Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            =================HOX2a_HOX2a                                          --------->CCA1(2)                                          ========================HOX2a_HOX2a                             --------->ANAC58       ------>ZmHOX2a(1)                             --------->ANAC58      --------------->AGL15                            <---------LBD16    <---------ZAT2                         --------->ZAT2   <------ZmHOX2a(2) ---------->DOF2                         <---------ZAT2  --------->AGP1    <------ZmHOX2a(1)   --------->YAB1        --------->At4g35610  --------->ANAC58 ----->GLK1(2)           <---------At4g35610  --------->ANAC58                     --------->REM1(1) ----->ANAC58  --------->ANAC58  --------->ANAC58  <---------------AGL15   <-----------GT1 ----->ANAC58  --------->ANAC58  --------->ANAC58 ----------------->AGL1 <----------DOF2    <--------   agctattgtaagagtgcaagcacagagagctgcgcaagcgatagatccaagctccttaagaggaaagagactcttctttacaccttcaccattttctctg  21741500                                                                   <---------GLK1(2)                                                                   <---------ARR11(3)      <---------At4g35610                   <---------DAG2         <---------ARR14(3)      <---------ZAT2                  --------->ZAT6               --------->ARR14(3)      --------->ZAT2                  --------->ANAC46             --------->ARR11(3)      --------->At4g35610      <------ZmHOX2a(2)                 ----------->ARR10     ------>ZmHOX2a(1)        <---------ARR11(3)             --------->ANAC46     =================================HOX2a_HOX2a            --------->ANAC58   ----------->RAV1(2)        --------->ARR11(3)             --------->ANAC58         --------->YAB1 <-----------GT1         <---------ATHB12   <----------DOF2---------->DOF2           <-------TEIL ---GT1          ---------->DOF2     <-------TEIL      <----------DOF2             --------->YAB1   ttttctcctgctgagaacataatgcaaatcaagatcacatacactactttagcttcactttaaaagcaagattttgacataacaatattcataaacccat  21741600                                                                                              ------>ZmHOX2a(2)                                                                      --------->ANAC58       <------ZmHOX2a(2)                                                                   >>>>>>>>>SPL7            <--------                                                                   --------->SPL7           <--------                                 --------->GLK1(2)                 >>>>>>>>>SPL4            ---------                                <---------GLK1(2)              --------------->AtSPL8       ---------                                --------->ARR11(3)             --------------->AtSPL3       <--------                                <---------ARR11(3)           --------->ARR14(2)             ---------                       --------->DAG2                        <---------ARR14(2)     --------->At4g35610            --------->ATHB12---------->DOF2         <---------HSFB2a(1) ------->GAMYB       ---------   --------->ICU4     ---------->DOF2               --------->HSFC1(2)--------->ANAC58     <---------GLK1(1) --------->YAB1   <---------TOE1(3)                 <---------HSFC1(2)--------->ANAC46     --------->GLK1(1) ---------->DOF2  <---------TOE2(3)                 --------->HSFB2a(1)--------->MYB46(3) -----------   ctataaagatgaattcattgaaggtaaagctaaagattcttgaaaatacttagaaatttcgaagaaccgtacaaccaagaagaagtagcagagagatctt  21741700                                                                               <---------TOE2(2)                                                                              <------NtERF2                                                                           <---------LBD16                                                                         <---------O2                                                                         --------->TGA1a                                                                         --------->O2                                                   <---------ZAT6        --------->ANAC46                                                   ----------->GT1     --------->MYB52(1)     --------->WOX13(1)                        --------->ZAT18  ------>ZmHOX2a(2)    <---------------AGL15                      <---------ZAT18 --------->CCA1(2)    --------------->AGL15                      <---------ZAT14 <------ZmHOX2a(2)   ----------------->AGL3                      --------->ZAT14<-----------ARR10<---------AtMYB61 -ARR14(2)                                <---------ZAT2      --------->ARR14(2) -ARR14(3)                                --------->ZAT14     <---------ARR11(3) >ARR14(3)                                --------->ZAT2      <---------ARR14(2) >ARR11(3)                                <---------ZAT14     <---------AGP1<---------DEAR3(1) -ARR11(3)             ---------->DOF2 --------->LBD16        --------->ARR11(3) >ARR14(2)        ----------->GT1    <---------LBD16          --------->AGP1<---------ANAC46      --- >AGP1   ---------->DOF2            <---------At5g28300   =========================bZIP_DOF      ---- >ARR10 --------->AHL20(2)          --------->MYB52(1)    ---------->DOF2<---------TGA1a      -------   gaaaaaccaattaaagcagagagaaaaaagatgacatttaccggagcagtgtactgttactaaagatctaggctcacggcggaggtttacagagaaaaac  21741800                                                                                              -------       --------->CCA1(2)                   --------->AtLEC2                                  <------- ------>At5g28300                     --------->ANAC58              *TSS          --------->TOE2(3) ------->GT1                   <------ZmHOX2a(1)           --------->ARR11(3)     --------->YAB1 -->MYB52(1)    ------>ZmHOX2a(1)     --------->ANAC58     <---------GLK1(2)     --------->MYB46(3)   ggtgaagagatttgattcctcgtgaattgaacaggaagcgaagccatggaagtgtgtttcagatttttgttcgaacttggacaaccatagagttttatca  21741900                            ----------->HVH21                          <---------ANAC58                     <---------TGA1a                     <---------bZIP60(2)                     --------->bZIP60(1)                     --------->TGA1a                     <---------bZIP60(1)                     <---------O2 <---------ARR11(3)                     <---------ANAC58                     <---------ANAC58                     <---------ANAC46 <---------YAB1                     <---------ANAC55(2)                     --------->O2<---------At4g35610                     --------->ANAC55(2)                  ----------->TGA1--------->ARR11(3)                                  <------MYB83 --         <------ZmHOX2a(2)<---------AtLEC2                                            <------MYB46(1)  <---------MYB52(1)----------->STF1--------->YAB1                              <---------YAB1     <- ----->CBF        ----------->HVH21<------ZmHOX2a(2)              <------------CBF   --------->MYB59 ----GT1--------->ARR11(3)<---------ANAC58           <-----------GT1      --------->ICU4          <--   attcgttatggatcatgcctatgacgtggcatgacagatcataatatcagactatatacgatttagcccattgggcctgattactatttggtccatttgt  21742000                                            <---------MYB46(3)                                            ----------->GT1                                         --------->MYB52(1)          --------->YAB1          --------                                     ------>NtERF2               --------->ATHB12           ---------                                  --------->ZAT14               <---------AHL20(2)   --------->ANAC46                                  <---------ZAT18               <---------YAB1       --------->ANAC58 ------->ARR11(3)                 --------->ZAT18            --------->AHL20(1)      --------->ANAC58 --------ARR11(3)                 <---------ZAT14   --------->ARR11(3)            ------->GAMYB -------CCA1(2)    --------->AHL20(2)<---------At4g35610     <---------ARR11(3) --------->ANAC46<----   aaatctttcatcggttttggatataatatcaagtagtgcagcccatcggttaaacatctacagtatattattgatgacttctaacccacgcaaaatatat  21742100                     --------->AHL20(2)                <---------AHL20(2)               --------->ANAC55(2)                   <---------AHL20(2)               --------->ANAC58            <---------AHL20(1)             <---------AHL20(1)               --------->ANAC55(1)         --------->AHL20(2)        --------->AHL20(2)    --------->AHL20(2)               ----------->GT1             <---------AHL20(2)    <---------YAB1 --------->AHL20(2)               --------->ANAC58         --------->AHL20(2)      <---------TOE2(3)          --------->ICU4      --------->AtLEC2                  --------->AHL20(1) <---------AHL20(2)   <---------AHL20(2)  <---------At5g28300<---------AHL20(2) <---------AHL20(1)<---------YAB1  <---------AHL20(2)        - <-----------GT1    --------->ICU4     <---------AHL20(2)<---------AHL20(2)<---------AHL20(2)  <----- ->AHL20(1)    <---------ANAC55(2)    --------->ICU4<---------AHL20(1)    --------->AHL20(2)<-------- >AHL20(2)     --------->ANAC46  ----------->GT1    --------->AHL20(1)    --------->AHL20(1)<-------- -----YAB1    <-------TEIL       --------->YAB1 <---------AHL20(2) <<<<<<<<<MYB98 <---------YAB1  ---   gatttaccatgctaaatacgtaattaatagcttaatagtaaatattttattttatatatttttatttatgttaaaataaaatttatatttgtatttatta  21742200                             <---------YAB1                            <---------AHL20(2)                            --------->AHL20(1)                            <---------AHL20(1)                   --------->AHL20(1)                           --------->AHL20(2)                    <---------AHL20(2)                          <---------YAB1                         --------->AHL20(2)                        -------->HAHB4                          --------->AHL20(2)                        --------->YAB1                   <---------RVE1(1)                        <---------ICU4                   <---------CCA1(1)                       <---------ATHB12                 --------->AHL20(1)                       --------->ICU4                   --------->ARR11(3)                    --------->AHL20(2)              ---------->DOF2                    <---------AHL20(2)       <---------At4g35610<---------AHL20(2) -------->AHL20(2) <---------YAB1           --------->ANAC58 --------->AHL20(2) ------GT1       --------->YAB1             --------->ANAC58 <---------AHL20(2)            --------->HSFB2a(2) -AHL20(2)  <---------AHL20(2)   <---------AHL20(2)<---------AHL20(2)                <---------ARR11(3) -ICU4      --------->AHL20(2)   --------->AHL20(2)--------->AHL20(2) --------->ATHB12     <---------HSFB2a(2) ------>TOE2(3) <---------AHL20(2)    <---------ANAC46  <---------ARR11(3)           --------->ARR11(3)   cattaaaaacgattttaaataataaatgattatatttattttgtgtaagctaataaaagatattaaaaaaattgattagtatgagaacatcttctacaaa  21742300                                                                                 <---------AHL20(2)                                                                                 --------->YAB1                                                                                 --------->AHL20(2)                                                                              --------->WOX13(1)                                                                           <--------ZAP1                                                                        <---------HSFB2a(2)                                                                        --------->HSFB2a(2)                                 <---------YAB1                      ------>ZmHOX2a(1)                              <---------YAB1                       --------->HSFC1(2)                       --------->ANAC58                            ------>ZmHOX2a(2)                       --------->ANAC58                            <---------HSFB2a(1)                 --------->CCA1(2)       --------->ARR11(3)        <---------HSFC1(2)            ----                --------->ARR14(2)       <---------ARR11(3)        --------->HSFB2a(1)          <----                <---------ARR14(2)       <---------GLK1(2)        <------ZmHOX2a(2)   ----------->GT1 <---------TOE2(3)    <---------LBD16  ----------->ARR10         <---------ARR14(2)  ----------->GT1< <---------TOE1(3)<-------TEIL<---------AHL20(2)                 --------->ARR14(2)---------->DOF2  -   tgtaaggttatcttataagatacactcggaatattattagtaagatttttgtttccatagtctatcggatccttctaggtcaattaaaagttaaaaccct  21742400  Previous    Next  AGI:  At5g53490.1    Description:  thylakoid lumenal 17.4 kDa protein, chloroplast. Identical to Thylakoid lumenal 17.4 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:P81760;GB:Q93Y82); similar to thylakoid lumenal protein-related [Arabidopsis thaliana] (TAIR:AT1G12250.1); similar to thylakoid lumenal protein-related [Arabidopsis thaliana] (TAIR:AT1G12250.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48624.1); contains InterPro domain Pentapeptide repeat (InterPro:IPR001646) Range:  from: 21740533    to: 21741868    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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