Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ANAC46                                                                           --------->YAB1                                                                        --------->WOX13(1)             ----------->RAV1(1)                                       ------>ZmHOX2a(2)          ------>MYB46(1)                                             <------ZmHOX2a(2)          ------>MYB83                                               <---------ARR11(3)        <---------MYB59                                              <---------ARR11(1)        <---------MYB46(2)                                           <---------AGP1        --------->MYB46(3)                                           --------->AGP1<---------ZAT2        <---------MYB111(1)                                          <---------ARR14(2)  --------------->AtSPL3                                            <---------ARR14(1)<-----------RAV1(2)  --------------->AtSPL8                              --------->ZAT18--------->ARR14(2) --------->LBD16  ------>ZmHOX2a(2)          --------->GLK1(1) --------->YAB1       <---------CCA1(2) <---------LBD16 <------ZmHOX2a(2)       --------->ANAC58    --------->AtLEC2      --------->LBD16 --------->At4g35610 -------->ARR14(2)       --------->ANAC46    --------->ANAC58    <---------LBD16   <---------At4g35610 ---------ARR14(2)       --------->ANAC58    --------->ANAC58   --------->MYB52(1) --------->ZAT2   gagatcggtaccaaacaacacataaacacacaaatccaaacaaatccaagcataagcgaacaaaaaaaccggatctatcaacaccagctcagggaaacaa  21651100                                                                                ------>ZmHOX2a(1)                                                                                =====================                                                                            <---------ARR14(2)                                                                            <---------ARR11(3)                                                                            --------->ARR14(2)                                                                            --------->ARR11(3)                                                                            <---------ARR14(3)                                                                       <---------HSFB2a(2)                                                                    =================HOX2a_HOX2a                                                                    =================================                                                                    ================HOX2a_HOX2a                                                                    =================================                                                                  <---------HSFB2a(1)                                                                  --------->HSFC1(2)                                                                  =====================HOX2a_HOX2a                                                                  --------->HSFB2a(1)                                                                  <---------HSFC1(2)             ----                                                                  ------>ZmHOX2a(2)             <----                                             --------->ANAC46    <------ZmHOX2a(2)              -----                                          --------->TOE2(2)      ======================HOX2a_HOX2a --                                          --------->TOE1(2)     <---------ARR14(2)              -----                                         ----------->RAV1(2)    --------->ARR14(2)             ------                                        ------->TEIL          <---------MYB46(3)=====================                                     --------->ANAC58        --------->ALFIN1 ------>ZmHOX2a(2)------                              --------->ANAC58             <------MYB83--------->HSFB2a(2)     <-----                              --------->ANAC55(2)          <------MYB46(1) <---------GLK1(1)   ------                              <---------ANAC55(2)         --------->MYB111(2)<------ZmHOX2a(2) <-----                              --------->ANAC46            <---------AtMYB61--------->GLK1(1)   <-----                              --------->ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ------               --------->TOE2(3)     --------->ANAC58  <---------REM1(1)--------->LBD16        ------            <---------GLK1(1) --------->ANAC55(1) --------->REM1(1) ------>ZmHOX2a(1)          <-----   aactttttaagatgaaatctcaaaatccaaacacgaaacaagtacctgcgctacatgatgtaggtggatccttctggagatccttcaattccttcaagat  21651200            --------->ARR14(2)       ------>NtERF2      --------->ANAC46      --------->ANAC58      --------->ANAC58 <----------DOF2 ==HOX2a_HOX2a ==HOX2a_HOX2a ===HOX2a_HOX2a -->ZmHOX2a(2) --ZmHOX2a(2) ---->ARR14(1) ------->At4g35610 ---->CCA1(2) --->ARR11(3) ===HOX2a_HOX2a --->AGP1  <---------CCA1(2)                                                 --------->LBD16 ----ARR11(3)                                                               <---------ANAC58 --->ARR14(2)                                                               <---------ANAC58 ----ARR14(2)                                                               <---------ANAC55(2) ----ARR14(3)                                                               --------->ANAC55(2)   <-- --->ARR14(3)         --------->TOE1(3)                          --------->ANAC58                ---- --->ARR11(1)         --------->TOE2(3)        --------->GLK1(2) --------->GLK1(2)       --------->ANAC46 ----GLK1(2)<---------ARR14(2)                <---------GLK1(2)  --------->ANAC58        --------->ANAC55(2)   ccgcttcgacgccatatccaaaaacctaaaaatcaaaaatcaaacaaagattctaaacgaatcagagaagctataaatccgtgagaaatataagtaatag  21651300                                                <---------ANAC58                                                <---------ANAC46                                            <---------WOX13(1)                                           --------->ARR14(2)                                           <---------ARR14(2)                                  --------->ANAC55(2)    --------->ANAC58              --------->ANAC46    --------->ANAC58              <---------ANAC55(2)        <---------DAG2  ---------->DOF2               <---------ANAC46<---------ANAC58      --------->HSFB2a(2) ----ZmHOX2a(2)       <----------DOF2<---------ARR14(2)      <----------DOF2 ----->AGP1        <---------ARR11(3)--------->ARR14(2)     <---------DAG2            >>>>>>>>>TBF1   atccaaaagctacagagacaatacctttgatttttcgcgtaatcggattggcgaggttttcgcctttttcttctcgtattagagagaagaagaaccaaga  21651400                                                                              ----------->TBP                                                                          ------------>CBF                                                                     ================================                                                                     ================================                                                                     --------->O2                 <--                                   ============================================bZIP_DOF --------->REM1(2)                                   ---------->DOF2                   <---------O2      --------->ALFIN1                                 --------->ANAC58                    <---------TGA1a <---------ANAC58                                 --------->ANAC58               <---------At4g35610  <---------ANAC46                           <---------MYB46(3)                   <---------ZAT18      <---------ANAC58                          <---------AtMYB61                     --------->ZAT14<---------ICU4 -------                       --------->ALFIN1                         --------->At4g35610<---------At5g28300           ----------->GT1--------->ALFIN1             *TSS   --------->ZAT14 --------->AHL20(2)  <--     ---------->DOF2   <---------AtMYB61              -------->ATHB1 --------->TGA1a <---------ANAC55(1)   cttaggggaaaggaagaaaatagagatggtggtggacgaaagacgaagaatacgaattattctctgtgctcacgtctacaataaataccgtgtggattat  21651500                                                                   --------->ABI4(2)                                                                   ------>NtERF2                                                                  <---------DEAR3(1)                                                                 ------>NtERF2                                                                 --------->RAP2.3(1)                                                                 --------->DEAR4(2)               --------->ZAT18                                   <------NtERF2               <---------ZAT14                                  <---------DEAR4(2)       --------->WRKY45                                         <---------ATERF1(1)     <----------DOF2                                      ----------->HVH21 <----------DOF2                                 ------->TEIL<---------bZIP60(2) ===========bZIP_DOF                           <---------ETT(2)--------->ALFIN1 ===========bZIP_DOF        <-----------GT1    --------->WRKY12<---------DEAR3(1) -------AHL20(2)        <----------DOF2       --------->ALFIN1------>NtERF2  --------->AHL20(2)     - -->AHL20(2)   --------->ZAT14        <---------YAB1     --------->DEAR3(2)  <---------AHL20(2)     - ---------GT1  <---------ZAT18 ------->GAMYB<---------ANAC46 <---------O2    --------->YAB1 <--------   ttactttctttgactagtggactctacttttaaccctcttattattcggtggaccttgaaacgacgcggcgcttcttaattaaaacatcaagttgcattg  21651600                                                                                         --------->YAB1                                                                                        <---------YAB1                                                  ---------->DOF2               <---------ANAC46                                                ------>ZmHOX2a(1)              <------NtERF2                                               --------->TOE2(3)             <---------DEAR3(1)               --------->DAG2         <---------GLK1(1)                     --------->At4g35610 -------->ANAC58                      --------->GLK1(1)                   --------->MYB46(3)--------- -------->ANAC58     <---------At4g35610   ------>ZmHOX2a(1)             --------->RAP2.6(3)<-------- -AtLEC2      ---------->DOF2--------->MYB52(1)--------->TOE1(3)        --------->MYB52(1) <---------YAB1   