Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <-----------RAV1(1)                                         <----------DOF2                                        <---------ANAC58            <---------ARR14(2)          <----                                   <---------ANAC46    <----------ID1 ------>ZmHOX2a(2) --------->ALFIN1                                   <---------ANAC58    --------->ANAC58             <---------ZAT14                                   <---------ANAC58    --------->ANAC58             --------->ZAT14        --------->MYB52(2)--------->At4g35610 <---------ICU4        --------->ARR14(2)<---------ANAC46 ----->GAMYB       --------->TOE2(3)    <---------ANAC58   ---------->DOF2      --------->GLK1(2)   - --->MYB46(3)--------->YAB1        <---------AtLEC2  <---------At4g35610   ----------->GT1   <------NtERF2   actgtctggtttgtttgataacctcattatctgaattgcttggcttaattgttgcagacgacaaaggagggatcggatggagaaactgaagtggaggcag  21664700                                                   --------->YAB1                                                --------->YAB1                                                <---------ICU4                                       <---------ICU4                                       --------->YAB1                                    --------->AtMYB61--------->At4g35610                                 <---------ALFIN1  <---------ICU4                                 <--                                --------->MYB46(3)<---------YAB1                              <------                           <---------ICU4      <---------YAB1                       <---------ANAC58                           -------->HAHB4    --------->YAB1                         --------->ANAC46                          --------->ICU4     <---------ICU4                 <----------DOF2  <-------                     <---------ANAC55(2)    <---------YAB1               ------->TEIL     <---------ICU4       <-----------RAV1(1)<---------YAB1  <---------ICU4                <---------CCA1(2)--------->ICU4 --NtERF2 <---------REM1(1)--------->YAB1 --------->YAB1        <---------ANAC46    <---------ANAC58- -------->GLK1(2)    --------->ANAC55(2) <---------YAB1        --------->ALFIN1     --------->ANAC55(2)   agattccatctgttgtagcaagtatgtaatgatcaccaccatcatcatcatcatcatcagaaaatgtggtgaatgtatctttgtatgcgtaatatttacc  21664800                                                                                        <------------MYB.PH3(2)                                                                                        <---------MYB52(2)                                                                                        --------->MYB46(3)                                                                                   <---------REM1(1)                                                                                   --------->TGA2(1)                                                                                   --------->bZIP60(1)  --------------->AtSPL8                                                           <---------bZIP60(1) <----------DOF2             ---------->DOF2                                       ----------->GT1 -------MYB52(1)     ----------->GT1                                            <---------YAB1 ---At5g28300   <---------TOE2(3)                                             --------->YAB1     <--- ----GT1    ------------------------>ANAC81                                  --------->ICU4  <------- -------->MYB52(2) ---------->DOF2                                     --------->YAB1 <-----------GT1   gttctttgtacataaatgaaggaaagaaaaacaaagttggataagaaaacacaaggatgcacaacttgcacattgataaatgatgatgtaacaaactttt  21664900                              ------->TEIL                             <---------CCA1(2)                          <---------TOE2(3)                                             <------ZmHOX2a(1)    --------->ANAC58   <---------WOX13(1)                                              ----------->GT1    --------->ANAC58 --------->ATHB12                  --------->ANAC58         --------->YAB1 --------GT1        <---------YAB1        ---------->DOF2                       --------->TOE2(3) --- ---DOF2         <----------DOF2    <---------YAB1     --------->ANAC58        <-----------------AG   tatcgtatgcaatgtccatcttttcattgatgtatcttataattcaaagtattcaacaagaaaacgctcttgtaacaaataatcttattaggaaaattca  21665000              --------->GLK1(2)             --------->ARR14(2)             <---------GLK1(2)             <---------ARR14(2)            <---------At4g35610        <-----------HVH21      ------->MYC3       <-----------HVH21      <-------MYC3      ------->GAMYB     <---------O2      --------->MYB46(3)     ===========================MYC_MYB        --------->DAG2     --------->TGA1a   <------------AtMYB77   ---------->DOF2     =============================================MYC_MYB     <---------TGA1a  <---------At5g28300 --------->MYB46(3)                   --------->TOE2(3)     ===========================MYC_MYB  -------->P                      <---------AHL20(1)     ===============================MYC_MYB------->GAMYB                 --------->AHL20(2)     --------->O2    --------->MYB52(1)  ------>MYB46(1)                 <---------AHL20(2)   ------- --------->ANAC58    <-----------GT1     ------>MYB83                <---------YAB1           <------ --------->ANAC58 --------->YAB1 --------->AHL20(2)              ----------->GT1------>ZmHOX2a(1)   - ------>MYB46(3) <---------YAB1  <---------AHL20(2)<----------DOF2   --------->ICU4          <-------   aacacccatgtgtcagattctaataaccgtcggattaaaatccaaccaaaaagctttaaatctggacgggtataattaattcctcaaacttcttctctgg  21665100                                                                                                   <-                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            ---------       ---------->DOF2      *TSS                                                     --------->HSFB2a(1) -->HSFB2a(2)           --------->MYB52(1)                                           <---------HSFB2a(1) ---HSFB2a(2)       ------------------------>ANAC81                               ----------->GT1  <- ----------------------->ANAC81 ---------->DOF2                                  ----------->GT1  <-- --LBD16          ---------->DOF2                                          ---------->DOF2  <--------   