Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <------ZmHOX2a(2)                                 --------->CCA1(2)          <---------AtMYB61     --------->AGP1                                    <---------YAB1          <---------MYB46(3)    --------->ARR11(3)                           <---------YAB1         <---------MYB52(1)     <---------ARR11(3)                         --------->YAB1           <         <--------P            <---------GLK1(1)               --------->ARR14(2)--------->ARR11(3) - -------->HSFB2a(2)            --------->GLK1(1)               <---------ARR14(2)<---------ARR11(3) - ---------HSFB2a(2)       --------->REM1(2)             ---------->DOF2   <---------YAB1           -- ----ANAC58         --------->MYB52(1)<---------ATHB12 <---------ATHB12 --------->YAB1        <------ ----ANAC58<------MYB83   --------->ZAT14             <-----------HVH21<---------YAB1        <------- ----ANAC46<------MYB46(1)<---------ZAT14      ----------->HVH21       --------->ICU4       ---------   tacgagaaccagttggtcgaaacaactgtgcagagatccaatgaagtatatgaccccatcaagcgtatatgttattatcataatatcattgtatagattg  21498300                                      --------->HSFB2a(2)                                  <---------O2                                  --------->TGA1a                              <<<<<<<<<GATA-3  ==========================================bZIP_DOF                     ------>MYB83  ---------->DOF2             <<<<<<<<<GATA-2                            ------>MYB46(1) ------NtERF2                 <<<<<<<<<GATA-4                          <---------MYB46(2)           < -------->ANAC58              <<<<<<<<<GATA-1                          <---------MYB111(1)          < -------->ANAC58             --------->ARR14(2)                     --------->REM1(1)               < ---->NtERF2   --------->GLK1(2)  --------->ANAC46              --------->At4g35610                -- ---WOX13(1)  <---------GLK1(2)   --------->O2                  <---------ZAT2                 ------ --GLK1(2)<-------TEIL --------->ICU4 <---------HSFB2a(2)       --------->ZAT2    --------->MYB52(1)< >ATHB12 --------->CCA1(2)   ------->TEIL    <-----------GT1    <---------At4g35610            <-----   gcaccaaagagatacagaatttgtaagaatgaatccacgtctagtagtaacctctctccatttctcagcttcacctactcaaacaaacagtttcaattgg  21498400        <----------DOF2     ------->TEIL    <---------CCA1(2) ---------ANAC58 ---------ANAC55(1) ---------ANAC58                                         <---------RVE1(1) ------->MYB52(2)                                        <---------CCA1(1) ----->GT1                                              --------->ARR11(3) ---------ANAC46                                        <---------ARR11(3)                        <-- ----MYB46(3)                                           <---------AHL20(1)    <---------ARR14(2) ----   ttacttgtatcttttaaaacaaacaaatagagaaaccaaaatcaataaactggaataagatatttcaaattgtaacagcgaaaccagactcatgttgaga  21498500                   --------->TOE2(3)                 --------->MYB52(1)                ------->GAMYB               <---------MYB52(2)               <---------MYB46(2)              --------->At4g35610              <XXXXXXXXXXXXXXXXXXXXMIR869.2            <---------WRKY45            <---------WRKY38(1)                                                           ------>ZmHOX2a(2)            <---------WRKY12                                                        <------------CBF           <<<<<<<<<<WRKY11                                   <-------TEIL        <---------YAB1      --------->TOE2(3)<---------TOE2(3)                     <-----------GT1    <---------AHL20(2) -----TEIL <<<<<<<<<<WRKY6                    <---------GLK1(1)                 --------->AHL20(2) ----->CCA1(2)<---------At4g35610  --------->AHL20(2)     ----------->GT1 ----------->RAV1(1)      <-   tacatttacattagtcaactaacttaatgtaagaaaattcaatacatgaaatctctaaatgagttacatttttagacaacatttaaaattgatctgttac  21498600                                               --------->AHL20(2)                                               ----------->TBP                                             ------>ZmHOX2a(1)                                           ------>ZmHOX2a(2)                                         <---------ARR11(3)                                         -                                     <---------ANAC46        <---------ANAC58                      --                                     <---------ANAC55(2)     <---------ANAC58      *TSS           ---         <----------DOF2             <---------ANAC58     <----------DOF2   --------->ANAC58 <-------         <---------DAG2              --------->ANAC55(2) <---------DAG2     --------->ANAC58 ======== ---------DOF2                       <---------ANAC58 <-----------GT1     ---------->DOF2    <-------   actttgagttacttttggtttatctaagaaaaacttgtttcgtgatcctataaatactacctttcttgctaaatccaaaagcatccaaacatctaaacca  21498700                                                                                                    -                                                                                                    -                                                                                                   -- ----------->GT1                                                          <-----------GT1  --------->ICU4 ----------------------->ANAC81                                       <---------WOX13(1) ------------ ------->DAG2                             --------->ANAC58           >>>>>>>>>ARR2      ------------- ------->DOF2               ---------->DOF2                         --------->ATHB12    ------------- ----------AGL1      ----------->GT1      --------->ANAC58         <---------YAB1  <-----------RAV1(1) ==================================================================================================== ----------AG    ---------->DOF2---------->DOF2                 --------->ICU4 <----------DOF2  <----   aaaaggaaacaaaacatatcaaagggttaacaaagaaagatgggaagcaaaactattctctcagtcattttgattgtttccctttgtgttgccatttttg  