Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------GLK1(2)                                     <---------ANAC46                   --------->ARR14(2)                                   <---------TOE2(3)                   <---------ARR14(2)                                 ----------->HVH21 --------AHL20(2)--------->ANAC46                                   <---------MYB52(1) ------>ICU4  --------->MYB52(1)                             --------->ARR14(2)                 ----- ------>AHL20(2)<---------HSFB2a(2)               ------->TEIL<-----------GT1                   ----- -------AHL20(2)--------->HSFB2a(2)       <---------ARR11(3) <---------ARR14(2)    --------->ANAC58 ----ZAT6--------->ZAT18                  --------->ARR11(3) --------->KAN4(2)     --------->ANAC58 --->GT1 <---------ZAT18            ----------->GT1         <----------TaMYB80     --------->ANAC46   ttaattagtcgggcactaccagaaactcacatactgactagtaaaatctatggatgtattgaatatacccgtttgacgtagaaacaaggcataagagaac  21605800                                                   --------->ANAC55(2)                                               --------->At5g28300                                               <-------GAMYB                                               <-----------HVH21                                            --------->LBD16                                      <---------ANAC58                                      <---------ANAC55(2)                                      --------->ANAC55(2)                                      <---------ANAC58                                   <---------MYB52(1)                                   <---------ARR14(2)                                       <--------                                   --------->ARR14(2)            <-----------RAV1(1) --------->ARR11(3)      <---------MYB52(1)         --------->LBD16   <---------ANAC55(2)               <---------ARR11(3)    ----------->GT1            <---------LBD16----------->GT1 <----------DOF2  <---------ANAC58 --------->MYB52(1)       <----------DOF2   <---------LBD16<---------ARR11(3)  <---------ANAC46  <--- ---->ANAC58             <---------ANAC58  <---------ALFIN1--------->ARR11(3)  <---------ANAC58<----- ---->ANAC58             <---------ANAC58  ------------>AtMYB77  <---------MYB46(3)  <-----------GT1   gcaaaacggttaagtgctcgttcatttgctttctccggttacgttccacggttacatgagacatcttttgttgcccatcttgcttattatcttcttctgc  21605900                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                             --------                                                                    ===============================HOX2a_HOX2a                                                              =====================================HOX2a_HOX2a                                                              ------>ZmHOX2a(1)             ------>ZmHOX2a(2)                                                           ---------->ID1             <---------ICU4                                      ------>ZmHOX2a(1)<----------DOF2              --------->GLK1(2)                            ------>ZmHOX2a(1)          <---------DAG2           --------->YAB1------>ZmHOX2a(1) -At4g35610              ---------->ID1               <---------ANAC58         <---------YAB1-------- -------DOF2       <<<<<<<<<TBF1      --------->LBD16 <---------ANAC58--------->At4g35610 <---------ARR11(3) ----At4g35610  <<<<<<<<<TBF1    <----------DOF2  <----------DOF2   <------ZmHOX2a(1) --------->YAB1   ttctccgtctccgtcttcttcttcttcgtcctcttctttcctggtttctagtctttgctttttcctcttaggagatgagttttcataatcttgatcctta  21606000                                                      <---------ARR11(3)                                                      --------->ARR11(3)                                                     <---------RVE1(1)                                                     <---------GLK1(1)                                                     --------->GLK1(1)                                               --------->ETT(1)                                             <-----------HVH21                                            ----------->HVH21                                            <-----------RAV1(1)  ------>NtERF2                                          <---------At4g35610 <---------ATERF1(1)                                          --------->At4g35610 ------>NtERF2                                          <---------ZAT2     --------->ANAC46 -------MYB59                             --------->ZAT2    <---------LBD16 ----------MYB.PH3(2)           <---------REM1(1)   --------->ARR11(3)                             -- -------MYB46(2)                --------->ALFIN1 <------NtERF2--------->LBD16                   <---- -------MYB52(2)              <---------ANAC46 <---------ANAC46 <---------ALFIN1               ------ ->TOE1(3)                <----------DOF2------->TEIL--------->RVE1(1)                         <----- ->TOE2(3)       <---------MYB46(3)    <-------TEIL <---------ARR11(3)                ----------->GT1   actaactccttggaacttgtggttccatctttaggtgtagatgcagctgtcggagatatctctccggcaccttcaagactctctaagatggcaaatagat  21606100           <---------ZAT14                               ----------->RAV1(2)           --------->ZAT14                      <---------MYB52(1)    ------>NtERF2                              ----------->GT1    --------->LBD16        <-----------GT1     --------->LBD16                 <-----------GT1  <---------LBD16 --------->ETT(2)           <---------LBD16               --------->ARR11(3) ------->At4g35610<---------ETT(2)         --------->ARR14(2)              <---------ARR11(3) --ZmHOX2a(2)  --------->ALFIN1            <---------ARR14(2)      --------->ATHB12 --->ARR11(3)<---------ANAC46              --------->GLK1(2)      <---------YAB1   ------>ZmHOX2a(1) ----ARR11(3)<---------bZIP60(2)          <---------GLK1(1)------>ZmHOX2a(1)--------->CCA1(2)       -   catctccggctagtgaagtgtcgacaaattcacactcttcaagaaaatccggtattatctcctgcatcgtgattagagatatatccttctctctctctct  21606200                              <---------AHL20(2)                               ------>NtERF2       ---------->ID1<---------MYB46(3)                                       --------->ANAC46       <---------MYB52(1)<------MYB46(1)                                    --------->CCA1(2)      <-------GAMYB <---------YAB1                          --------->CCA1(2) <----------ID1     <---------MYB46(3)  <------MYB83                      --------->ARR11(3) --------->ANAC58     --------->MYB52(2)<--------P                  ---------->DOF2 ---------->DOF2 ---------->DOF2   <---------MYB52(1)--------->ATHB12             --------->AHL20(2)   ---------->DOF2 ----->ZmHOX2a(1)   <---------TOE2(3)     ----------->GT1  <---------ARR11(3) --------->ANAC58   tcctcgttcgttgttttgtcttatggttggattttttttttaaacagcaaaataaaagaaagatttagggaaagaaagagacgccaaaagacatatcaag  21606300                                       --------->ICU4                                  ----------->GT1                                                   <                             ---------->DOF2                                                      <--                           <---------------AGL15                <------ZmHOX2a(1)                 ---                          ----------------->AGL1             --------->HSFB2a(2)              <------            ---------->DOF2--------------->AGL15        <-------TEIL                          <------      ----------->GT1     ----------------->AGL2   --------->ANAC58              --------->YAB1  <---  ---------->DOF2         ----------------->AG     --------->ANAC58 <---------ZAT14    ------------>CBF   ttgagaaagagaaataaagagagtgaatgccaaaaggagtaaatatgagggactcgcattcatcgaggactaaactatcgctatcaaatttcaattttta  21606400                                                                         <---------ANAC58                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                             <---------AGP1  <---------AHL20(2)                                         <-----------ARR10  <---------AHL20(1)                                         <---------ARR11(3)  --------->AHL20(1)                              >>>>>>>>>SARD1         <---------ANAC46 --------->AHL20(2)                               >>>>>>>>>CBP60g        <---------ANAC58 --------->YAB1                             <XXXXXXXXXXXXXXXXXXXXMIR865-3P ---------YAB1             <---------LBD16<---------MYB46(3) --------->ARR11(3) -------ICU4         <---------AHL20(2) <---------MYB52(1)   --------->ARR14(2)                  <--- ------>YAB1        <---------AHL20(2) <-------GAMYB <---------LBD16   <-----------GT1           ---- ---AHL20(2)        --------->AHL20(2)<---------ANAC58       <---------ARR14(2)                ------ ---YAB1<---------YAB1 <---------YAB1 <---------ANAC46       --------->GLK1(2)               <<<<<<<< ------YAB1   ----------->GT1         <---------ANAC58      <------ZmHOX2a(1)        <---------TOE2(3)   ttattatattttgatagggttatttattatgcggtttgtgccgttggatgaaatttgggggaggatctaggtttttcgtgtctcatttatgttttagata  21606500                            --------->ANAC58                            --------->ANAC58                            --------->ANAC55(2)                            <---------ANAC55(2)                           --------->SPL7                           <-------TEIL                       <---------------AtSPL8                       <---------------AtSPL3                       --------------->AtSPL8                 <---------------AGL15      ------->TEIL <---------AHL20(2)                                                   <---------ANAC55(2) ------AHL20(2)  <---------AHL20(2)                                                    <-------TEIL ----->AHL20(2)  --------->AHL20(2)                          <---------TOE2(3)        --------->CCA1(2) --->CCA1(2)    <-----------------AGL3                     ---------->DOF2       ---------->DOF2  --- <RAP2.2       --------->AHL20(2)          <----------DOF2--------->CCA1(2)---------->DOF2       ----   taaatatgcatctacatatatatatatggtacgtcttattgtatactttatattacagagataaaggttgcatattgcaaagggaaagatacataaattc  21606600                                                                           ----------->GT1            <---------YAB1                                                 <---------ANAC55(2)         <---------RVE1(1)                <---------ZAT2                   --------->ANAC55(2)        <---------ARR11(3)                --------->ZAT2           --------->ANAC58        --------->ARR11(3)               --------->ANAC58          --------->ANAC46              <---        <---------GLK1(2)    <---------YAB1   ----------->GT1      --------->ANAC58              <---    ---------->DOF2 --------->At5g28300  --------->ANAC58       <---------ZAT18             ---------  <------ZmHOX2a(1)----------->GT1   --------->YAB1         --------------->AtSPL8          --------- --->ZmHOX2a(1)   ----------->GT1 --------->YAB1            <---------------AtSPL8         <---------LBD16 ----->TOE2(3)  <---------LBD16   <---------ICU4  <---------YAB1--------->ZAT14     --------->ANAC46   cttaggaaaagatttttatgggggtaaaattttgaataatcacaagctcggtataattgttttttgtacacacaaacatgtaatacacataaacacggac  21606700  Previous    Next  AGI:  At5g53210.1    Description:  SPCH (SPEECHLESS); DNA binding / transcription factor. similar to MUTE (MUTE), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G06120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69363.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 21603832    to: 21606167    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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