Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------TGA1a                  --------->YAB1                   --------->O2                    <---------AHL20(2)                   --------->TGA1a                <---------ATHB12                   --------->ANAC58               --------->AHL20(2)                   --------->ANAC58           ------->GAMYB                   ================================MYC_MYB         <---------AHL20(2)                   <---------O2   --------->TOE2(3)--------->AHL20(2)                   ==================================MYC_MYB       --------->AHL20(2)                   ================================MYC_MYB       <---------YAB1                   --------->ANAC46         -------->P          --------->AHL20(1) ------>AHL20(2)  <---------TOE1(2)        ------->GAMYB       --------->AHL20(2)            <------- ------>YAB1xxxxxxxxxxxxxxxx>smallRNA(s)  --------->MYB46(3)   <---------AHL20(2)         <---------- --->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(s)  <-----------GT1        --------->ATHB51       <---------AHL20(2) ---YAB1xxxxxxxxxxxxxxxx>smallRNA(s)    --------->YAB1 --------->MYB52(1)         --------->ANAC55(2)   taatatttgtagttgaatcgcacgtctccattcgaaacttaataacaacccaattaataacagaattattttaatacttagtttacatattatttctttt  21717300                                          ---------->DOF2                                   <---------AHL20(2)  --------->RVE1(1)                                  --------->AHL20(2)  --------->ARR11(3)                           --------->AHL20(2)         --------->GLK1(2)                          --------->AHL20(2)    <----------ID1                  --------->AHL20(2)   --------->AHL20(2)              --------->DAG2               -    <-----------GT1   --------->AHL20(2)<---------AHL20(2)    <---------CCA1(2)                    -- ---DOF2         --------->AHL20(2)--------->AHL20(2) <---------ARR11(3)                <-----------GT1 -GT1           ------------------------>ANAC81 ----------->GT1       ---------->DOF2 <-----------GT1   ttaaaattactgattcaaaataaaaaaaataaaaaaaaaaatttaaaagaaggaaaaatctctcttatctaaaaaagcgaaacaaaattttctctctctt  21717400                                                                                                    -                                                                                                   --                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                             ------>NtERF2                                                                                            ---------                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                          <---------ATERF1(1)                                                                                          <---------RAP2.6(3)                                                                                          ------>NtERF2                                                                                         >>>>>>>>>AtERF-5                                                                                         --------->ANAC46                                                                                         >>>>>>>>>AtERF-3                                                                                         >>>>>>>>>AtERF-4                                                                                         >>>>>>>>>AtERF-1                                                                                         >>>>>>>>>AtERF-2                                                                                         --------->RAP2.3(3)                                                                                         --------->RAP2.6(2)                                                                                         <---------ATERF1(2)                                                                                         --------->DEAR3(1)                                                                                         --------->ATERF1(2)                                                     --------->LBD16                     --------->RAP2.3(2)           ------>MYB83                              ------>ZmHOX2a(1)                  --------->MYB46(3)           ------>MYB46(1)               --------->ANAC46                               --------->ERF1         <---------MYB59       --------->AHL20(2)  ----------->RAV1(2)                  --------->RAP2.3(1) -------->DAG2             ------>ZmHOX2a(1)      ------>NtERF2             <---------ALFIN1<-------- -------->DOF2    <---------CCA1(2)    <-----------GT1        ----------->GT1          <---------ATERF1(1)   ataaagctggaccaaactccatctctctcctctataaatataaacgtctcgcctcctgagaaaaacgtataaactctcacactctccctagccgccacct  21717500         <---------ALFIN1        <------NtERF2        --------->ATERF1(1)        --------->RAP2.3(1)       ------>NtERF2       <---------ATERF1(1)      --------->DREB2C(2)      --------->RRTF1(2)      <---------ALFIN1      <---------ATERF1(2)      --------->DEAR3(1)      --------->RRTF1(3)      --------->RAP2.3(3)      --------->ATERF1(2)      --------->RAP2.6(2)      --------->RAP2.3(2)     --------->ORA47(2)     --------->ERF1     --------->RAP2.3(1)     --------->DEAR4(2)     --------->RRTF1(1)     --------->RAP2.6(1)     --------->ATERF1(1)    --------->LBD16    <---------At4g35610    <---------ATERF1(1)    ------>NtERF2    --------->ABI4(1)    --------->At4g35610             --------->ATERF1(1)   --------->DEAR3(1) ----------->RAV1(2)   <---------ALFIN1   --------->ATERF1(1)   --------->ANAC46   <------NtERF2 <---------DEAR3(1)  --------->SPL7     ------>NtERF2 --------->LBD16 <---------ATERF1(1) --------->ABI4(1) -------->ANAC46     <---------ATERF1(1) ------->MYB46(3)   --------->RAP2.3(3) -->MYB46(1)        <---------ATERF1(2) -->MYB83--------->DEAR3(1)        ------>NtERF2 ---->P--------->ABI4(1) --------->ZAT2          <---------DAG2 ---->MYB55(1)      --------->RAP2.3(2)          <----------DOF2 --->DEAR3(1)       --------->DEAR3(1)       <------NtERF2 -------AtMYB84     --------->ATERF1(2)     --------->DEAR3(1) ----MYB111(1)     --------->ATERF1(1)   --------->ANAC46 ----MYB59         --------->ERF1  <---------ATERF1(1) --->MYB46(3)      --------->ORA47(2)    --------->ANAC58 -------AtMYB15    --------->RAP2.3(1)<------NtERF2 ----MYB55(2)      --------->DEAR4(2) ------>NtERF2                                            ------ --->AtMYB61 <----------DOF2      <---------ALFIN1                                        <---------MYB52(1) ----MYB111(2)    <---------RAP2.3(1)--------->DEAR3(1)                          --------->GLK1(2) ----MYB46(2)<---------DAG2       --------->DEAR3(1)                            <---------GLK1(2)  <- >DEAR3(1)------>NtERF2  <---------ZAT2  --------->ANAC58                   --------->LBD16   ======= -ALFIN1--------->DEAR4(2)        --------->ANAC46       <----------DOF2  <---------HSFB2a(2) <------ZmHOX2a(1)   accctccgccgcctccttttcgccgcctgcttcgctccgccgcgcgcagcgcttttagtctttttctgagactgtttccgaagaatctctctgttaggat  21717600                                               <-----------GT1                                       <---------ARR11(3)                                    --------->LBD16                                   <---------ANAC58                        ==========================HOX2a_HOX2a                        <------ZmHOX2a(2)  <----------DOF2                       --------->ARR14(2)------>ZmHOX2a(2)               --------->DOF5.7(2) --------->ANAC55(2)               <---------MYB52(1)  <---------ANAC58                        <------ZmHOX2a(1)            ---------->ID1         <---------ANAC55(2)                    ----------->GT1     <------ --->ARR11(3) <-------GAMYB    --------->GLK1(1)                          <----------ID1   <---------ARR14(2) --------YAB1<---------MYB46(3)<---------GLK1(1)          <----------DOF2----------->GT1   --------->ARR14(2) ==============================HOX2a_HOX2a ------>ZmHOX2a(1)      <-----------------AGL1   --------->GLK1(2)   tttgtttgattctggtcgttatccagatcagagaaatccgtgatccttttttctctctcactttcttctctgaaataggaaaaacaaaaaacaaatctga  21717700                                                 <------NtERF2                          --------->MYB46(3)                                                 <---------At4g35610                    <---------MYB55(2)                                                 --------->HSFB2a(1)                   ------>MYB46(1)                                                 <---------HSFB2a(1)                   ------>MYB83                                                 --------->At4g35610                 --------->AtMYB61                                              --------->ATERF1(1)                    ------->GAMYB                                             <---------DEAR3(2)                     <---------ATHB12                                            --------->ETT(1)                        <---------MYB52(2)                                            <---------RAP2.6(2)                     --------->MYB46(3)                                 <---------MYB59 <---------HSFC1(2)                 <---------MYB55(2)                                 --------->TOE1(3)                                 ------>MYB46(1)                                 --------->TOE2(3)<---------GLK1(2)                --------->ANAC58                              --------->ARR14(2) --------->HSFC1(2)                --------->ANAC58                             <---------MYB52(1)  <---------ZAT2                    ------>MYB83                            --------->LBD16 <<<<<<<<<<AtTINY2                    <---------MYB111(1)                           --------->ANAC55(2)<------NtERF2<---------ZAT2        --------->AtMYB61                           <---------ANAC55(2)<---------At4g35610               --------->DEAR3(2)                           <---------ANAC58 --------->ETT(2)                    --------->MYB46(3)                           <---------ANAC58 <---------At1g77200                 <---------MYB55(2)                   --------->At4g35610     --------->DDF1  --------->ZAT2--------->DEAR3(1)       --- ---YAB1           <---------At4g35610     --------->RAP2.6(3)   <---------MYB52(1)-------->P    <---   taatcgaaactgatcactcactgctgattccgtaacctaaaaaatgtcggcagcttcttctagctccgttcttcacctccgaaccaaccaacaactgtta  21717800                                                                                    <------NtERF2                                                                                   ------>NtERF2                                                                               <---------DEAR3(1)                                                                              --------->SPL7                                                        <---------ZAT6      <---------SPL7                                                     <---------MYB46(3)     <---------ZAT14                                                 <---------ANAC58         <---------------AtSPL3                                                 <---------ANAC58        <------------------SPL14                                                 <---------ANAC55(1)     ------>ZmHOX2a(2)                               <---------ANAC58  <---------ANAC46       <------ZmHOX2a(2)                               <---------ANAC58  --------->ANAC55(2)   --------->ARR11(3)                            <---------MYB52(1)   <---------ANAC55(2)   --------->ARR14(2)                       --------->AtMYB61      <---------MYB52(1)       <---------ARR14(2)       ------>ZmHOX2a(2)   <-------GAMYB     <-----------HVH21         <---------ARR11(3)      <------ZmHOX2a(2)<---------ALFIN1      <-------GAMYB             <---------ARR14(3) ------>ZAT6           --------->DEAR3(1)    <---------RAP2.6(3)       --------->ARR14(3) ------YAB1         <---------ALFIN1        <---------MYB46(3)  --------->LBD16--------->ANAC46------   tcactccgatctctcaaaaattccacctccgttgcttctcaattggccgttacgtctggtgttagccgtagaagatcgtgtacggcgcgatgctctgtga  21717900                                                      ------>ZmHOX2a(2)                                                    <---------ARR14(2)                                                ------>ZmHOX2a(2)                                                <---------LBD16                                               --------->ARR14(1)                                              <---------ARR14(3)                                              --------->ARR14(3)                                              --------->ARR11(3)                                              --------->ARR11(1)                                              --------->AGP1                                              <---------ARR14(2)                                              <---------ARR11(3)                                              --------->ARR14(2)                                             --------->GLK1(1)                                          --------->LBD16                                        <---------LBD16                                        --------->ZAT18                                        <---------ZAT14                                        <---------At4g35610                                   --------->TGA1a  --------->ARR14(2)                                   <---------O2--------->CCA1(2)                                   <---------TGA1a--------->LBD16                           ------>ZmHOX2a(1)----------->ARR10                 <-----------RAV1(2)                           ==================================HOX2a_HOX2a     ==================HOX2a_HOX2a                           =================================HOX2a_HOX2a    <---------GLK1(1)                      <----------DOF2   --------->At4g35610 --------->ANAC58 <------ZmHOX2a(2)                      ================================HOX2a_HOX2a       --------->LBD16                      =================================HOX2a_HOX2a     --------->HSFB2a(2)        <--             ------>ZmHOX2a(1)     --------->O2<------ZmHOX2a(2)       <---------HSFB2a(2) --------->SPL7       <---------MYB46(3)  ============================HOX2a_HOX2a  --------->ARR14(2)  ------>ZmHOX2a(1)     <---------MYB52(1)    ===========================HOX2a_HOX2a   <---------ARR14(2)  --------->HSFB2a(2)    ----------->GT1   =======================bZIP_DOF<------ZmHOX2a(2)<---------LBD16   <---------HSFB2a(2) --------->MYB52(1)   ------>ZmHOX2a(1)--------->ALFIN1     --------->ANAC58<---------ARR11(3)  <---- --->REM1(2) --------->LBD16<---------TOE1(2)<---------GLK1(1) <-----------HVH21       xxxxxxxxxxxxxx   agaaaccggtgattcctgagagtcctttcctagggactcgtgtgcggagatccggatccgagacgcttcagttctggagatcagatggtcctggacggtc  21718000                <-------GAMYB               --------->MYB55(2)               <---------MYB46(3)               ----------->GT1          --------->SPL7                        --------->HSFC1(2)        <---------SPL7                    --------->LBD16   <---------HSFB2a(1)                   --------->HSFB2a(2)                --------->YAB1   --------->HSFC1(2)                    <---------HSFB2a(2)             ------>ZmHOX2a(1)   --------->HSFB2a(1)                   <---------ANAC46            ------>ZmHOX2a(1)           <---   <---------ZAT2                   <----------DOF2                ------>ZmHOX2a(2)             <---   --------->ZAT2                 <---------At4g35610            --------->ARR11(3)              <---   <---------HSFC1(2)             --------->At4g35610            <---------ARR11(3)             <----  ----------->ARR10    --------->YAB1 <---------ARR14(2)       <---------YAB1  ---------->DOF2 <----- -------------------WRI1<-----------TGA1<---------LBD16     --------->ICU4 <---------YAB1 <---------AtMYB61 -----DEAR3(1)--------->ALFIN1    --------->LBD16          <----------DOF2<---------TOE1(2)  <------- xxxxxxxxxxx>smallRNA(se3)      <---------LBD16 <---------HSFC1(2) =============HOX2a_HOX2a  --------   tgcgaagcttcgaacggtggttaaatcgtcattttccgctgttccggagaagcctcttggtctttatgatccttcctatgataaagactcttgtggtgtt  21718100                              --------->ANAC58                              --------->ANAC58                             <---------LBD16                             --------->MYB46(3)                            ------>MYB46(1)      <---------At4g35610   ------>MYB83                               <---------ICU4 ---MYB83                 --------->AtMYB61                            --------->ATHB12 ---MYB46(1)      --------->LBD16                                     --------->ICU4            ----- ------MYB46(3)  <---------DEAR3(1)                              <---------bZIP60(1)       <---------WOX13(1) -----AtMYB61   <---------LBD16    --------->MYB52(1)            --------->bZIP60(1)     --------->ATHB12 ---P --------->At4g35610 <---------ALFIN1                  --------->ANAC55(2)         <---------YAB1 --ANAC46       --------->SPL7--------->ANAC46     ------->TEIL  <---------ANAC46  <---------YAB1  -- ->ALFIN1     <-----------HVH21--------->LBD16    <---------CCA1(2)   <---------YAB1--------->ATHB12   ggttttgtagcagagttgtccggcgagaccacccgcaaaacggtactgttttgaatcttctcatgtgatgtgatcattgacatatatgatttgattgatc  21718200  Previous    Next  AGI:  At5g53460.1    Description:  GLT1 (NADH-dependent glutamate synthase 1 gene). similar to GLS1/GLU1/GLUS (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT5G04140.2); similar to GLU2 (Glutamate synthase) [Arabidopsis thaliana] (TAIR:AT2G41220.1); similar to GLS1/GLU1/GLUS (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1), glutamate synthase (ferredoxin) [Arabidopsis thaliana] (TAIR:AT5G04140.1); similar to Glutamate synthase [NADH], chloroplast precursor (NADH-GOGAT) (GB:Q03460); similar to NADH glutamate synthase precursor [Phaseolus vulgaris] (GB:AAL26864.2); similar to NADH-dependent glutamate synthase [Medicago sativa] (GB:AAB41904.1); contains Inte Range:  from: 21717744    to: 21727292    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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