Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                     <------MYB46(1)                                             <---     <---------GLK1(2)       --------->ANAC58            <----------DOF2                    <-------- ---------ANAC46             --------->ANAC58           --------->TOE1(3)                --------->AHL20(1) ---------ANAC58             --------->ANAC46           --------->TOE2(3)                <---------ARR11(3) ---------ANAC58     <---------GLK1(2)         ----------->RAV1(1)                       <---------AHL20(1) -----GT1      --------->DEAR3(2)    <------MYB83 ------->GAMYB                          --------->ARR11(3)   tgtcttggaatcttggtacagacgattcttcaagcaatttggtggtattcaacagaaacctttaccccttaaaccatttttctaatggaaatattttctg  21487100                                                                   --------->TOE2(3)                                      <---------ALFIN1       <---------WRKY18(1) <------NtERF2                       --------->ZAT18        --------->WRKY45 ------->ARF1                        <---------ZAT18        --------->WRKY38(1) --------HVH21                  ---------->DOF2             --------->WRKY12<---------MYB52(1) ---GT1  <-----------GT1   <-------TEIL --------->O2     --------->ALFIN1 ----------->GT1   gtcgcccagttttactgaatgttatcaagttcataaaagcccacttctcgttttctaatgtgttgaccacattaatctgttatatttctccaaagttttc  21487200                               ------>NtERF2                              --------->DEAR3(1)                              ----------->HVH21                              --------->RAP2.3(3)                             --------->DEAR3(2)                             --------->RAP2.3(1)                             <------NtERF2                             --------->ATERF1(1)                            <---------ATERF1(1)                            --------->At4g35610                            <---------At4g35610                          <------ZmHOX2a(1)                          --------->ATERF1(1)                                                    <---                         <---------At4g35610                                                     ----                       <-----------RAV1(2)                                                      <----                --------->ANAC58                                                           <---------ANAC58           <----------ID1<---------ATERF1(1)           <---------AHL20(2)                  <---------ANAC58         ---------->DOF2 --------->At4g35610           --------->ATHB12                    --------->ANAC55(2)  --------->ZAT18  <-----------RAV1(2)      --------->TOE2(3)                          <----------DOF2  <---------ZAT18<-----------HVH21      <---------GLK1(2)     ----------->RAV1(2)     --------->TOE2(3) ----------->GT1--------->ANAC58<------NtERF2    <---------ALFIN1                    ----------------   agagggtactaaaaagacaagtcaggcaggagccgacgtttagaatcgtcaacacatttattgggcctgggccttcgcatcgtgtctacctttacgggcc  21487300                                                                              <---------AHL20(2)                                                                              --------->ATHB51                     --------->MYB52(1)                                       --------->AHL20(2)                --------->ANAC58                                       ----------->GT1                --------->ANAC58     --------->ATHB12                  --------->ANAC58          <---------ANAC55(2)  --------->ANAC55(1)                     --------->ANAC58          --------->ANAC58     --------->ANAC55(2)          ========================================= ---NtERF2--------->ANAC58     --------->ANAC46             --------------->AGL15      --------->TOE2(3) ----->LBD16 <---------ARR14(2)--------->ANAC58            <---------YAB1     --------->ATHB12 -----ANAC46 --------->ARR14(2)--------->ANAC58            ----------------->AGL1      --------->TOE1(3) ->AGL1  <---------LBD16     <---------ALFIN1            <-----------GT1     <---------AHL20(2)   gggttttgggacacggataggcaaaacgggcacacgcattgatttgagacaatacatagttaccattttgaacaagaaaattatttgagccttaaatttg  21487400                      <---------ANAC46                 <---------AHL20(2)                 --------->AHL20(2)               ----------->GT1                --------->AHL20(2)             ---------->DOF2                <---------AHL20(2)         --------------->AGL15             --------->ATHB12              ----------->RAV1(1)                --------->At5g28300            <---------YAB1                 <---------------AGL15             ----------->GT1            --------->ICU4                ----------------->AGL2            <---------DEAR3(1)            <---------ATHB12              ----------------->AGL3         --------->ZAT18           <---------TOE2(3)            --------->ANAC58               <---------ZAT18         <---------AHL20(2)             --------->ANAC58               <---------MYB46(3)         --------->AHL20(2)             --------->PCF2 --------->CCA1(1) <---------PCF2         <---- ===========================================================MADS_MADS <---------ANAC46         <-----   gaagttggaaattaatgatttatttagtggagaagagaagagaccccacaaaaggaaatatccaaagacttggtgggcacggtgatacctctgtattaat  21487500                                                 <---------ANAC58                                                 <---------ANAC58                                               --------->ARR11(3)                                               <---------AHL20(2)                                            <---------AHL20(2)                                            <--------ATHB1                                            <---------ICU4                                            --------->ATHB51                                           <---------YAB1                                           --------->ICU4                                    <---------ATHB12 <---------ANAC58                  <---------AHL20(2)                                    --------->AHL20(2)                                --------->AHL20(2)                          ------>MYB46(1)--------->YAB1                          <---------ANAC58                          ------>MYB83--------->YAB1 <---------ANAC58            <---------ANAC46                         *TSS<-----------GT1--------->AHL20(2)                   <---------ANAC55(2) ----------->GT1        <---------MYB59  <---------ICU4                          <---------ANAC58 -----REM1(1)      <---------ARR11(3)--------->AHL20(2)                --------->GLK1(1) ----TOE2(3)       --------->ARR11(3)<---------AHL20(2)       --------->YAB1     --------->ANAC55(2)   gtagggtttttagatggagaagataaccaaattactcaattaataataatttcttgcttcccattaagaacagaaatcgtatttcgtattaattcatgtt  21487600               <------NtERF2              <---------RAP2.6(3)              ------>NtERF2             ------->GAMYB             --------->RAP2.3(2)             --------->RAP2.6(2)             --------->DEAR3(1)             --------->RAP2.3(3)            --------->RAP2.3(1)            --------->ATERF1(1)            --------->ERF1              <------ZmHOX2a(2)           <---------ATERF1(1)         --------->ARR11(3)           --------->ZAT2              <---------ARR11(3)           <---------ZAT2 --------->TOE1(2)           <---------At4g35610     <---------MYB52(1)           --------->At4g35610    <-----------HVH21         <-----------RAV1(2) ----------->HVH21     ----------->RAV1(2)    <---------ANAC58      --------->TOE2(2)<---------CCA1(2)            <---------ANAC58 <---------DEAR3(1)    <---------ANAC58     ----------->RAV1(2)       <---------At4g35610  <---------ANAC58------>ZmHOX2a(1)   gtctctgcgtctcagccgccttgtgaaacctgcgaccgtgagatcatctcttcttctgagtctcactagtagtggcttctcaactacttcctcggtgcaa  21487700                                          ------>ZmHOX2a(2)                                         <---------GLK1(1)                                         --------->GLK1(1)                                         <------ZmHOX2a(2)                                        <-----------ARR10                                        --------->ARR11(3)                                        <---------ARR14(3)                         <---------ALFIN1                                        --------->ARR14(3)                    ------>ZmHOX2a(2)                                        <---------AGP1                       <---------GLK1(1)                                        <---------ARR14(2)                   --------->GLK1(1)                          --------->ARR11(3)  <------NtERF2                  <---------At4g35610                  <---------ALFIN1      <---------ARR11(3)                   <------ZmHOX2a(2)                ------>ZmHOX2a(1)       --------->ARR14(2)                   --------->At4g35610                =================================HOX2a_HOX2a                --------->ARR14(2)                ================================HOX2a_HOX2a                 --------->ARR11(3)               --------->ANAC46    <---------ANAC46               <---------At4g35610 <----------DOF2        <-----------GT1   <---------ARR11(3)<---------LBD16  <---------YAB1 <-----------ARR10     <---------DAG2 --------->ANAC58   <---------CCA1(2)<---------ICU4      <---------ARR11(3)     <----------DOF2--------->ANAC46   <---------ARR14(1)  <---------ICU4   <---------ARR14(2)  ------>ZmHOX2a(1) --------->ANAC58<---------At4g35610<---------YAB1   <---------LBD16   actcctcctttttccatcctccacgctagaccttgtggagcggatctcggcaaactcatcattttgactgctactggggatctcaccactttggataaga  21487800                               --------->ATHB12                               --------->YAB1                               -------->HAHB4                              --------->ICU4                                                      ---                              <---------YAB1                                                     <---                         --------->YAB1                                            <---------ANAC58                  <---------TOE2(3)                                                <---------ANAC58               <---------REM1(1)         --------->At4g35610              ----------->GT1       <----   <---------ALFIN1      ----------->GT1 <---------At4g35610 <----------DOF2  --------->ICU4    -----   cagtgccactcgagttgatgaaggaaatggtaatgataggggcatctcatggctggatagctactttgaaggaagatggaataatgcgtctccaagacga  21487900                                                                                                  ---                                                                                               <-----                                                                                              ------>NtERF2                                                                                          --------->TGA1a             <---------At4g35610                                                          <---------O2             --------->At4g35610                                                          --------->O2        <--------P                     ----------->RAV1(2)                                --------->ANAC46       <-------GAMYB                   <---------At4g35610                                <---------TGA1a    <---------LBD16      ------>ZmHOX2a(2)                                               ------>MYB46(1)  -------->P------->TEIL<------ZmHOX2a(2)      <---------ALFIN1                          ------>MYB83 --->ZmHOX2a(2)        --------->ARR14(2)    ------>NtERF2                             --------->DEAR3(1) ---ZmHOX2a(2)         <---------ARR14(2) <---------ATERF1(1)                         --------->MYB46(3) -----ARR11(3)        <---------At4g35610 ------>NtERF2         --------->ATHB12      <---------MYB52(2) ---->ARR11(3)        --------->At4g35610<---------ATERF1(1)------>NtERF2         <-----------HVH21   tctcaacccggttgcatctgattcagatcccaaacacattcccctgccccctcttgtgactctgcctcattgccaaacccaagttgtcaccaacgtcgcc  21488000  Previous    Next  AGI:  At5g52930.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52940.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174) Range:  from: 21487525    to: 21489087    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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