aagaacaaaaaaagatgaaacaaagccaacgaagaaaagcacaattttggcgaaacccagtgagagagagacagagagaaaggagggaaattccagcttc  21665200                                                          ------>NtERF2                                                          ----------->RAV1(1)                                                         --------->ANAC46                                                         --------->LBD16 --------DAG2                          ---------->DOF2   ----------->HVH21 --GLK1(2)                     --------->LBD16           <---------ETT(1) -At4g35610                   <---------ANAC46          --------->HSFB2a(2) >At4g35610                ------>ZmHOX2a(2)            <---------------AGL15 >ZAT2                    <---------At4g35610           <---------HSFB2a(2)                 <-------- ---------DOF2      <----------DOF2---------->DOF2   <-----------GT1                        <-------- -------DAG2 <---------ANAC58 <---------ANAC58   <---------AHL20(2)                      <------ZmHOX2a(1) -ZAT2       <---------ANAC58 <---------ANAC58  <---------YAB1    ---------->DOF2      --------->MYB59   ccttttctctctcgttcttgctcttttgatctgcgtgaaaagaaagaatttttattttcccgacagagaaaagtcccaatttttaaaattaggacttttt  21665300                                                    ----------->HVH21                                                    ----------->TGA1                                                 ------>ZmHOX2a(2)                                             ----------->HVH21                                            --------->LBD16      --------->WOX13(1)                                           <---------ANAC55(2)  <-------TEIL                      <--                                           --------->ANAC55(2) <------ZmHOX2a(2)                  <--                                           <---------ANAC55(1)<---------ARR11(3)           ------->GAMYB                                           <---------ANAC58   --------->AGP1             -------->P -DAG2                                     <---------ANAC46   --------->ARR11(3)        --------->WOX13(1) --DOF2        <---------ZAT6              <---------ANAC58  --------->GLK1(1)         --------->MYB46(3)   gattttcgaaaattttggtgttaatggaaacagatagtatcgattccgtgatcgatgacgatgagatccatcaaaaacaccaattctcatcaaccaagtc  21665400                                                                                           --------->WOX13(1)            --------->DEAR3(1)                                                           <---------ATHB12           <------NtERF2                                                                ------>MYB46(1)          ------>NtERF2                                                                 ------>MYB83         <---------ALFIN1                                                              --------->WOX13(1)         --------->DEAR3(1)                                                           --------->AtMYB61        --------->ATERF1(1)                                                           --------->MYB46(3)        --------->MYB46(3)                                                            <---------ALFIN1        <---------ABI4(2)                                                           ------>MYB46(1)       <---------ATERF1(1)                                                         --------->ANAC46     <------ZmHOX2a(1)                 --------->ARR14(2)        --------->At4g35610------>MYB83     --------->ATERF1(1)               <---------ARR14(2)        <---------ZAT14  --------->MYB46(3)<    <---------ATERF1(1)    ------>NtERF2                         --------->ZAT18  <---------MYB55(2)<   --------->ALFIN1        --------->LBD16                <---------ANAC58        <---------MYB111(1) -------LBD16--------->LBD16          --------->DOF5.7(2) <---------ANAC58      ------->TEIL  <------ ---------RAV1(2)        <---------LBD16                --------->ZAT18     --------------->AtSPL8 <-   tcagggaggagccaccgtggtaatctctccggctacaagcgtttacgagctccttgaatgccctgtctgcaccaattcaatgtacccaccaatccatcag  21665500                                                <---------ANAC58                                                <---------ANAC58                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)          <---------ICU4               --------->ARR14(2)   <---------ARR14(2)                  <---------ARR11(3)   ------->TEIL                        <---------AGP1   <---------ARR11(1)                  <---------ARR14(2)   --------->ARR14(2)                  --------->ARR14(3)                             <---------ARR11(3)   <-----------ARR10                   <---------ARR14(3)                           <---------MYB52(1)  <---------ARR14(1)                   --------->ARR11(3)                           --------->DOF5.7(2)  <---------CCA1(2)          <-------GAMYB<---------YAB1                           <-------GAMYB ---------ANAC58  <<<<<<<<<<<<<<<<<LFY <-----------ARR10                          ------>ZmHOX2a(2)-- ---------ANAC58 ==============================HOX2a_HOX2a                <---------AHL20(2)     <--- -----RAV1(2)    ------>ZmHOX2a(1) ---------->DOF2             --------->DAG2  --------->YAB1    ---- ------TEIL      ===============================HOX2a_HOX2a   ---------->DOF2 <---------YAB1   <-----   gttcgtatctcatcatctcctaacattggagggttgagaaagatcttattgcttcttacgaatataaagttccaatttttatgatcgttatcttcaaatg  21665600  Previous    Next  AGI:  At5g53350.1    Description:  CLPX (Clp protease regulatory subunit X); ATPase. similar to ATP-dependent Clp protease ATP-binding subunit ClpX, putative [Arabidopsis thaliana] (TAIR:AT1G33360.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75136.1); contains InterPro domain ATPase AAA-2 (InterPro:IPR013093); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain ClpX, ATPase regulatory subunit; (InterPro:IPR004487) Range:  from: 21661124    to: 21664933    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g53360.1    Description:  seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINAT5 (SINAT5) [Arabidopsis Thaliana] (GB:Q8S3N1;GB:Q8GYS3;GB:Q9FK06); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT4G27880.1); similar to SINA1 [Medicago truncatula] (GB:ABW70159.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain TRAF-type (InterPro:IPR013322) Range:  from: 21665128    to: 21666793    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version