain Lipid-binding START (InterPro:IPR002913) Range:  from: 22002104    to: 22004434    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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