21498800                                          --------->HSFB2a(2)                                       <---------ARR14(2)                                       --------->ARR14(2)                                     --------->HSFB2a(1)                                     <---------MYB46(3)                                     <---------DEAR3(2)                                     --------->HSFC1(2) ----------->RAV1(2)                                     <---------HSFC1(2) --------->O2                                     <---------HSFB2a(1)--------->TGA1a                                    <---------DEAR3(1)  <---------TGA1a                                  ------------>AtMYB77  --------->ZAT2                                  ================================MYC_MYB                                  ------>NtERF2         <---------ZAT2                                 --------->DEAR3(1)     <---------O2                                 ----------->HVH21    <---------ALFIN1                              ------->GAMYB     --------->HSFC1(2)                              --------->At1g77200  <-----------GT1                              ----------->HVH21 <---------HSFB2a(1)                              ====================================MYC_MYB                              --------->DREB2C(2) <-----------GT1                      <---------MYB46(3) -------->ANAC58              --------->DEAR3(1)--------->HSFB2a(1)         ----------->GT1 -------->ANAC58             --------->MYB46(3) <---------HSFC1(2)        ------>ZmHOX2a(2) ------->WOX13(1)            --------->DEAR3(2)<---------KAN4(2)        --------->ARR11(3) --->AGL15                 <---------ALFIN1--------->LBD16              <---------AGP1 <------MYB46(1) ---->AGL3                 --------->DEAR3(1)====================================HOX2a_HOX2a<-------- ---->AGL1                 --------->AtMYB61 <------ZmHOX2a(1)   --------->ANAC55(2)   <------MYB83 =====MADS_MADS         --------->ANAC46  <---------HSFB2a(2)<---------ANAC58         <---------AtMYB61 -------HVH21          --------->MYB46(3) <---------LBD16    <---------ANAC58      <-----------RAV1(1)   tcactcaaggagtagctcatatgcaaacaccaccgacgacggttccaggaattttcccacctggcttacctattgatctggtaaaatgttggtcgtctct  21498900                           ------>ZmHOX2a(2)                         --------->ARR14(2)                         <---------ARR11(3)                --------->ZAT18                   <---------HSFB2a(1)                <---------ZAT18                   --------->HSFB2a(1)               <---------ANAC58                   <---------HSFC1(2)               <---------ANAC58               ----------->GT1           =======================HOX2a_HOX2a--------->HSFB2a(2)                   <---------ANAC58           <------ZmHOX2a(1)      <---------ATHB12--------->HSFC1(2)               <---------ANAC58           ======================HOX2a_HOX2a <---------HSFB2a(2)              <---------AtLEC2 -CCA1(2)<---------TOE2(3)<------ZmHOX2a(2) <---------LBD16           --------->LBD16        --------   cttcaatgttgaaggatgtgtgctcgagatcgccaaatcaattttctctggaaaattcgaaaatgtcgaagccgcatgttgcaaggcgttttcgacctta  21499000                                                                                             --------                                                                                             --------                                                                                             --------                                                             <---------ZAT2                <---------ALFIN1                                                             --------->At4g35610          --------->ZAT14                                    <---------MYB52(1)       <---------At4g35610          <---------REM1(2)               <---------ALFIN1--------->ARR14(2)            --------->ZAT2             --------->ANAC46              ----------->HVH21<---------ARR14(2)          <---------GLK1(1)        ------->GAMYB        <---------MYB52(1)--------->LBD16                --------->YAB1            <---------ALFIN1      <-----------RAV1(1) <-------GAMYB             ------>ZmHOX2a(1)             --------->ZAT2   --------->MYB52(1)    <---------ANAC46      ------>ZmHOX2a(1)                 <---------ALFIN1 ->TOE2(3)    <------NtERF2<---------MYB52(1) <---------ALFIN1                  <---------ALFIN1   gatgctaactgttggcctcacatgtttccgttgaatccgttcttccctcctctcctcaaggatagctgcgctcgtattgtccccaactcccctacacaca  21499100                                --------->AHL20(2)                            <----------DOF2                      ------>ZmHOX2a(2)                    <---------ARR11(3)                    --------->ARR11(3)                <-------GAMYB   <---------AHL20(2)           --------->TOE2(2)               --------->MYB55(2)                            <---------MYB59               --------->MYB111(2)           <---------At4g35610                                  --- ->ANAC46      <---------MYB46(3)       --------->MYB111(1)  --------->TOE2(3)      <-----------RAV1(1) ->ANAC58     <--------P <---------ALFIN1    --------->At4g35610           <---------AHL20(2)     <-- ->ANAC58   <---------MYB46(3) --------->AHL20(2)      --------->YAB1   ----------->GT1           ---   actaagagcaagaatggttgttgatctacacttttaaattagtagttagcttcagagtaataacctaagttttatagttaaattctatgttggcaaaatg  21499200  Previous    Next  AGI:  At5g52970.1    Description:  thylakoid lumen 15.0 kDa protein. Identical to Thylakoid lumenal 15.0 kDa protein 2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9LVV5;GB:Q94AF5); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96655.1) Range:  from: 21496825    to: 21498452    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g52975.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52965.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81453.1) Range:  from: 21498683    to: 21499261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version