Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     ------>ZmHOX2a(1)                                 ------>ZmHOX2a(2)                                 =======================HOX2a_HOX2a                                <------ZmHOX2a(2)                                ========================HOX2a_HOX2a                               --------->ARR11(3)                               <---------ARR14(3)                               --------->ARR14(3)                               <---------ARR14(2)                     <------ZmHOX2a(1)                               <---------ARR11(3)                   <---------TOE1(3)              --                               --------->ARR14(2)        ---------->DOF2                      -------                             ----------->ARR10   <------ZmHOX2a(1)  <---------TOE2(3)    --------->YAB1  <-------TEIL        ---------->DOF2  <----------DOF2--------->TOE2(3)            <---------ALFIN1<-   taaatgcatagtcttcatacaagggaaagagaagatcctgcctttatccaaggacacctcaaagagtcttaaggaaaccagtgcctcacatttataaaga  21807500                                                   <---------SPL7                                                  ------>ZmHOX2a(2)                                                --------->ARR11(3)                                                <---------ARR11(3)                                                <---------AGP1                                                <---------ARR14(2)                                          <-----------RAV1(1)                                         --------->ARR11(3)    --------->At4g35610         --------->ANAC58                                         <---------ARR11(3) --------->ZAT2                 --------->ANAC46               ------->TEIL           --------->HSFB2a(2)   --------->At4g35610            --------->ANAC58      ------->TEIL                    <---------HSFB2a(2)   <---------ZAT2      <---------ANAC58 ------->AHL20(2)                  --------->ARR11(3)       <---------At4g35610 <---------ANAC58 -->ICU4    <---------YAB1<---------ARR14(2)    --------->ARR14(2)     --------->WOX13(1)---------->DOF2 --------AHL20(2)         --------->ARR14(2)   <---------CCA1(2) ----------->RAV1(1)   --------->CCA1(2)   ttaaaatgaatcttatgaaactgaggcagaaactgaacatctagatgttggatcttacgcttagctgcagcatcaatccatgacttgagataaaagccat  21807600                                                                     --------->YAB1                                                                   ------>MYB83              <-------                                                                   ------>MYB46(1)---------->DOF2             --------->YAB1                                     <---------ANAC55(2)   --------->ARR11(3)         --------->ZAT6                                         --------->ANAC55(2) <---------TOE2(3)   cttcttcattttcactaatagttaacttgagcttgtttatgcatagaaccctattggaatcgaaatacctatcacaaaaactcacaaaggtattgaaatc  21807700            --------->GLK1(2)            <---------ARR14(2)                                                                      <           --------->GLK1(1)                                                                       --        --------->HSFB2a(2)          --------->ANAC58                                              <-       <---------LBD16               --------->ANAC58                                            ----      <---------LBD16              ---------->DOF2                                             <-----   --------->ARR11(3)<---------------AGL15                                              <----------DOF2  <---------GLK1(1) ----------------->AGL1                                              ------>ZmHOX2a(1)  --------->GLK1(1) <-----------------AGL1                  ----------->GT1            --------->TOE2(3) --GLK1(1) <---------GLK1(1) <------ZmHOX2a(1)             <---------ANAC46         <---------ARR11(3)   agagaaatctcgggaatccaattccaaactaggaaccaaaagccagagacttctccatcttgtggataaaacgcttgtcttaacaacatcctttgtagga  21807800      <---------ANAC55(2)      --------->ANAC55(2)    <---------AHL20(2)    --------->AHL20(2) ---------YAB1 ------->ARR11(3)                                                                  --------->ANAC58 --------ARR11(3)                      <---------ANAC58                   <----------DOF2 ------->GT1                           <---------ANAC46              <-----------GT1        <-------- -ZmHOX2a(1)               <-------TEIL<---------ANAC58    --------->MYB46(3)      --------->ANAC58<-   agataattaagtatttgacataacaaagattcatagaattggcttattctgtcttccttcaacctctgattcaacccttttgaacaagcctgttttgatt  21807900                                                  <---------------AGL15                                                 <-----------------AG                                                 <-----------------AGL2                            <-                                    <----------DOF2   <------------CBF                           ----                    <---------ICU4  <---------DAG2--------------->AGL15               <------MYB83 --                    <---------AHL20(2)           ----------------->AGL2               <------MYB46(1) -YAB1------>ZmHOX2a(1)<-----------GT1           ----------------->AGL3              --------->MYB59 ---------DOF2      --------->AHL20(2)           <-----------------AGL3            <---------MYB52(1)   tctttctcctcaccatgtctaattttttctctagataactttatctgcataactaaaattggaaaacacaagtttcagagagacagtttggttttgaatt  21808000                                    --------->YAB1                                   <---------ATHB12                                 --------->WOX13(1)                               ------------>CBF                         ------>MYB83                         --------->MYB52(1)                                    <---------TOE2(3)   <-------TEIL          ------>MYB46(1)                        --------->ARR11(3) --------ARR11(3)       --------->MYB55(1)              ----------->GT1 <---------ATHB12 ------->ARR10         <---------MYB59  <---------GLK1(2)   ---------->DOF2 <---------MYB52(2) ------->ARR11(3)      <---------MYB46(2)        --------->ZAT14<---------ARR11(3)          <-------TEIL   agatattcattcaagttcgacttaacctaacgtcccaatcaaaattctcagtctagtaatgtaaaagatttcaaatcaactaaggcttaaaacatacatg  21808100                                                                                       --------->ARR11(3)                    <-------TEIL                                                    >>>>>>>>>TBF1  <-                   --------->GLK1(2)          ----------->GT1                    >>>>>>>>>TBF1 ------            --------->YAB1                   <---------MYB46(3)               >>>>>>>>>TBF1 <--------           ----------->TBP<----------DOF2   <---------ANAC46            >>>>>>>>>TBF1  <---------ARR11(3)    ---------->DOF2--------->CCA1(2)     <---------YAB1  --------->MYB52(1)>>>>>>>>>TBF1   --------->MYB52(1)   gtgaccaaaagctataaaaagattcaggcttttggacctgtttctgatgggtaagaacaaaacgatatgtagaagaagaagaagaagaagaacttacggt  21808200                                                                        ------>NtERF2                                                                       <---------bZIP60(1)          --------->ANAC58                                             --------->bZIP60(1)          --------->ANAC46                                        <---------ICU4          --------->ANAC58        <-----------GT1                 --------->YAB1   <---------ANAC55(2)          <---------ANAC58                 --------->ICU4   --------->ANAC55(2)    <---------TOE1(3)                      <---------YAB1                ------   ----------->GT1        <---------TOE2(3)                    --------->YAB1                 -------  <---------TOE2(3)    <---------ATHB12                        <---------ICU4    ----------->GT1 <---  --------->MYB59    --------->WOX13(1)                       <<<<<<<<<ARR1     <---------HSFB2a(2)  <---------TOE2(2) <---------WRKY12                          <---------ATHB12  --------->HSFB2a(2) --------ANAC46     <---------WRKY38(1)                       <<<<<<<<<ARR2 <---------MYB52(1)<------ --->At5g28300     --------->WRKY18(1)  <---------AHL20(2)--------->ZAT14<------NtERF2     --------->ANAC46 -At5g28300 ---------->DOF2     <---------ANAC58   <------ZmHOX2a(1)----------->TGA1   <---------AHL20(2)   gacttaggtaatacgaaagaggtcaatgaaggtttcttacatttttttttagaggaccagtacaatcataatgacgccgtttctagtaaataaacgccgt  21808300            <---------ANAC55(2)            --------->ANAC58        <----------DOF2        =====================================bZIP_DOF      --------->ZAT14              --------->TGA1a      <---------ZAT14              <---------O2     ------>NtERF2--------->ANAC58  <-----------GT1       <------------CBF         <---------At4g35610                                < --->LBD16  --------->ANAC46       --------->O2  --------->At4g35610                               <- -->DEAR3(1)--------->ANAC55(2)    <---------TGA1a --------->ZAT18            --------->CCA1(2)  <--- ------MYB46(3) <------------CBF   --------->ANAC46<---------ZAT18         --------->ANAC46     ----- ---ANAC46  --------->ANAC58       --------->bZIP60(2)           --------->ANAC58          <---------YAB1   ggtttcactgctctacgtaattggagtattgaaaaccacgtcgttttgatcagcggactagtctctcaagctattctaagaaacgaggtcgttttgattc  21808400  Previous    Next  AGI:  At5g53640.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G25850.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 21803225    to: 21807916    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version