Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <----------DOF2              <---------ZAT14                                            <---------GLK1(1)            --------->ZAT14                                           <---------ANAC58         --------->ZAT14                                           <---------ANAC58         <---------ZAT14         <---------ICU4               ---------->DOF2      <-----------GT1       ----------->RAV1(1)  ----------->RAV1(1)           --------->AHL20(2)  --------->At4g35610      --------->MYB46(3)    --------->LBD16 ------>ZmHOX2a(1) -----YAB1               <-----------GT1--------->DAG2 --------->WOX13(1)<---------ZAT18          <--   gattagctccaacattgcattttgtattaacaacagtaccaaaaggctttccgagttcaattaactcctcttcagtgcattcccatggcaagtttctcaa  21588700                            --------->ANAC58                     <---------ANAC46      <---------ANAC46                     <---------ANAC55(1)   <---------ANAC58                     <---------ANAC55(2)   <---------ANAC58             <---------ARR11(1)          -                     <---------ANAC58  <---------ANAC58                 --------->GLK1(2)          --                 <-------GAMYB         <---------ANAC58                 --------->ARR14(2)       ----     <---------HSFB2a(1)    --------->ANAC58                            ------->TEIL            <----    ------->TEIL<---------MYB46(3)     <---------ANAC46                 <---------ARR14(2)      -----   <---------ARR14(2)<---------ANAC58<---------MYB46(3)                <---------ARR14(1)     ------- -------ATHB12<------ZmHOX2a(1)   <-----------RAV1(1)   --------->ARR11(3)--------->TOE2(3)--------->ZAT6   atgaagaacctttgaaggaggttgcgtgtaacgaaactgtggctggcttgaaacagaagacattgctcacaacgaatcttagagctacaaataacacaac  21588800                                                                 <-------TEIL                                                       ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)                                                      --------->GLK1(1)                                                     <---------ARR11(3)         <---------YAB1                              <-----------ARR10   <---------TOE2(3)                                 --------->ARR11(3) -------->MYB46(3)                --------->ANAC58   --------->ARR14(2) ----->TEIL                  <---------------AtSPL8  <---------AGP1 --->GAMYB            <---------At4g35610            --------->AGP1 -----MYB52(2)        --------->At4g35610           <---------CCA1(2) ---->MYB46(3)        --------->ZAT2   --------->YAB1<---------ARR14(2) -->MYB52(1)    ---------->DOF2   --------->ANAC58  <---------At4g35610   gaaccaaggttatgaacgagaagcagctacagtagtacgaatcacaaaattttcagatctcaacaaattcgtcaaaaaatcaaacaaattgacgcttatg  21588900              --------->DEAR3(1)                                                <---------ARR14(2)     <---------YAB1                    ----------->GT1          <---------AHL20(1)     --------->ICU4                  <------ZmHOX2a(1)          --------->AHL20(2)   <---------ICU4             --------->TOE2(3)        ---------->DOF2          --------->GLK1(2)   --------->YAB1            <---------ANAC55(2)     --------->At4g35610 --------->ANAC58   -------->ATHB1            --------->ANAC55(2)  --------->At4g35610    --------->ANAC46           <   <--------HAHB4           <-------TEIL    --------->AHL20(2)  --------->AHL20(1)  --------->LBD16<-  --------->ICU4          --------->ARR14(2)<---------AHL20(2) <---------CCA1(2)--------->ARR14(2) -- --------->GLK1(2)        <---------ARR14(2)--------->ICU4  <-------TEIL --------->ANAC58    --------   aagaatcattatcgagccgaagaattcaaatacgttataggatgaaaaaattagcagcaaagttcatatattactacgaaagaatccgaaataagaaaag  21589000                         <---------ARR14(2)                         <---------ARR11(3)               --------->CCA1(2)                                                 <------MYB83            ----------->ARR10                                                    <------MYB46(1)         --------->TOE2(2)               <---------TOE2(3)    ---------->DOF2 --------->ARR14(1)         --------->TOE1(2)   --------->ZAT14          <---------HSFB2a(2)    --------->ARR14(2)        <---------ANAC55(2)  <---------ZAT14        --------->ALFIN1         --------->ARR11(3)      <-----------GT1    --------->ARR11(3)    <---------ANAC46              <---------ARR14(2) ------ZmHOX2a(2)        --------->ARR14(2)    <---------ANAC58              <---------ARR11(3) --------ARR11(3)        --------->GLK1(2)     <---------ANAC58              --------->ARR11(1) ------->ARR11(3) ----------->GT1        <---------TOE1(3)  --------->ARR11(3)--------->CCA1(2) -->DOF2----------->RAV1(2)  --------->At4g35610   --------->ALFIN1        ----------->ARR10  <------   agatcatgttacctgagatttgggaaaaatctgcagagaaattagggtttcgcgttggggaagataaagaagagaagaagatttggtgatagggatttat  21589100                    *TSS                   <----------DOF2                <---------ANAC58                                               <---------YAB1  <-----                <---------ANAC58           <----------DOF2                 <----------DOF2  <--------     <---------ARR14(2)                --------->ANAC46                    <---------DAG2   <--------     --------->ARR14(2)          <----------DOF2                    <------------CBF       ------>MYB83     --------->GLK1(2)   <---------LBD16  <---------ANAC46         --------->ATHB12        ------>MYB46(1) ---AHL20(2)   <-------TEIL  <---------ARR14(2)                   <---------MYB52(1)    --------->MYB46(3)   ttgggagaatccatatgtgcgttttatcgcggtttctttaaacggcgttttgttttaagagcgtcttcgttattgggctttatgaatagaaccaactatt  21589200                                      ----------->GT1                              <---------ANAC58                              ----------------->AGL1                             --------->YAB1                              <---------ANAC55(1)                                <---------ICU4     <---------SPL7           <---------ANAC58                                  --------->ICU4 ----YAB1  <----------DOF2    <---------ANAC46--------->AHL20(2)              --------->TOE2(3) ---------AGL3                <---------ANAC55(2)                             --------->YAB1    ----- ---------AGL2           <---------ICU4--------->At5g28300                    --------->TOE1(3)<-----   aatgggccttacgcttttattagcccagtattacgtctaggggtaaaattaaaacaaaattcaagaagagttgattaaaaccataatggtgttttttgtg  21589300                                                        <--------ATHB1                                                        <---------ICU4         <-----------GT1       <-----------GT1          --------->YAB1     --------->TOE1(3)  <---------TOE2(3)              <---------ATHB51                   --------->At5g28300     --------->TOE2(3) <-----------GT1      --------->DAG2                  <---------AHL20(2) ------>GT1       <---------YAB1           ---------->DOF2  <-----------GT1 --------->AHL20(2) ----TOE2(3)     <----------DOF2   --------->ANAC46    <---------ATHB12    --------->AHL20(2)    <---   gtttaaactttaaacccatctttattaacatttttacacaaaaaaaaaagtatttcaataattctccattcgtcaaaaaaaatttaagtttcggtaactc  21589400                                      <---------ARR14(2)                              --------------->AtSPL8                              <---------------AtSPL8      --------->AHL20(2)                             <---------ANAC46         --------->AHL20(2)                             <---------ANAC58         --------->YAB1    --------------->AGL15    <---------ANAC58        <---------YAB1    <---------------AGL15 <----------DOF2        ------>ZmHOX2a(2)                                  -   ----------------->AG<---------ARR11(3)        ===========================HOX2a_HOX2a           <--   ----------------->AGL1------>ZmHOX2a(2)     --------->ARR11(3)                        <----------DOF2 <-----------GT1       --------->ARR11(3)      <---------ARR11(3)    <------ZmHOX2a(1)  --------->TOE2(3) -------DOF2    <---------ALFIN1      --------->ARR14(2)  <---------AHL20(2)         <---------ALFIN1   ttttttccatttttgtcaacacattgatctttcgtgtacatatacacttgatcttataatataaatacagaggaaaacatagcacttccacctttatttt  21589500                                                       <---------TOE2(3)                                                     <---------AHL20(2)                           --------->MYB52(1)       --------->AHL20(2)                        --------->AtMYB61      --------->TOE2(3)     ----------->RAV1(1)                        --------->YAB1      <-----------GT1        <-------TEIL                      ----------->RAV1(1)<---------bZIP60(1)    --------->ANAC58              <------                     <---------ALFIN1    <---------REM1(1)      --------->ANAC58--------->ALFIN1  <--               --------->YAB1<---------ANAC46 ----------->GT1   <---------ANAC55(2)          --------              <---------YAB1 <---------ANAC55(2)<---------MYB52(1) --------->SPL7            --------             --------->ARR11(3)          --------->bZIP60(1)   --------------->AtSPL8    --------->AHL20(2) -------->ANAC55(2) --------->MYB46(3)   <---------TGA2(1)     --------------->AtSPL3----------->GT1 ---------GT1<---------ARR11(3)          --------->TGA2(1)---------->DOF2     <---------ANAC46-------   tcacatgatcaacaatatcatcaccaccataacgtatagagtgatgtaacgttatttaatgaaagcacgtacaacatatgaggtgtttagataaaatatc  21589600  Previous    Next  AGI:  At5g53180.1    Description:  polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative. Identical to Polypyrimidine tract-binding protein homolog 2 [Arabidopsis Thaliana] (GB:Q9FGL9); similar to PTB (POLYPYRIMIDINE TRACT-BINDING), RNA binding [Arabidopsis thaliana] (TAIR:AT3G01150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69378.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66869.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 21585426    to: 21589120    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g53190.1    Description:  nodulin MtN3 family protein. similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT1G21460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69367.1); contains InterPro domain MtN3 and saliva related transmembrane protein (InterPro:IPR004316) Range:  from: 21589477    to: 21591555    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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