aaacgacatcgtcttaaaaagtcatctaatctaacggttgatatcctatccttaaatcaagtggtattgaaatctaacggctgcgagtttattataaatt  21651700                                                                                           --------->ANAC58                                                                                           --------->bZIP60(2)                                                                                           <---------TGA1a                                                                                           --------->ANAC58                                                                                           --------->TGA1a                                                                                           <---------O2                                                                                           ==========                                                               ======================================bZIP_DOF                                                --------->At4g35610                        --------->O2                                              --------->MYB46(3)                      --------->ANAC58                                             --------->RAP2.6(3)                      --------->ANAC58     <---------O2                     <---------AHL20(2)    ------->TEIL              --------->ANAC46  <---------ATHB12             <---------bZIP60(1)         <---------CCA1(2)   --------->ATHB12 >AHL20(2)                     --------->bZIP60(1)  ----------->ARR10          <--------HAHB4 -AHL20(2)  <------NtERF2<---------ANAC46   --------->MYB52(1) <----------DOF2<---------ATHB12   tcaaatcaagtggcatcgaaacgcgttgcgatgaagtcatataatctaacggctgagatttgtatcttttaatcgatcgaatcatttgaagccacgtctt  21651800                                                                               <---------KAN4(2)                                                                             <------ZmHOX2a(1)                                                                         <------NtERF2                                                                        --------->LBD16                                                                        ------>NtERF2                                                                       <---------LBD16                                            --------->MYB52(1)        --------->ATERF1(1)                             --------->GLK1(2)                        <---------LBD16                             --------->ARR14(2)   --------->ARR14(2)  <------NtERF2                             <---------ARR14(2)   <---------ARR14(2) ------>NtERF2             --------->ARR11(3)          --------->At4g35610         <---------RAP2.3(1)       *TSS  <---------ARR11(3)      <---------KAN4(2)              --------->DEAR3(1)              -      <----------DOF2       <---------ARR14(2)    --------->GLK1(2) <---------DEAR3(1)        <------ZmHOX2a(1) ================bZIP_DOF   <---------GLK1(2)    <---------GLK1(2)<-----------HVH21------->TEIL    --   ctctctcactttggagatttttctaacgcagaatctgagaataagctaaccgattccgatttcgagttcgtcgccgggaggaatgaaccggttgaaggag  21651900                                                                                        --------->bZIP60(2)                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                   <------ZmHOX2a(2)                                                                    <---------ANAC46    --------->ANAC46                                                                   <---------AtMYB61  <---------ALFIN1        <------NtERF2                                         <---------MYB46(3)  <---------ARR11(3)      <------NtERF2                                  =================================HOX2a_HOX2a      --------->ATERF1(1)                   <---------YAB1   --------->ALFIN1     --------->ARR11(3)     ------>NtERF2                  <---------At4g35610    <-----------RAV1(1)   --------->GLK1(1)    <----------ID1            --------->At4g35610    <------ZmHOX2a(2)           <---------GLK1(1) --------->DAG2    <------NtERF2  <---------ALFIN1  <---------ARR11(3)         <------ZmHOX2a(1) -------->DAG2    ------>NtERF2--------->AtMYB61    --------->ARR11(3) --------->ETT(2) --------->ANAC55(1) -------->DOF2   <---------DEAR3(1) ----------->RAV1(2)    --------->ALFIN1----------------------->TaNAC69(2)   caaaaggggccgaagttcgacggcgaagaatcacctccacctgattttgatgaagatcgaagtgtgggtgaggtagacggaggagatcacacgccattcg  21652000  Previous    Next  AGI:  At5g53300.1    Description:  UBC10 (UBIQUITIN-CONJUGATING ENZYME 10); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2-17 kDa 10/12 (UBC10) [Arabidopsis Thaliana] (GB:P35133;GB:P56617;GB:Q8LCR4); similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.1); similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.2); similar to ubiquitin-conjugating enzyme 8 [Capsicum annuum] (GB:AAR83891.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (In Range:  from: 21649740    to: 21651455    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g53310.1    Description:  myosin heavy chain-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO69356.1); contains InterPro domain Myosin tail 2; (InterPro:IPR010926) Range:  from: 21651807    to: 21653581    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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