Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <----------ID1            <---------ARR14(2)                                    ---------->DOF2            --------->ARR11(3)                       --------->ARR11(3)            <---------ARR11(3)                       <---------ARR11(3)            --------->ARR14(2)                      <---------GLK1(1)                            ---- -----ARR14(2)       --------->YAB1                 <---------At4g35610                          ---- ---->GLK1(2)      --------->AtLEC2          <----------DOF2<----------DOF2                      <--- ---->ARR14(2)  <-------TEIL   <---------ATHB12     --------->GLK1(1)                            <---   tttgccttcaagacgatattcatgcataacccaattactcttctctcctttcggagctcttcctttgtaaaagacaagagtcttcttcatcccaacaagt  21920600                                             <---------HSFB2a(2)                                         <----------DOF2                                           --                                   --------->LBD16                                         <---------HSFC1(2)                                  <---------HSFB2a(2)                                      --------->HSFC1(2)                    ------>ZmHOX2a(2)   <---------ANAC58                                 --------->ARR14(2)                   <------ZmHOX2a(2)    <---------ANAC58                            <-----------HVH21                   <---------GLK1(1)   <---------At4g35610  <---------At4g35610    <---------O2  ----                   --------->GLK1(1)   --------->At4g35610<-----------RAV1(2)      ==================                  <---------ARR11(3) <--------P         --------->TOE2(3)          --------->O2<----- ----->ZAT14      --------->ARR11(3)<---------MYB52(1)------>MYB46(1)              --------->TGA1a -- ----->ZAT18      <---------AGP1 <---------LBD16   --------->MYB46(3)              <---------TGA1a<-- ------ZAT14     --------->RVE1(1)--------->HSFB2a(2) ------>MYB83     --------->MYB52(2)<---------ARR14(2) ------ZAT18  ---------->DOF2<----------DOF2 --------->HSFB2a(2)     <---------MYB52(1)  <---------GLK1(2)   gcacaagtctttgaactaaagatctctctgtcttttccggtagctttccagtaaccagcctcagttgctctgttagttctcagtcccgtcggatacttcc  21920700              --------------->AtSPL3              --------------->AtSPL8              <---------------AtSPL8 <---------LBD16 --------->HVH21                                                                 --------->TOE1(3) ----->LBD16  <---------------AtSPL3                                   <---------GLK1(1) ====================bZIP_DOF                                         --------->ARR11(3)       ------ ----LBD16---------->DOF2                                             <---------ARR11(3)   ---------- ------->WRKY18(1)                       --------->At4g35610        --------->ICU4  <---------ICU4 ---------HVH21          <----------DOF2 <---------At4g35610      ---------->DOF2--------->TOE2(3)   ggtcacggaggctaaagaagtaccattctttctctcccatcttagctctccctaagtaacattgagagtaaagatttcagaaaccttaattacaaaagaa  21920800                                                                                               <-----                                                                                             --------                                  --------->HSFC1(2)                                         --------                                  <---------HSFC1(2)                                         <-------                             --------->LBD16                                                -------->P                           <---------LBD16                                                 --------->MYB52(1)          --------->MYB52(2)<---------LBD16                                             --------->ANAC58  --------->ANAC58     <---------ANAC58                                                 --------->ANAC58  --------->ANAC46     <---------ANAC58                     <------ZmHOX2a(2)    <---------ANAC58  --------->ANAC58   <---------AHL20(2)                    --------->ARR11(3)    <---------ANAC58 --- --->ARR11(3)        <-----------GT1                       <---------ARR11(3) --------->ANAC58------- >DOF2  <---------MYB52(1)--------->MYB52(1)    <---------ALFIN1              --------->ANAC58-------   ctacaagtaagttagttttgtattttcttaccgggaagttgccaaggctcacacttgttgagatcaacttctgcgatggcacggcttgagaagcaaccgt  21920900         --------->LBD16                                                             ------>NtERF2        <---------ANAC46                                              <---------ARR11(3)    <----------DOF2                                                   --------->ARR14(2) <------ZmHOX2a(1)                                                    --------->ARR11(3) ------HVH21                                         --------->TOE1(3)<---------ARR14(2) ->MYB46(3)                                          --------->TOE2(3)<---------ARR14(3) ->DEAR3(2)          --------->ATHB12               ----------->RAV1(2)--------->CCA1(2) -----AtMYB77       --------->ICU4       --------->LBD16              --------->ARR14(3)           -- ------>HSFB2a(2)   <---------YAB1      <---------ANAC46        --------->ALFIN1     --------->LBD16 >GAMYB<---------LBD16                  <---------ANAC58      --------->LBD16       --------->ANAC46 -->DEAR3(1)   ----------->GT1          <---------ANAC58    <---------LBD16        <---------LBD16<--   cgaggactttgcggagaaggtaatgagtgatgagctcttcgtccgtgggatgaaacctgaaacccggtggaagatattggctgtctccgccatggtcgta  21921000          <---------KAN4(2)         <---------GLK1(2)            <----------DOF2      --------->ANAC58           ---------->DOF2      <---------ANAC55(2)      ------>ZmHOX2a(2)      --------->ANAC55(1)     --------->CCA1(2)      --------->ANAC58        <------ZmHOX2a(2)      --------->ANAC46       <---------AGP1      --------->ANAC55(2)    <---------ARR11(3)     <---------LBD16         --------->AGP1                                                ---------- --------->GT1               --------->ARR11(3)    ----------->GT1                        ----------- -------ZAT6             ---------->DOF2         *TSS             <------ZmHOX2a(1)   >>>>>>>>>TBF1--   gtggtaatacggaatgtccattaagaagaaagatctaaagcttttgtttgagagagaaaaaaccctaaggagactcaaatgttttgaagaagaagataaa  21921100               <---------MYB46(3)               <------MYB46(1)               <------MYB83               <---------HSFC1(2)               --------->HSFC1(2)        --------->YAB1               --------->HSFB2a(1)       <---------ICU4       <---------AHL20(2)               --------->ICU4      <---------AHL20(2)       <---------YAB1              ----------->GT1        <---------YAB1      <---------AHL20(2)          <------NtERF2<---------AtLEC2      <---------AHL20(1)        <---------ANAC58         <---------AHL20(1)                      ----      --------->AHL20(1)        <---------ANAC58         <---------AHL20(2)               >>>>>>>>>EIN3 ->GT1--------->AHL20(2)        --------->ALFIN1       <---------AHL20(2)               <<<<<<<<<<<<< >GT1--------->YAB1             <---------ANAC46       <---------YAB1            <---------AHL20(2) - --------->GT1 <---------HSFB2a(1)--------->ALFIN1----------->GT1           <---------AHL20(2)   <---   taggttaatataatggatggttcttgagtaaggggcgtggtaataatgtggatggatattattttttggttttattagtttattttttttatacattggg  21921200                                                                <---------AHL20(2)                                                                -------->HAHB4                                                                -------->ATHB1                                                                <--------HAHB4                                                                --------->ATHB51                                                                --------->YAB1                                                                <---------ICU4                                                               <---------ATHB51                                                             --------->YAB1                                                             <---------ICU4                                                            <---------ATHB51                                                            --------->ICU4 --------->AHL20(2)                                                            --------->AHL20(2) ----------->GT1                                            <---------AHL20(2) <------MYB46(1)                                           <---------AHL20(1) <------MYB83                                 --------->ALFIN1 <---------YAB1 ----->ARR14(2)                               <--------P  --------->YAB1----------->GT1             < <<<<LFY                         <----------DOF2     ----------->GT1<---------AHL20(2)            --- -------->MYB59                <---------HSFC1(2)  ---------->DOF2<---------YAB1          <---------ANAC46 ------ARR14(2)                --------->HSFC1(2)<---------ZAT6--------->ICU4        ---------->DOF2-   atttggtaaatctaaaacggcgaaatagagggaagctttttttttggggtagtgaaagtaaaataattattaaaagattaaaaaccagaaagtcgtagag  21921300         <---------AHL20(2)        --------->AHL20(2)        <---------AHL20(2)       <---------YAB1    ---------->DOF2       <---------------AGL15   <---------------AtSPL8     --------->AHL20(2)<---------AHL20(2)     --------->YAB1    --------->YAB1    <---------YAB1     --------->AHL20(2)                 <-----------RAV1(1) <---------ANAC46    --------->ICU4  --------->YAB1                     --------->GLK1(2)      <---------ANAC58 <---------YAB1  --------->YAB1<---------------AtSPL3 <---------GLK1(2)       <---------ANAC58   ---- ---------ARR11(3) <---------YAB1            <----------DOF2             <---------ANAC58        ---- -------->GT1 ----------->GT1  --------------->AtSPL3<------ZmHOX2a(1)   <---------ANAC58      ------ -------->ARR11(3) --------->ICU4  <-------TEIL --------->YAB1         ------>NtERF2  ---------->DOF2   aagataattataaatttagtaataataaaaagacaggtacgtctactctttcataggaatctgtggttttctctgccttgtcttgtagtaaagagagcaa  21921400                                                                                           <---------ICU4                                                                                           --------->YAB1                                                                                          <---------ATHB12                                                                                          --------->ICU4                                                                                       <---------AHL20(2)               --------->TGA2(1)                  <---------MYB59                      --------->AHL20(2)               --------->bZIP60(1)             <-----------GT1                        --------->AHL20(2)        <---------GLK1(2)                 <---------AHL20(2)                       <---------YAB1 --- ---------->DOF2                       <---------AHL20(1)                         --------->AHL20(2) ----->ANAC58  <---------bZIP60(1)     --------->AHL20(1)                         <---------AHL20(2) ----->ANAC58<-----------GT1           <---------ARR11(3)                        --------->AHL20(2) ---->DOF2<---------ICU4         <-----------GT1 --------->ANAC55(2)     <-----------GT1--------->WOX13(1)   agccaaagcagattattacatcacatttttgagtttatcgatatattttttacataactcgagattgttttaaaattacaaaattaaaattaatcatgaa  21921500  Previous    Next  AGI:  At5g53950.1    Description:  CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor. Identical to Protein CUP-SHAPED COTYLEDON 2 (CUC2) [Arabidopsis Thaliana] (GB:O04017); similar to CUC1 (CUP-SHAPED COTYLEDON1), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39323.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) Range:  from: 21919192    to: 21921049    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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