Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     ------->GAMYB                                                                  <---------MYB52(2)                                                                  --------->ANAC58                                           --------->ALFIN1       --------->ANAC58                                         <-----------RAV1(1) --------->ANAC58                                --------->ANAC46             --------->ANAC58                                --------->ANAC58             --------->ANAC46               ---------     ------->TEIL               --------->ANAC58----------->GT1 --------->MYB52(1)   ---------->DOF2   cccattgaatctagtctctctgagacatttacacaaacaacttatgtgggtcgataaatgtgtaagcaacgaaaccaaaaacccatcaaaagagaagaaa  21746100                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)                                                                                --------->GLK1(2)                                                                        ----------->RAV1(1)                                                                   ------>ZmHOX2a(1)            -----                                                               <---------ARR14(2)   --------->LBD16                                                     ----------------->AGL3    --------->RVE1(1)<----                                                   =======================HOX2a_HOX2a           <----                                                   <------ZmHOX2a(2)   <----------ID1           <----                                                  <---------ARR11(3) --------->ANAC58           <----                                                  --------->ARR11(3) --------->ANAC46          <-----                       --------->At4g35610        <---------AGP1 ------>ZmHOX2a(2) --------->ANAC58                       <---------At4g35610    ---------->DOF2  --------->ARR14(2)  <---------ANAC55(2)             <---------ZAT14         ----------->RAV1(1)       <---------ARR11(3)  --------->ANAC46             --------->ZAT18        <xxxxxxxxxxxxxxxxsmallRNA(s)<------ZmHOX2a(2)  --------->ANAC58           <---------At4g35610   --------->At4g35610------>ZmHOX2a(2)--------->ANAC58    XXXXXXXXXXXX ----------->GT1      --------->GLK1(2) ---------->DOF2        --------->ARR11(3) <---------LBD16 -->GT1  <-----------GT1         <---------At4g35610======================HOX2a_HOX2a ----------->RAV1(1)   aaatggtttatttagcacacagagaagctgaaatcagcacaacaaagtgaaagatctcatttttagatcctaagcaacaaaaaatccgcaacaaaaatgc  21746200     ------->MYC3                                             <---------DEAR3(2)     <-------MYC2                                             --------->MYB55(2)     <-------MYC3                                             <---------MYB46(3)     ------->PIF5                                             <------MYB46(1)     <-------PIF5                                             <------MYB83     ------->MYC2                                            --------->MYB111(1) ---->ANAC55(2)                                   <---------ANAC58 -----ANAC58                             --------->AHL20(2)  <---------AtMYB61 -----ANAC55(2)                      --------->ICU4  <-------TEIL<-------TEIL -----ANAC46            --------->AHL20(2)        <---------ANAC55(2) -----ANAC58            <---------AHL20(2)        <---------ANAC46                              <---- ------------------TaNAC69(2)----------->GT1      <---------ANAC58                              ----- XXXXXXX>MIR156G        --------->AHL20(1)   <---------ICU4 <--------P <---------REM1(2)     <-------   gtgagcacgagcatcaccaattcaaattttttggtaacaaagattaaaaattgcgtacatgggttggttcgtcttcacgaggtttcttcgaaattggaac  21746300                                                                                    ---------->DOF2                                     ---------->DOF2   --------->AtMYB61       ----------->GT1 -----MYB52(2)           <---------MYB46(3)     --------->ANAC58              --------->DAG2 ---->MYB46(3)     ----------->RAV1(1)          --------->ANAC46             ---------->DOF2 ---ID1 ---------->DOF2 --------->ALFIN1        --------->ANAC58       ----------->GT1          <----   aaacacatcccaaagaagtagcaacagtggtagagagtctaaagaaacacacacaaaccaaaaccagagagaattgtaaaaaagtaaaaagagagaaact  21746400                                            <---------YAB1                                            <---------AHL20(2)              ---------->DOF2           <---------ARR11(3)       ---------->DOF2                  --------->ARR11(3)                         >>>>>>>>>TBF1  --------->ATHB12                     <------ZmHOX2a(1)                  <---------TOE2(3)  --------->ATHB51               <------ZmHOX2a(2)            ---------->DOF2   >>>>>>>>>TBF1 <---------YAB1                  =============HOX2a_HOX2a --------->REM1(2) <------ZmHOX2a(1)       < ------DOF2<----------ID1      <------ZmHOX2a(1)   <---------GLK1(1)     --------->YAB1            <-   tttattattgaaagggaaaagagaagagaagaaggatcaaaggatttttattgaaatctgtgaagaaagagacaataaggaagaagaagaagatgggatt  21746500                                        ----------->HVH21                                    <---------ANAC46                                    <---------ANAC58                                    <---------ANAC58           <-----------GT1                             --------->GLK1(2)                <-----------GT1                             <-----------ARR10          --------->TOE2(3)                             <---------ARR14(2)         <---------DAG2                             ------->TEIL     <---------MYB52(1) --------->LBD16             <---------ARR11(1)    <----------DOF2               ------------>CBF ---------HSFB2a(2)          --------->ARR14(2)   <---------ANAC58              <-----------GT1 --------LBD16            *TSS  <----------DOF2   <---------ANAC58         <----------DOF2   gtccggagggaatagagagtttttggagacgaatctttgtgtgtgaccgtttgctttgccttatttaacctctctgtctttatttcaattttgttttctt  21746600                                                                   <--------HAHB4                                                                   <---------ICU4                                                               <---------YAB1            <----------DOF2                                                              --------->AHL20(2)        ------>ZmHOX2a(2)                   <---------AHL20(2)                        --------->YAB1             =============                  <---------AHL20(2)     ------>MYB83        <---------ICU4            <---------RVE1(1)                  --------->AHL20(2)     ------>MYB46(1)    <---------YAB1             ==============               >>>>>>>>>GT-2           <---------MYB59   <---------AHL20(2)            <------ZmHOX2a(2)             <---------MYB52(1)    --------->ANAC58      --------->AHL20(2)           --------->ARR11(3)            ----------->GT1        --------->ANAC58      --------->AHL20(1) <---------YAB1       <---           --------->MYB59         --------->ANAC46      <---------AHL20(1) ----------------->AGL3<--        --------->KAN4(2)        --------->ANAC46    --------->ICU4--------->ATHB12   --------->AGP1       <---------KAN4(1)    --------->WOX13(1)  <---------ANAC46  <---------YAB1      <---------ARR11(3)       --------->KAN4(1)    <-----------GT1     <---------ANAC58  --------->ICU4      <---------AGP1     <---------GLK1(2)      --------->YAB1      <---------ANAC58--------->YAB1       <---------CCA1(2)   ctcttcagattattcggtaattaaatctattaatcacacgaccaaatatttcgtagtaattaattataatcatttgttatcaattttagatctttttttt  21746700        <---------ZAT18                    <---------ICU4      <-------PIF5                        <---------ATHB12      ------->PIF5                     --------->AHL20(2)    ------>ZmHOX2a(1)                  <---------AHL20(2) ==========HOX2a_HOX2a              --------->YAB1                     <---------AHL20(2) ==========HOX2a_HOX2a          <---------ICU4                   <------ZmHOX2a(1) --------GT1                   <---------ATHB12            --------->ATHB12     --------->AHL20(2) ---------GT1      --------->ZAT6----------->GT1          <---------YAB1        <---------AHL20(2)   tatctcctcgtgctctctgtaatactactactaatcagtaataaatcattccctctgtatatgattaggagaattaatacatttatatgtgattctattg  21746800                                                   <---------YAB1                                                  <---------AHL20(2)                                                <---------AHL20(2)                                                <---------YAB1                                             --------->ARR11(3)                                       <---------AHL20(2)                                       --------->AHL20(1)                                       --------->AHL20(2)                       <---------AHL20(2)    <---------ARR11(3)                       --------->AHL20(1)   --------->YAB1                       --------->AHL20(2)  <---------YAB1                 <---------AHL20(2)    <---------AHL20(1)                                          --                 --------->AHL20(2)   --------->YAB1                                      <---------TOE1(3)    <---------AHL20(2) <---------AHL20(1)--------->YAB1                                   <---------TOE2(3)    --------->AHL20(2)--------->AHL20(2)<---------AHL20(2)                <---------MYB52(1)  -------   aaacatttttttaagttatttaaattttattttttatgaaatataatgatattattttagagttttattcattttcgttacattatagttttaagggtca  21746900     <---------AHL20(2)                                     <-------TEIL                <---------ANAC58    <---------YAB1                                      --------------->AtSPL3          <---------ANAC58  --------->ATHB51                                      <---------------AtSPL8     <---------ARR14(2)  <--------HAHB4                                  <---------AHL20(1)          ----------->RAV1(1)   <  -------->ATHB1            <----------DOF2       --------->ARR11(3)         <---------ZAT18       --  <---------ICU4         --------->GLK1(2)        --------->AHL20(1)         --------->ZAT18 <------- <---------YAB1     ----------->ARR10           --------->ARR11(3)           --------->RAP2.3(3)  <-- --------->ICU4  <---------ANAC46               <---------ARR11(3)         --------->PCF2  <---------ICU4 ------->YAB1    <---------ANAC58               <---------AHL20(1)  <-----------RAV1(1) <---------AtLEC2 -->WRKY18(1)    <---------ANAC58               --------->AHL20(1)<----------DOF2  --------->ARR14(2)   agaattattaatcgtttatgcgtagagtttctttttgatattttgaagaaaatattttgtggtacatgctttgttggagcccacatatttgcatgatgac  21747000  Previous    Next  AGI:  At5g53500.1    Description:  WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G24320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48622.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 21742667    to: 21746526    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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