Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                      ----------->GT1                                     <---------ANAC58                               <---------ANAC58                                     <---------ANAC46                        --------->AHL20(2)                                     <---------ANAC58                        <---------AHL20(1)                                <---------ICU4                               --------->AHL20(1)                               <---------YAB1                                <---------AHL20(2)<-----                             --------->YAB1                                 <---------AHL20(2)<------          ------>ZmHOX2a(2) <---------YAB1                                  --------->AHL20(2)------- ---ARR11(3)            <---------GLK1(2)                         <---------YAB1    <---------ANAC58 -->ARR11(3)           <---------At4g35610                      <---------ICU4      <---------ANAC46   ttgttgaaatgatccccaaggttacagcttctgataattccttgaatgttatccaaacctttctagttatgactgaaaataaattttcgtgtaaattaaa  21615700                            --------->O2                            --------->ANAC55(1)                            --------->ANAC58                            --------->TGA1a                            <---------O2                            --------->ANAC55(2)                            --------->ANAC58                            ======================bZIP_DOF                            --------->ANAC46                            <---------TGA1a                         <---------REM1(2)                       --------->ZAT18    --------->AHL20(2) <---------ZAT18              <------ZmHOX2a(1) ->AHL20(2)<---------LBD16<---------ALFIN1        <---------TOE2(3) ----YAB1  <-----------RAV1(2)              <---------TOE1(3)                     ----------->RAV1(1) ---AHL20(2)  <------ZmHOX2a(1)             <---------TOE2(3)                     --------->MYB52(1) -->AHL20(2) --------->At4g35610       <----------DOF2                         --------->ANAC46  <---   attagataaattatcaggagacaagtccacacgtcttccttctttttaggtttaggatgtcgaaaacactctcttgtaaacaaacaacagttttatcgga  21615800                                                                                                -----                                                                                            ---------                                                                                            ---------                                                                                           ------>MYB46(1)             --------->GLK1(2)                                                             ------>MYB83            <---------GLK1(2)                                                            ----------->HVH21            --------->ARR14(2)                                                           --------->DEAR3(1)            <---------ARR14(2)                                                          --------->MYB46(3)           <---------At4g35610                       --------->ZAT6                     --------->DEAR3(2)       <-----------HVH21                  ------------>CBF    --------->TOE2(3)       --------->ARR14(2)       <-----------TGA1               --------->YAB1------>MYB83                      <---------ARR14(2)      <---------ANAC58           <----------DOF2    ------>MYB46(1)          <---------ZAT14<--------      <---------ANAC58    <---------MYB46(3)--------->WOX13(1)--------->TOE1(3)  --------->ALFIN1  -- ---ZmHOX2a(2)  <---------HSFB2a(2)  <---------YAB1----------->RAV1(1)    <---------ANAC46 -------->P   tcaaaatttcgtcagattctagtaatagtggttctctttatcataccaattaccaacagtacaacctcaagaagtagggtatagtggggaaccgacccca  21615900                                   <---------------AGL15                                   <-----------------AGL3                                   --------->YAB1                                   --------->TOE2(3)                                   --------------->AGL15                                  ----------------->AGL3                                  ===================================================================                                  <---------YAB1                                  ----------------->AGL1                       <---------ANAC55(2) ->NtERF2              ----------->GT1                            ------------>CBF >ANAC46  ----------->GT1       <-----------GT1            --------->ANAC58                   <------ >PCF2   <---------HSFB2a(2) <---------ICU4                --------->ANAC58            --------->ICU4 -TCP20  --------->HSFB2a(2)--------->ICU4           <---------ANAC46                 <---------YAB1 ------->MYB52(1)     --------->MYB59 --------->ATHB51<---------MYB46(3)            <---------ZAT6 <-   ccaagggacttatggaaaataagttatgtaaaaattaccataatttggaaacttggtgggcaagacagagcaattcatatatactagtattaatggaggt  21616000                                                                                       --------->YAB1                                                                                       <---------ICU4                         <---------TOE2(3)                                            <---------ATHB12                  ------------>CBF  <----------DOF2                                 --------->WOX13(1)          ------------>CBF       <-----------GT1                              <---------YAB1     <---------ICU4      <---------TOE1(3)                             <---------ARR11(3) =================================MADS_MADS        <----------DOF2     --------->ARR11(3) ---At4g35610     --------------->AGL15      <---------CCA1(2)  ---------->DOF2   ------------>CBF --------ANAC46  <-----------------AG   <----------DOF2<---------GLK1(2)  <----------DOF2       <----   gatgtgaacattaccaatttctcaattagggtttttttctttctttcaaatctctttgattctcgctaaagaacatctttcttattcaatcatgtctctg  21616100                                                 ==============HOX2a_HOX2a                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                                ===============HOX2a_HOX2a                                               <---------ARR11(3)                                               <---------GLK1(2)                                               --------->ARR14(3)                                               <---------ARR14(3)                                               <---------ARR14(2)                                               --------->ARR11(3)                                               --------->AGP1                                               --------->ARR14(2)                                             ----------->ARR10                                           <---------ANAC58                                     --------->ALFIN1         --------->ZAT6                                     <-----------RAV1(1)   <---------ZAT14         <---------ALFIN1   --------->LBD16<---------ANAC58--------->ZAT14      ------->GAMYB        <---------HSFB2a(2)<---------GLK1(1)     --------->MYB46(3)    --------->HSFB2a(2)--------->GLK1(1)    -------->P            <---------LBD16 <------NtERF2 ------>ZmHOX2a(1)           ------>ZmHOX2a(1) -----At4g35610      <---------YAB1  <---------ZAT6------>ZmHOX2a(1)         <----------DOF2      ---   cttctcaaccagcactggaagctatgcttccggaaaccagtgttggcgagatcctctcctcttcactctaatggcctctctttttcctcgttgcaaactc  21616200                                       <---------LBD16                      ------->TEIL  <---------ARR14(2)                  <----------CDC5<---------ANAC58                                                <---             <---------DEAR3(1)  <---------ANAC58                                                ----             --------->DEAR3(1) <---------At4g35610  <---------GLK1(2)                   <---------HSFB2a(2)             ----------->HVH21 <---------ANAC46    <---------YAB1             ----------->HVH21  ---- --->ZmHOX2a(1)  --------->At4g35610--------->ARR14(2)                  <-----------GT1<<<<<<<<<<AtWER   ctccttgtttcatcgtcgacgctgaaccttgtggagcgggtctcggaaaactcaagattgttagtgctggtgattttcgcctcacacagttggagaagaa  21616300                                                            <----------DOF2                                                       <---------At4g35610                                                      --------->MYB111(1)                                                   <------MYB46(1)                                                   <------MYB83                                                  --------->MYB111(1)                             --------->ARR11(3)   <---------MYB46(3)                             <---------AHL20(1)   --------->MYB111(2)                             --------->AHL20(1)   --------->MYB55(2)              ----------->HVH21                  --------->ALFIN1              ----------->TGA1                 <---------ANAC58                               ------>ZmHOX2a(2) ------HSFB2a(1)        ----------->GT1        <---------ANAC58                             --------- ----->HSFB2a(1)       ----------->GT1        <---------MYB46(3)          <---------------AtSPL3 ----->HSFC1(2)  <---------ANAC46   <-----------HVH21<--------P ---------->DOF2             <--------   ggtgcctctcgagttaatgacgggaatggaaaatattgggtcatccaatgggtgggtagctactttgaaagacgatgtagtccgtctccaagatgatcta  21616400                              ------->TEIL                              <---------ARR14(2)                              <-----------ARR10                              --------->ARR14(2)                              --------->GLK1(2)                      --------->ANAC58                     <---------RAP2.6(3)         --------->At4g35610 <---------ARR14(1)            ------>NtERF2         <---------At4g35610 <---------GLK1(2)          ------>NtERF2        ------->TEIL  --------->ANAC46                  <---------At4g35610            ------->MYC3   <---------MYB52(1) --------->ANAC58              --------->ZAT6                     <-------MYC3 >ARR11(3)    <-----------HVH21                   <-----------GT1                     <---------O2 -ARR11(3)  --------->At4g35610             ------>ZmHOX2a(1)<----------DOF2          --------->O2 --   aacccgtttgcatctgcttcagacccgaaacgaatctcgctacctcctcttgtaactctgccgctttgccaaacccaaattgtcatcaacgtggctatgt  21616500                                                              <---------DAG2                                                              <----------DOF2                                                       <---------At4g35610                                                       --------->ZAT2              --------->ATHB12                                                       <---------ZAT2       --------->ZAT6                                                       --------->At4g35610  <---------ALFIN1                              <---------RAP2.6(2)   --------->TGA2(2)      ------>MYB83                            <---------ANAC46       <-----------HVH21       -------->P                          --------->ZAT14         --------->ANAC58         ------>MYB46(1)                          <---------ZAT14         --------->bZIP60(1)     ----------->RAV1(1)              <------ZmHOX2a(1)                   <---------TGA1a        --------->AtMYB61          ------>ZmHOX2a(1) <---------bZIP60(2)   --------->ANAC46      --------->MYB46(3)        ================================RAV       ==================================MYC_MYB        =============================RAV          --------->TGA1a  --------->HSFB2a(2)         ------        ----------->RAV1(2) <-----------RAV1(1)   --------->ANAC58 <---------HSFB2a(2)    <------ZmHOX2a(2)        <---------LBD16  <-----------RAV1(1)      =======================bZIP_DOF <---------YAB1   -- ---->ZmHOX2a(1)----------->TGA1        <---------GLK1(2)   <---------At4g35610 --------->YAB1-------   cctcatcttctcctgaggatgacgactgtgttgtggctgtcaaattctttggacgtcagctcagctttttcagaaccaacactcatgagtggatcaacgt  21616600  Previous    Next  AGI:  At5g53230.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55270.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174) Range:  from: 21616092    to: 21617168    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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