Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ANAC46                                                                                    --------->ANAC58        ------->GAMYB                                                      <---------ZAT6       <---------MYB52(2)                    --------->ICU4           >>>>>>>>>>>>>>>>>LFY      <----       --------->MYB46(3)               ----------->GT1             <----------DOF2 --------->ANAC58-   cctgattcaacaaacttcaattcaattcaacaatttcgatttcagtaaaaatcaaactcaaatttcaaaactttccagtgtcaaaaacgcaattcgacta  21557900                                                                               ------>ZmHOX2a(1)                                                                           <---------ARR14(2)         ---------->DOF2     ----------->GT1                          <---------ETT(1) -----ZAT14                 <---------TOE2(3) ------>MYB46(1)     <---------ANAC58           <------ZmHOX2a(1) ---------->GT1             <---------TOE1(3) ------>MYB83        <---------ANAC58    <----------DOF2   aacagcaaaaaaaaaggaagaaacttgtttgaggtaaaaaatcaaaccgaacatggacaagtgtgtttgcttccgacaatcctgtagacttttgaggaga  21558000                                                     <----------ID1                                                     ----------->GT1                                                   ---------->DOF2                                              ------>MYB83                     ---------->DOF2         --------->ANAC46             ---------->DOF2                --------->MYB46(3)  --------->ARR11(3)     ---------->DOF2           <---------ATHB12              <-----------GT1        <---------ARR11(1) <---------LBD16       ----------------->AGL3<---------GLK1(1)------>MYB46(1)  <---------CCA1(2)   ------>ZmHOX2a(1)  --------->YAB1<----------ID1  <-----------GT1 --------->AtMYB61                  --------->LBD16  -   acaataagaaccaataaaagggcaaaagaagaaatcactgtttaaacccaccaaaaagaaaaatcaaatctttgttttgtttttcctcggaaagagcgaa  21558100                                     --------->AHL20(2)                                  ----------->GT1                               <---------ZAT2                               --------->At4g35610          --------->LBD16      <---------At4g35610                                   >>>>>>>>>TBF1  -    ----------->HVH21       <------ZmHOX2a(1) --------->ARR11(3)              ---------->DOF2      -- --------->DOF2  ---------->DOF2 ----------->GT1       ---------->DOF2     >>>>>>>>>TBF1          <--   actaaagtgacccagaaactaaagaagagaggaagctgataaaatgaagaaattggagaaagagagagagtgatgaagaagaaagaagaagaagagattg  21558200                                                       *TSS                                                       ---------->DOF2                                                     --------->ANAC46                                                <---------ARR14(2)                                                --------->ARR14(2)                                              --------->HSFC1(2)                                              <---------HSFC1(2)                                    <---------ANAC46 --------->ANAC58            --------->YAB1    ---------->DOF2      <------ZmHOX2a(1)    <---------HSFB2a(1)               <---------YAB1  <---------YAB1        ----------->HVH21     --------->HSFB2a(1)              <-----------GT1 -------->YAB1        --------->At4g35610   <------ZmHOX2a(1)                 <-----------GT1 ------->ICU4  <----------DOF2    <------ZmHOX2a(1)  --------->ANAC58        <---------AHL20(2)     - -------WOX13(1)   <---------YAB1----------->HVH21  --------->LBD16<----------DOF2   <---------AHL20(2)   aatgatgaaagtgaagcctttatcagaggacagagaggacggggaaggagtttccacgaaagtcacaaacttttgctattttatcatttttttcttcgat  21558300                                     <---------TOE1(3)                                     <---------TOE2(3)                                    ---------->DOF2                --------->ZAT14                               --------->AHL20(2)           <-----------GT1                        <-                               <---------AHL20(2)       <-------GAMYB                      <---------GLK1(1)              <-----------GT1 --------->AHL20(2)       ----------->GT1   <----------DOF2  --------->ARR11(3)   <---------AHL20(2)         <---------AHL20(2)    ------------>MYB.PH3(1)               <---------ARR11(3) -------->TOE2(3)             <---------AHL20(1) ---------->DOF2<----------DOF2       ---------->DOF2   tttcttaaattttgtttcactgtttttgttaatttttttaaagttattccaaaaagacagttatacctttgcagtctttgatacttcaaaaagatttcgg  