Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------MYB52(1)                              ------>ZmHOX2a(1)                  ------>MYB83                            --------->YAB1                 ------>ZmHOX2a(1)          <---------bZIP60(1) ============================HOX2a_HOX2a<<<<<<<<<MYB98          --------->bZIP60(1)--------->TOE2(3)          ------>ZmHOX2a(1)                           - ------NtERF2--------->YAB1<<<<<<<<<ARR1           ------>ZmHOX2a(2)<-------GAMYB          <--------- ---->NtERF2--------->ICU4 <<<<<<<<<ARR1           ===============HOX2a_HOX2a            <---------At4g35610 ------>RAP2.6(2)          <<<<<<<<<ARR2         --------->ARR11(3)<---------ANAC58  --------->TOE2(2) ------>DEAR3(1)   --------->ANAC46              <---------ARR11(3)<---------ANAC58 --------->MYB46(3) -->DOF2<---------ZAT18    <<<<<<<<<ARR2     <---------At4g35610 ------>MYB46(1)   -------->P      --   ccgcccatagtgccatcatcaacaccacaatcctaaacttgctcttcttctgatcttcctccttaccttccgttactccattactaacctccgcttcttc  21584800                                                                                                   <-                        ----------->RAV1(1)                                                        --                        --------->ANAC46                                                          <--                       <---------MYB55(2)                                                        ----                       --------->MYB46(3)                                                       <----                      ------>MYB83                                                              -----                      ------>MYB46(1)                                                   ----------->RAV1(2)                    <---------ALFIN1                                                    <---------ZAT2         <---------ANAC58                                                               <---------At4g35610     <---------DAG2 --------->AtMYB61                          <---------ARR14(2)       --------->At4g35610     <----------DOF2--------->DEAR3(1)                         --------->ARR14(2)       --------->ZAT2  <---------ALFIN1 --------->MYB46(3)                    --------->TOE2(2) <---------ATHB12     ----- ----->ZmHOX2a(1)--------->ANAC46 <---------YAB1      <---------ARR14(2)  ------>MYB46(1)    -------- -DOF2   <---------ANAC58       --------->WOX13(1)    --------->ARR14(2)  ------>MYB83<-----------RAV1(2) ------->ANAC46 ------>ZmHOX2a(1) <---------ATHB12  --------->LBD16      --------->WOX13(1)  <-------   tcctccacttttcgtctcctcaccacccacaaatctatcattcgtctctaattccgaaacctccgtatcggaaaccaatctattactctcagctgaatcc  21584900      ---------->DOF2  --------->TOE2(3)  --------->TOE1(3) --------ARR14(2)                                             --------->ICU4 ------->ARR14(2)                                        --------->ANAC46 -------MYB52(1)                                         --------->ANAC58 ----->LBD16                                ----------->RAV1(1) -----ANAC55(2)                            ----------->HVH21  <---------ATHB12--------->ANAC58 ---->ANAC55(2)                    --------->GLK1(2)     --------->ANAC58     --------->ANAC58 ---->ANAC46                       --------->ARR14(2) ----------->HVH21    <----------ID1 ->ARR14(2)                    --------->YAB1       <---------ANAC58--------->ANAC58 --ARR14(2)      <----------DOF2  <---------GLK1(2) <---------ANAC58--------->ANAC58              <--   gtaacctcaaaagcggagtctttgggaatgaaatcagaatcggaagcgacattgtcttgacgcaatgagcaaggaaggggacgaaatcgagagttgtgaa  21585000             --------->At5g28300            ----------->GT1        --------->ZAT18      ---------->DOF2              <---------ZAT18    >>>>>>>>>TBF1            --------->TOE1(3) -------ARR14(2)               --------->GLK1(2) <---------ATHB12          ---------->DOF2          -   gaactgaagaaagacggtagaaacttgagagagattgtggacaaaaactcaatgaagaagaagagaatagacaagggtaaagcttaaacgaagaagtatg  21585100                                                        <---------TOE1(3)                                                        <---------TOE2(3)                                                  <---------ZAT6                 <<<<<<<<<TBF1              ---------->DOF2                   <---------ANAC58          <---------ARR11(3)     <------ZmHOX2a(1)                          <---------ANAC46         <---------CCA1(2)    <----------ID1                              <---------ANAC58       <----------DOF2  <------ZmHOX2a(1)                      --------->ARR11(3)            ------>ZmHOX2a(1) -------->ALFIN1     --------->GLK1(2)  <<<<<<<<<<<<<<<<<LFY          --------->TOE2(3)   gagaggaggacgaagaaaaagagaagcttgaagagtagaagaagacattggagtgtttagggttttttgaatcctttatcttcttcttccttcttctctt  21585200                                                                  <----------DOF2                                                           ------>ZmHOX2a(1)                                                         ------>ZmHOX2a(2)                                                        <------ZmHOX2a(2)                                                        =================================HOX2a_HOX2a                                                       --------->ARR14(3)                                                       <---------ARR14(3)                                                       <---------GLK1(2)                                                       <---------ARR14(2)                                                       --------->AGP1                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                         <---------LBD16=============HOX2a_HOX2a                                      *TSS<---------LBD16================================HOX2a_HOX2a                                <---------ANAC46       --------->ARR14(2)                                <---------ANAC58     ----------->ARR10  <----------DOF2                            <----------DOF2   --------->PCF2  ------>ZmHOX2a(1)   ------>ZmHOX2a(1) <----------DOF2 ---------->DOF2<---------ANAC58 ----------->RAV1(1) <---------ARR11(3)       <------   actctttttatttcagagcaaaagagaagactttacttggagactcgggagccacaagatcctcctctctttatctttctcttcctgtgttttttttttc  21585300                                                                <---------ICU4                                                                <--------ATHB1                                                                <---------AHL20(2)               --------->ARR11(3)                               <---------AHL20(1)               --------->GLK1(2)                                --------->AHL20(2)               <-----------ARR10                                --------->YAB1               <---------ARR11(3)                              <---------YAB1              --------->RVE1(1)             <-----------GT1    --------->ICU4              --------->CCA1(1)    --------->MYB46(3)        --------->YAB1       --------->ATHB12     ----------->GT1    ----------->GT1<---------ATHB12     <---------ATHB51     --------->ICU4   --- -----GT1   --------->AHL20(2)     ------------>CBF         <---------ATHB12     <---------YAB1  <---   ttcacttgagttaaaaaaatcttatccagtaattctaaccaatgtttcacaaaatttggccaataataatttttcacttgtacatgattagacagagttt  21585400                        <---------ANAC46                        <---------ANAC58                        <---------ANAC58                                                         ----                     --------->ALFIN1                                                  ------>ZmHOX2a(1)    --------->YAB1 <---------ANAC58                   --------->ARR11(3)              --------->TOE2(3)   <---------YAB1  <---------ANAC58                   <---------ARR11(3)              --------->TOE1(3) <---------ICU4    --------->ALFIN1              <---------ATHB12                   <---------YAB1 ------>YAB1      <---------MYB46(3)           --------->GLK1(1)                   <-----------GT1  < ------YAB1 --------->CCA1(2)             ----------->GT1                    ----------->GT1     <---   tgataatgaaaatgatatggtgagtggcgagagagagacatagatagagaaatcaagagcttctaatacatttctcaaatggttttatccttaaaaaaac  21585500                                                                              <----------DOF2                                                                          <----------DOF2                                    --------->MYB52(1)                 <---------ARR11(3) ----->ARR11(3)              --------->TOE1(3)                      <-----------GT1                 - ----------DOF2              --------->TOE2(3)                    --------->AHL20(2)                < ------ARR11(3)              <----------DOF2          ---------->DOF2  --------->ARR11(3) <----------DOF2   atcttttggacacaagtacaagtgttccaaactttaaaaaacagagctaagagaaataaagagagagattaaacatctttctttgtcttcgacttttgag  21585600                                                                     <---------ARR14(2)                                                                     ------->TEIL                                                                     --------->ARR14(2)                                                                   --------->LBD16                                                                 <---------LBD16                                                                ------>MYB46(1)                                                --------->ALFIN1------>MYB83                                              <---------ANAC46--------->AtMYB61                                         ---------->DOF2      <---------ALFIN1                      -         <-----------GT1              --------->YAB1         --------->MYB46(3)                  <---     <----------DOF2                ----------->RAV1(1)    <-----------GT1                      <---- <----------DOF2                   --------->AtMYB61    --------->At4g35610                     ----- -------->HSFB2a(1)               --------->MYB46(3)    <---------At4g35610                     <---- ---------HSFB2a(1)             <------ZmHOX2a(1)    <------NtERF2--------->ANAC46           --------   ggactttcttttctctctctaatgcattggaccaggaccaccataatgctgtggaggcatatgaccacccggaccttgatgcattgagcttgaagatggt  21585700  Previous    Next  AGI:  At5g53170.1    Description:  FTSH11 (FtsH protease 11); ATP-dependent peptidase/ ATPase/ metallopeptidase. similar to FTSH4 (FtsH protease 4), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT2G26140.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66870.1); similar to Ftsh-like protease [Pisum sativum] (GB:CAH10348.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69377.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA+ ATPase, co Range:  from: 21579973    to: 21585238    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g53180.1    Description:  polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative. Identical to Polypyrimidine tract-binding protein homolog 2 [Arabidopsis Thaliana] (GB:Q9FGL9); similar to PTB (POLYPYRIMIDINE TRACT-BINDING), RNA binding [Arabidopsis thaliana] (TAIR:AT3G01150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69378.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66869.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 21585426    to: 21589120    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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