Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->LBD16                                        --------->LBD16                                        --------->ANAC46                                       <---------LBD16                                     ------>MYB46(1)                                     -------->P                                     --------->ANAC46                                     ------>MYB83                                   <---------ALFIN1                                   --------->AtMYB61                             --------->ALFIN1                            <---------SPL7                            <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           <---------ANAC58                           --------->DEAR3(1)                        --------->DEAR3(1)<------NtERF2                        <xxxxxxxxxxxxxxxxsmallRNA(s)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                      <xxxxxxxxxxxxxxxxsmallRNA(s)                     <xxxxxxxxxxxxxxxxsmallRNA(s)                   <xxxxxxxxxxxxxxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <---------ARR14(2)                 <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                     --------->ARR14(2)                 <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                 <---------LBD16                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------ZAT14   <----                 xxxxxxxxxxxxxxxx>smallRNA(i)                                 <---------At4g35610                 <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <-----------HVH21--------->MYB46(3)                        --------->ANAC46 --------                 <xxxxxxxxxxxxxxxsmallRNA(si3)                          =============================                 <xxxxxxxxxxxxxxxsmallRNA(le3)                       <------ZmHOX2a(2)      <--------                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 --------->ARR14(2)      <--------                 <xxxxxxxxxxxxxxxxsmallRNA(s)                       <---------ARR14(2)     --------->SPL7                 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <---------ARR11(3)  <---------ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              --------->ARR11(3)  <---------ANAC58             --------->GLK1(2) ----------->HVH21                   ------->GAMYB--------->MYB52(1)            --------->ARR11(3)--------->SPL7              <xxxxxxxxxxxxxxxxsmallRNA(s) <-------TEIL        ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(s)      --------->ZAT2 =============================       --------->AHL20(2)  <---------ANAC58  --------->ANAC58   --------->MYB52(1) --------->LBD16  --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)   --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------->GT1------->TEIL  <---------ANAC46  --------->ANAC58   <-----------GT1<---------ALFIN1 ===== ------------------WRI1--------->DEAR3(2)------>NtERF2   <---------ZAT2 ------>ZmHOX2a(1)<-----------HVH21 ------>GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ARR14(2)================================   gtgaaaaaataaaagaacctgtcagaccgccgtgcgaccaccccggcaaggtagaaccgagccgagtaacgatcctctacagcaccggatgcgtccgagg  21962700                                        <-------TEIL                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                <-----------HVH21                 --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(s)                 --------->ANAC58--------->WRKY18(1)               --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->WOX13(1)--------->ANAC58          <xxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(fl3)          <------NtERF2       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------MYB52(1) --------->SPL7  ------>ZmHOX2a(2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <-------TEIL <------ZmHOX2a(2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxx --ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxx ->LBD16--------->RAP2.6(2)<---------SPL7                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ========HOX2a_HOX2a   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      <---------TOE2(3) -TOE1(1)<---------RAP2.6(3)<---------ALFIN1 --------->WOX13(1)           --------->GLK1(1)--------->CCA1(2) -TOE2(1)<-----------HVH21--------->DEAR3(1)--------->MYB46(3)  <---------CCA1(2) <xxxxxxxxxxxxxxxxxx =======HOX2a_HOX2a   <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ANAC58   --------->ANAC58 ========HOX2a_HOX2a<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ANAC58   --------->ANAC58 ----- ==HOX2a_HOX2a<---------ATHB12--------->ANAC58-------->P <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------SPL7   acgatcgtagccgtcaatcacgctctagccgcacggtcatggttcatcaaccagggttaagggcctgtctcttgagaaatcaaggaaacagaggtacgag  21962800             ------>ZmHOX2a(1)           ------>ZmHOX2a(2)                                                                  -------          <------ZmHOX2a(2)                                                                   -------          --------->GLK1(2)                                                                 <--------         --------->AGP1                                                                    ----------         <---------GLK1(2)                                                                 <---------SPL7         --------->ARR11(3)                                                              <-----------         <---------ARR14(2)                                         <-----------GT1      --------->ALFIN1         --------->ARR14(2)  ----------->HVH21                  <---------MYB52(1)     <---------TGA1a       ----------->ARR10   <---------ANAC58                   ----------->GT1          <---------O2 <xxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------ANAC46 ======================================MYC_MYB xxxxxxxsmallRNA(si3)  --------->MYB59    <----------DOF2  ------------>MYB.PH3(1) ----------------->AGL1 xsmallRNA(fl3)    --------->ANAC58 <---------ATHB12      --------->DAG2          <-----------------AGL1 xxxsmallRNA(se3)  --------->ANAC58 <-----------RAV1(1)  ---------->DOF2--------->ZAT14============== -->TEIL <---------ARR11(3)<---------ANAC58              ========================================bZIP_DOF   cctatagaacagatcctgttcaagtaaggtcgtgaccaatggtgctttgtagccatatataaagcagttatttcttcactcgcttaccgatgtgggacgc  21962900  <-------TEIL                                                                                 ------ -->ANAC58                                                          ------------>CBF <---------TOE2(3) -->ANAC58                                                       --------->ANAC58    <---------YAB1 - -PCF2              --------->YAB1                      <---------ARR14(2)           <---------TOE1(3) ->HVH21           <---------ATHB12   <------------CBF  --------->ARR14(2)        --------->ICU4 <--- ----AtSPL8 ---------->DOF2        <---------MYB59     <---------CCA1(2)<---------ATHB12     <<<<<<<< ======================bZIP_DOF    *TSS       --------->ANAC46   --------->ANAC58 --------->GLK1(2) =   aaaattcgtaagaaaaaagaaatcataagcttatgggcctaattgtatacaaaacccatatatgttcaagcccaatagttagagattatggttttgttag  21963000                                                              <---------ICU4                                                             <---------YAB1                                                           --------->YAB1                                                           <---------ICU4                     --------->TGA2(2)                    --------->ICU4                    <-----------HVH21                  --------->TGA2(2)                    <-----------TGA1                  <-----------TGA1                   <---------O2                      --------->bZIP60(2)                   <---------TGA1a                   --------->ANAC55(2)                   --------->TGA1a                   --------->ANAC46                   --------->ANAC58                  --------->ANAC58                   <---------TGA2(1)                 <---------ANAC55(2)                   --------->O2                      --------->bZIP60(1)          --------->AHL20(2)                   --------->bZIP60(2)               <---------O2              <---------AHL20(2)                   --------->bZIP60(1)               <---------bZIP60(1)      <---------AHL20(2)                   --------->ANAC58                  --------->O2       --------->ANAC46                   --------->ANAC46  ==========================bZIP_DOF --------->ANAC58       *TSS      ----------------------->TaNAC69(2)             --------->TGA1a    --------->ANAC58       ------ --->MYB59         <---------bZIP60(1)               --------->ANAC58 <---------ALFIN1        ======= --------->DOF2    =============================bZIP_DOF  <---------YAB1--------->bZIP60(2)   <------ZmHOX2a(2) ---ZmHOX2a(1)    <-----------STF1 ------>ZmHOX2a(1) <---------TGA1a------>ZmHOX2a(1)    ------->TEIL <MYB98   <---------AHL20(2) <<<<<<<<<TBF1          <-----------STF1=================================HOX2a_HOX2a ============================bZIP_DOF<----------DOF2<-----------bZIP910(1)    --------->AHL20(2)   gaaaaagagttttaaattcagacgtcatttcttcttcctctttgatcagtatgccacgtcatcatcattcctccacgttattaaatatatgtatcgatca  21963100                     ------>ZmHOX2a(1)               --------->ANAC58       --------->ANAC58                                            ---        <----------DOF2       <---------ANAC46                                       --------->YAB1<- --->YAB1      --------->ANAC58       --------->ANAC58>>>>>>>>>TBF1                 <---------ATHB12 ===========================HOX2a_HOX2a    --------->AtLEC2 <------ZmHOX2a(1)     --------->WOX13(1)   tcgtctctctctttaacaagctcctctctctgatgtgaagaagccatggaagagaagaagaaggagcttgaagagttgaagtatcaatcaggttttggta  21963200                                                                                             <-------                                                                                           --------->ANAC46                                                                                          <---------LBD16                                                                                        =============                                                                                        ------>ZmHOX2a(2)                                                                                       <---------GLK1(1)                                                                                       --------->GLK1(1)                                                                                       ==============                                                                                      --------->ARR14(2)                                                                                      --------->ARR14(3)                                                                                      <---------ARR14(2)                                                                                      --------->AGP1                                                                                      <---------AGP1                                                                  --------->SPL7<---------SPL7                                   <---------MYB52(1)           ==============================HOX2a_HOX2a                            <---------DAG2                      <---------SPL7 --------->DEAR3(1)                        <------NtERF2                           ------>ZmHOX2a(1)--------->MYB52(1)                       --------->LBD16       <---------ZAT14    ===============================HOX2a_HOX2a                      --------->DEAR3(1)<------ZmHOX2a(2)--------------------->WRI1   <-----------ARR10                     <---------LBD16    ===================HOX2a_HOX2a        --------->ANAC46      <             --------->ANAC58     <-------GAMYB          <----------DOF2<----------DOF2<------ZmHOX2a(2)             --------->ANAC58  <---------At5g28300<---------ZAT18--------->MYB52(1)   --------->ARR11(3)        --------->At4g35610 <----------DOF2  --------->ZAT14 ---------->ID1 --------->ANAC46--------- ------>MYB46(3)   ------->GAMYB  <-----------HVH21 ------>ZmHOX2a(1)   ----------------------->TaNAC69(2) --------ALFIN1   --------->MYB46(3)    ===============================HOX2a_HOX2a    <---------ARR11(3)   accacttctcatcggaagcaatcgccggagctttaccgttagatcagaacagtcctcttctttgtccttacggtctttacgccgaacagatctccggtac  21963300                          ---------->DOF2                         --------->YAB1                        <---------ATHB12                      --------->WOX13(1)  <---------ICU4                  --------->At4g35610    <---------YAB1                 --------->ANAC58      --------->YAB1             --------->ANAC46       --------->REM1(1)             --------->ANAC58   ----------->GT1 --MYB52(1)  --------->ANAC58  --------------->AtSPL8                               <---------ARR11(3) ==================HOX2a_HOX2a <---------------AtSPL3                            <---------WOX13(1) ==================HOX2a_HOX2a <---------------AtSPL8                          --------->ATHB12 ----------DOF2  --------->ANAC58  <-------TEIL    --------->YAB1      <-------GAMYB--------->ARR11(3) >LBD16     ------>ZmHOX2a(1)  --------------->AtSPL3                 <---------ANAC46------>ZmHOX2a(2)   ttctttcacttctcctcgcaagctcaatcaaagaaggtacatcatcatttcaattgtaagttttggataatttcgttgaattgattgatcttcatcttgt  21963400                    --------->LBD16                   <---------ANAC46                  <---------LBD16               <---------SPL7            <-------GAMYB            <---------ANAC58            <---------ANAC58            <---------ANAC46                                       --------->ZAT2           --------->MYB52(2)                                      <---------ZAT2           <------MYB46(1)                                         <---------At4g35610           --------->MYB55(2)      --------->ARR14(2)              --------->At4g35610           <------MYB83   <-----------GT1                 <---------ANAC46           <---------MYB46(3)     <-----------HVH21  --------->ANAC46          <---------AtMYB61      <---------MYB46(3)  --------->ANAC58          <---------ANAC58         <---------MYB52(1)   --------->MYB52(1)     --------->ANAC58          <---------ANAC58        <-------GAMYB----------->GT1         ------->TEIL --------->O2        --------->HSFC1(2)        <---------At4g35610 --------->MYB46(3)    --------->WRKY18(1)         <---------HSFC1(2)   tttttttttcagttggttgtaccgggttaaaccatcggttacacatgaaccgttcaagcctcgtgtaccagctcataagaagcttgtgagtgagtttgat  21963500                                                     ------>ZmHOX2a(1)                                                   <-----------------AGL1                                               --------->HSFB2a(1)                                               <----------TaMYB80                                               <---------HSFB2a(1)                          --------->ZAT2       <---------GLK1(1)                          --------->At4g35610  <---------KAN4(1)                                   <-                <---------ARR14(2)             --------->GLK1(1)                                   --                --------->GLK1(2)             --------->ARR14(2)                         <-----------                --------->ARR14(2)            --------->ARR11(3)                         ------------                ------->TEIL                  ---------->TaMYB80                        -------------             --------->ANAC58                 <---------ARR14(2)                        <------------             --------->ANAC58                 <---------KAN4(2)                         <------------            --------->SPL7<---------At4g35610 <---------ARR11(3)                        -------------            <---------TOE1(2)        <---------GLK1(1) <---------GLK1(2)       ----------->GT1     <-          --------->TOE1(2)       <XXXXXXXXXXXXXXXXXXXXMIR398B/C        <-------GAMYB   -------------          <---------SPL7  <---------ZAT2     <------ZmHOX2a(1)         <---------ANAC46<---------At5g28300        <---------------AtSPL8   --------->ALFIN1  ----------------->AGL1  --------->ATHB12        --        <---------------AtSPL3 <---------ANAC46--------->KAN4(1)<---------WOX13(1)    <-----------GT1        --------------->AtSPL3<---------DEAR3(1)--------->KAN4(2) --------->ATHB12 --------->MYB52(2)   gcatcaaatagtcgtacgaatccgactcagcttcggtggagacctgaggatattcctgattcggagattgatttcgttgatgggttatttaccatttgtg  21963600  Previous    Next  AGI:  At5g54075.1    Description:  U3D; snoRNA Range:  from: 21962575    to: 21962935    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g54080.1    Description:  HGO (HOMOGENTISATE 1,2-DIOXYGENASE); homogentisate 1,2-dioxygenase. Identical to Homogentisate 1,2-dioxygenase (HGO) [Arabidopsis Thaliana] (GB:Q9ZRA2;GB:Q8L9I0;GB:Q9LDB8); similar to unnamed protein product [Vitis vinifera] (GB:CAO39358.1); similar to homogentisate 1,2-dioxygenase [Lycopersicon esculentum] (GB:AAF73132.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63239.1); contains InterPro domain Homogentisate 1,2-dioxygenase; (InterPro:IPR005708); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051) Range:  from: 21963095    to: 21965511    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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