Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------AHL20(1)                                                         <---------AHL20(2)                   <------                                        <---------AHL20(2)                                 <---------ICU4                                        --------->AHL20(2)                                --------->ICU4 ---->MYB46(1)                          --------->AHL20(1)                                <---------YAB1 ---->MYB83                             <---------AHL20(1)                              --------->YAB1 ------MYB59                           <---------AHL20(2)--------->AHL20(1)            ----------->GT1 ------------AGL15           <---------TOE2(3)          --------->AHL20(2)             <---------ZAT6 ----------->AGL15           <---------TOE1(3)          --------->YAB1          <---------WOX13(1) ------------>AG          <---------MYB52(1)    ------->TEIL <-----------GT1 <---------AHL20(2) -----GT1                <-------GAMYB --------->AHL20(2)--------->AHL20(2)  --------->AHL20(2)   caaattttgttctccacaaatttagaccgttaagtttaaaattaaatttgaacgtctattatattactcaattgatagtttaattgatactgataattaa  21559800                                                                               <---------ARR14(2)                                                                            --------->ETT(1)                                                                          <-----------HVH21                       <---------ANAC58                                  <-----------RAV1(1)                       <---------ANAC58                                --------->ZAT2                       <---------ANAC46                                <---------ZAT2                     <---------ARR11(1)                                <---------At4g35610                     --------->ARR14(2)                                --------->At4g35610                     <---------ARR14(2)                              ------>ZmHOX2a(1)                    <---------CCA1(2)                            --------->ARR14(2)               <---------WRKY18(1)                             <------MYB46(1) --------->ARR14(2)              --------->WRKY38(1)                              <------MYB83 <---------ANAC46              --------->WRKY45                                 <---------HSFB2a(1)              ----------->HVH21                                <---------MYB46(3)              --------->WRKY12                                 --------->HSFC1(2)             <---------MYB52(1)                                --------->HSFB2a(1)             --------->DOF5.7(2)      ------->TEIL  ------->TEIL <---------ARR14(2)                -- ---AHL20(2)<-------GAMYB       --------->ATHB12 <---------YAB1<---------HSFC1(2)                  <-   gtgctaatagagaccgttgaccgtatcgtgtccctgattgtacgttgtcttatgaatgccaagggaggttcctagctgtcggatttggagaccagtctca  21559900            <-----------GT1         <---------ICU4      <---------ICU4      --------->ATHB12      --------->YAB1     <---------YAB1                                       <---------AHL20(2)  <---------AHL20(2)                                      --------->AHL20(2)     <---------YAB1 ------->ARR11(3)                            <-----------HVH21             <---------AHL20(2) --------ARR11(3)                        <---------ICU4  --------->AHL20(2)--------->AHL20(2)   agattttatcattgttactacttcataatccaaatttgtctaaacattgtcaactcttatttaattgtttatacgaataaaatactattaacatcgaatt  21560000                                                                   --------->YAB1               <----                                                                  <---------YAB1             --------                                                        --------->ANAC58                     <-------                                                        ----------->GT1--------->ANAC58      <-------                                           --------->MYB46(3)   --------->YAB1               --------                                         --------->WOX13(1)     <---------ICU4               <-------            <----------DOF2             <---------WRKY12--------->ANAC58       <---------ARR11(3)         <---------ARR11(3)        ---------->DOF2      --------->ANAC46       --------->ARR11(3)         --------->ARR11(3)--------->CCA1(2)        <---------ALFIN1   --------->ANAC58      --------     --------->YAB1       <---------ARR14(2)------->GAMYB--------->LBD16   ---------->DOF2  <--------   caaactatcaagacctttgaatatggacgatatgagtcaaagtcaaccatcttcccacccgtaaaattatcacaagaaaaagacatttgtaagagtatct  21560100                                                          =============================HOX2a_HOX2a                                                          ------>ZmHOX2a(2)                                                          ==============HOX2a_HOX2a                                                         ==============================HOX2a_HOX2a                                                         ===============HOX2a_HOX2a    --------->RAP2.6(3)      <---------LBD16                                    <------ZmHOX2a(2)            --------->ATHB12 ------DOF2                                             --------->ARR14(2)           <---------ATHB12 ->ARR14(2)                                             <---------ARR11(3)      ===================== --ARR11(3)                                             <-----------ARR10       ------>ZmHOX2a(1) --ARR14(2)                                             --------->ARR11(3)    ----------->RAV1(2) ->ARR11(3)                                     <---------RAP2.6(3)         <---------ALFIN1 ----ARR10     <---------AtLEC2                 <-----------HVH21        <---------ALFIN1 ->GLK1(2)--------->ARR14(2)        <-------GAMYB       <---------ARR14(2)  --------->AtMYB61 -ARR14(1)<---------ARR14(2)       <-----------RAV1(1) *TSS      ------>ZmHOX2a(1)   --------->ICU4   ttctcttcttcggatttgaatgaaaaatgacataatgctgttgctaatgcagtcatgggatctactccttatattccacctcctgcaatgactgcatcaa  21560200                                                                                     ------->GAMYB                                                                                   --------->At4g35610                                                                                   <---------At4g35610                                                                                 <---------WRKY38(1)                                                                                 --------->ZAT14                                                                                 <---------WRKY12                                                                                 <---------ZAT18                                                                            --------->ZAT14                                                                            <---------At4g35610                                                                            --------->ZAT2                                                                            --------->At4g35610                                                                         --------->LBD16                    <---------LBD16                                     <---------ANAC46          ---                <-----------GT1                                         --------->HSFB2a(2)       <--     ------>ZmHOX2a(2)               <----------DOF2                    <---------HSFB2a(2)       ---   <---------ARR11(3)          <-------TEIL        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <----------DOF2 ===========HOX2a_HOX2a  <------ZmHOX2a(2)     --------->MYB46(3)      <---------LBD16  <---------DAG2   gtcttgatctcagtctttttacgacggatcaagtccattctttaatacaacaactcaatactcatcttcatgttccggagcagtcaactccctttccatc  21560300          --------->YAB1   --------->YAB1                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->AtMYB61                    --------->ZAT2 -------->P                             <---------ZAT2    <---------AHL20(2)               <---------ICU4 ------>ZAT2<---------YAB1              <---------At4g35610                  <-----------GT1    <---- -------At4g35610                       --------->At4g35610  <---------GLK1(1)            <---------ATHB12 ------>At4g35610            <---------MYB111(1)--------->ICU4    --------->ANAC46--------->CCA1(2)   agctaccatcactgatcatggagctatggcaactacttctacagctggtaatgtttctattgaatttccctcaacaagtttacgatatgaaaatcattct  21560400                                <-----------GT1                             --------->AHL20(1)                             <---------AHL20(2)                             <---------AHL20(1)                         --------->YAB1                         <--------HAHB4             <---------ANAC46                        <---------YAB1              <---------ANAC58                        --------->ICU4              <---------ANAC58                      --------->YAB1               --------->ATHB12                         <--------                   <----------DOF2                <---------YAB1    --------->ALFIN1      <----------            --------->ATHB12--------->AHL20(2) --------->ICU4  <<<<<<<<<<<<<<<<<LFY    <---------MYB46(3)            <---------ICU4 <---------YAB1      <---------YAB1 ----------->HVH21    --------->ICU4 ------DOF2<---------YAB1<---------ICU4 <-----------GT1    --------->MYB52(2)      <---------YAB1   ttcacatttcaacatcattgtctttcatcattatattccattttgcctcatgatgcttggatagttgacagtggagctagtagtcatgtttgttctgatt  21560500                           <---------ANAC46                       <-----------HVH21                                        --------->ANAC58   --------->ICU4     ------>ZmHOX2a(1)                                         --------->ANAC58 -YAB1                <---------------AGL15                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------AGL1    <----------DOF2   <-----------GT1     --------->ZAT18<---------MYB52(1) <---------ZAT18   tggcaatgtttagtgagacttttcctgttactggtattacagtctcacttccaaatggcactagagtacccattagtcacacaggcacagtgcatatttc  21560600                                                                                           --------->At4g35610                                                                                           <---------ZAT2                                                                                  <---------AHL20(2)                                                                  <----------DOF2<---------YAB1                                                             --------->MYB52(2)--------->YAB1         <----------DOF2                                 <---------ZAT6     --------->YAB1 <---------At4g35610   atccacattgactttgcataatgttttatatgtttcaacattcaagtttaatctcatcagtgttagttctttacttatgcataataaatgttcagctcat  21560700  Previous    Next  AGI:  At5g53135.1    Description:  transposable element gene. copia-like retrotransposon family, has a 6.9e-199 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 21560155    to: 21563781    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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