21558400                                     <---------AHL20(2)                                    <---------AHL20(2)                                    --------->AHL20(2)                               <----------DOF2           --------->WRKY45 --------->ARR11(3)         <----------DOF2    <---------ARR11(3)             <---------------AGL15      <-----------GT1   --------->ANAC58                   <----------DOF2 ------>MYB83           --------->ANAC58                  <---------DAG2 ------>MYB46(1)   <---------------AtSPL3              <-----------GT1 --------MYB59     <---------------AtSPL8         <-----------GT1   accaaatttaactttgactattaagtacgaaatcttttttaaattgagtttttaacttcaccttttagtagaaaaatatgttctgaattgagttgtcagt  21558500                                                                                                  ---                                                                                                -----                                                                                              -------              <-----------RAV1(1)                     <---------AHL20(1)                      <------             --------->ARR11(3)                    --------->AHL20(2)      --------->YAB1   ------>ZmHOX2a(1)           --------->ARR14(2)                   --------->YAB1        ----------->GT1     -----------           <---------ARR14(2)     <-----------GT1  --------->YAB1   ---------->DOF2  --------->REM1(1)   tttttagtagacgaatatgttggaagattacagaattcacaggctcacaacaataatatatgtagttttcaaaagtaaaataatgctacatttcctgatc  21558600                                      --------->ANAC55(2)                                      <---------ANAC55(2)                                    --------->YAB1                                   <---------ATHB12                                 --------->WOX13(1)                           <----------DOF2                        --------->ARR11(3)                        <---------AHL20(1)                  <---------ANAC55(2)                 ----- --->ZmHOX2a(1)         --------->AHL20(1)                  --------->ANAC55(2)                 <---- ->ZmHOX2a(2)           <---------ARR11(3)                --------->YAB1  --------->ANAC58    ------- -->ARR14(2)           --------->CCA1(1)    <---------AHL20(2) ------->TEIL        ---------->DOF2 -- ---ARR14(2)           --------->RVE1(1) ------->TEIL    <---------ATHB12 --------->ANAC46   <------- >RAV1(2) --------->ARR11(3)   <---------YAB1          --------->WOX13(1) --------->ANAC58 --------->WOX13(1)   ctctcatccatagatgttgaaagaaatatctttatcaatcatgtattttttttttgtcaatcatgtatttgtttgcacacaaaaaaaaagagtcaatcat  21558700                      --------->AHL20(2)             <-----------GT1                      <---------AHL20(2)             --------->MYB52(1)                  <---------YAB1                  --------->YAB1                --------->YAB1                  --------->AHL20(2)                -------->HAHB4                  <---------AHL20(2)             --------->YAB1                    <---------AHL20(2)             <---------ICU4                    --------->AHL20(2)            --------->ICU4                     --------->YAB1                                <-------        <---------AHL20(2)                 <---------AHL20(2)                            <---------AHL20(2) ---->ANAC55(2)<---------YAB1            --------->TOE2(3)                              --------->AHL20(2) -----ANAC55(2)--------->ICU4            --------->ANAC55(2)                            <---------AHL20(1) -->YAB1--------->AHL20(2)            --------->ARR14(2)                                <---------AHL20(2) ----->TEIL--------->AHL20(1)         <---------ARR14(2)                             --------->YAB1 --ATHB12 --------->YAB1   <-----------GT1 --------->AHL20(2)                     ------>ZmHOX2a(1)   gtatttttaaaaaaataatgataattttttgacaattccatatacttaattaaaataactgtttatgccatttagcaaagtttcctataattttttttat  21558800  Previous    Next  AGI:  At5g53130.1    Description:  CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel. Identical to Cyclic nucleotide-gated ion channel 1 (CNGC1) [Arabidopsis Thaliana] (GB:O65717); similar to ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G01340.1); similar to ATCNGC13 (cyclic nucleotide gated channel 13), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G01010.1); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) [Arabidopsis thaliana] (TAIR:AT Range:  from: 21554947    to: 21558255    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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