Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->YAB1                <---------At4g35610            ------>ZmHOX2a(2)           ==============================HOX2a_HOX2a                                        ---------          --------->ARR14(2)                                                               --------->ANAC46          <---------ARR14(2)                                             <---------ALFIN1 <---------At4g35610 -------HSFB2a(2)        <---------ZAT6 <-----------ARR10              ------>ZmHOX2a(1)  --------->LBD16 ------>HSFB2a(2)  <---------At4g35610  <---------ARR11(1)     --------->GLK1(2)          <---------LBD16 ------LBD16=============================HOX2a_HOX2a          <---------GLK1(2)          <---------ANAC46 -----LBD16<------ZmHOX2a(2)      ------>ZmHOX2a(1)         ----------->ARR10 <-------TEIL--------->At4g35610 ->ZmHOX2a(1)--------->At4g35610<---------ICU4     <<<<<<<<<TBF1      --------->ANAC46  <---------LBD16   cgggaagacccagatcgctgcagattactgataatccttccaaatctatcttcttcttcgttgagattctctcctccacatccattttcttccgcggaat  21480400                       --------->YAB1                      <---------ATHB12                               <---------GLK1(1)                  ------------>CBF                                   --------->GLK1(1)                 --------->TOE2(3)                               <---------HSFB2a(2)        <--------               --------->ARR11(3)     <---------RVE1(1)          <---------HSFC1(1)        --------->At4g35610               <---------ARR11(3)    --------->ARR11(3)          --------->HSFB2a(2)       <---------At4g35610              --------->CCA1(1)      <---------GLK1(2)  --------->TOE2(3)         ---------->DOF2              --------->RVE1(1)      <---------ARR11(3)----------->GT1  --------->YAB1     <---------ZAT2     --------->AHL20(2)--------->AHL20(2)         --------->YAB1 --------->HSFC1(1) --------->DAG2 >LBD16   --------->AHL20(2)        <---------RVE1(1)  <---------ANAC55(2)  --------->ARR14(2)   acaaaaatgaaataaaaaatctcaatgaaattaagaagagatttttagcgaatcaaaacgtaaacttcgagaaatcagaattcgaaaaggctcagcttct  21480500                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                               --------->LBD16            --------->ANAC58                                                               ------>NtERF2          <-----------GT1                                                              --------->ANAC58     ----------->GT1      --------->ZAT6         <----------DOF2                  --------->ANAC46   ---------->DOF2     <---------YAB1        <---------ZAT18                    --------->ANAC58------>ZmHOX2a(1)   --------->YAB1   --------->ATHB12                         <---------LBD16 --------->TOE2(3) -GLK1(2)        --------->ANAC55(2)              <---------HSFB2a(2)  ------------>CBF<-------------   ctgtatcatcactaatctcaagtgattagggctcttgtgagcgcgaatagctccagacagtttcccgccatttcgcaatcctcaaaagttacaagtcaaa  21480600                     ------->MYC3                  <---------ALFIN1                                               <---------ANAC58               --------->PCF2                                                    <-------GAMYB              <-----------TCP11(1)                                               <---------ANAC58           --------->CCA1(2)                          --------->TOE1(2) <---------MYB52(1)          <---------ARR14(2)                        --------->DAG2      <------NtERF2          --------->ARR14(2)                       ---------->DOF2     ------>NtERF2             ----        ----------->ARR10               --------->AHL20(2)            --------->DEAR3(1)<---------ANAC46 ----------TaNAC69(2)<-------MYC3       <---------AHL20(2)         --------->ANAC46  <---------ANAC46   ctaaaacaccgagatttggcccacatggtctaaatgggcttataaattggtccaaaagtacgagtttaaacgccgtcgttttgggttgtgtcttattttg  21480700                      <-----------GT1                 <---------AHL20(2)                 --------->AHL20(2)                <---------AHL20(2)                                                                  -                --------->AHL20(2)                                                               ----                <---------AHL20(1)                                                         <---------ARR14(2)             <---------AHL20(2)                                                            --------->ARR14(2)             --------->AHL20(2)               <---------YAB1                             ----------->ARR10            <---------AHL20(1)       --------->ATHB12                                   <---------TOE1(2)            --------->AHL20(2)       <---------ICU4                                    <---------MYB52(1)            <---------AHL20(2)      --------->ICU4                                 ------------------            --------->AHL20(1)      <---------YAB1              *TSS            ------>NtERF2  ------     --------->HSFB2a(2)    <---------MYB111(1)            --------->ANAC58     --------->LBD16------     <---------HSFB2a(2)    <---------MYB111(2)            --------->ANAC58   <---------LBD16  ------ ------>ID1--------->AHL20(2)       <---------ATHB12 <---------------------WRI1--------->ANAC46<-----   tttttttctaaaaattaatttaattttccaactacttaatgatttgtcatgcttcttcgatacgaactaagcacttcttctccgccttcgtaagttccgc  21480800             --------->TOE1(3)          <---------ARR14(2)     <----------DOF2 --------->DOF2                <---------ZAT2 ----->DEAR3(1)     --------->ZAT14 --->WRI1------>MYB83          <---------At4g35610 --->At4g35610      <---------ZAT14                                            <---------GLK1(1) >NtERF2 ------>MYB46(1) <-----------HVH21                                 --------->HSFB2a(2) --->LBD16--------->ARR14(2)   --------->At4g35610       <----------DOF2   <---------HSFB2a(2) ----At4g35610------>ZmHOX2a(1)--------->ZAT2     <---------YAB1           --------->HSFC1(1)    ----   cgaaaagaaccaaatccttcactactctgtctcagctttcgacctctctcttctcattcctttgcaacttctcacttctcgaattccttctcttcaaaat  21480900                                                                                    --------->ANAC58                                                                              ------>ZmHOX2a(2)                                                                             --------->ARR14(1)                                                                             --------->CCA1(2)                                                                            --------->ARR14(2)                                                                            <---------ARR14(2)                                                               ------>ZmHOX2a(2)    --------->GLK1(2)                                                             --------->ARR11(3)     --------->ANAC58                                                             <---------AGP1 <---------ARR11(3)                                                             <---------ARR11(3) <---------HSFB2a(2)                                                             <---------ARR14(2) --------->HSFB2a(2)                                                             --------->ARR14(2) --------->LBD16                    -------->P                             <---------MYB46(3)<------ZmHOX2a(2)               <--------P<-----------HVH21                --------->ALFIN1  --------->AGP1      -----             <---------MYB46(3)                         ------->GAMYB<---------ETT(2)           ----- ----->YAB1 --------->ALFIN1                         --------->MYB52(1)     --------->ARR11(3) ------   cagaaatggctcaagtggttgctaccaggtcaattcaaggctcgatgttatctcccaacggtggatctgtgtctacaagatccgagaagctattgaaacc  21481000                                                                                            =========                                                                                           --------->ARR14(1)                                                                                           ==========                                                                                           <------ZmHOX2a(2)                                                                                           --------->CCA1(2)                           <---------MYB52(2)                                             --------->AGP1                   <---------ANAC58                                                       --------->ARR11(3)                   <---------ANAC58                                                       <---------ARR14(2)                  <-------TEIL--------->ANAC58                            <--------P      --------->ARR14(2)                 --------->ARR11(3)                                       <---------WOX13(1)------>ZmHOX2a(2)               --------->HSFC1(2)                                       <---------MYB46(3)<---------ARR11(3)               --------->HSFB2a(1)                                      ----------->GT1  --------->GLK1(1)           ----------->HVH21  --------->ANAC58                         --------->ALFIN1  <---------GLK1(1) ---->TOE2(2)  <---------HSFC1(2)                                      <---------AtMYB61----------->ARR10 ---->TOE1(2) <---------TOE1(3)           --------->ALFIN1       --------->At4g35610 <-----------HVH21 --->MYB46(3) <---------TOE2(3)  ---------->DOF2              --------->At4g35610   <---------ZAT6   agcgagttttgcagtgaaggttcttggcaacgaagcaaagagaagtggaagagtctctgtaagaagcagaagagtggttgatactactgtgagatccgct  21481100                                                                                    <---------AHL20(2)                                  <---------ARR11(3)                          <---------ANAC58                             ------>ZmHOX2a(1)                                <---------ANAC58                    ------>ZmHOX2a(1)   <---------MYB46(2)                    <---------ANAC46           --------->bZIP60(1)    --------->ARR11(3)                         <-------TEIL         <---------ZAT14   <---------LBD16--------->MYB52(1)              --------->At4g35610         --------->ZAT14   ----------->RAV1(2) ------->TEIL               --------->ZAT2 ==========================HOX2a_HOX2a  <---------MYB59                   <---------ZAT2  <---------LBD16 ==========================HOX2a_HOX2a------->TEIL     <---------At4g35610<---------At4g35610   cgtgttgagactgaagtcattcctgtttctcctgaagatgtgcctaacgtatgtgtaagcttatgttctgtattgaagctgcgttttttatttctgggtt  21481200                                               <------------MYB.PH3(1)                             <-                                             ------->TEIL                                          --                                             <-----------GT1                              --------->At4g35610                                          <---------ANAC55(2)                             <---------ZAT2                                          --------->ANAC55(2)                           --------->ZAT18                                       <---------MYB52(1)                        <----------DOF2-----                <---------TOE2(3)    <---------ANAC58     ----------->GT1      ---------->ID1  <-----          --------->ICU4             <---------ANAC58 --------->WOX13(1)  <----------DOF2 <---------At4g35610   ttgagttttgtagtaattgagatagcatttcaatttgatgcgttatgtaactgtttcaatctgtaaaattgaatttcttttgtctttatgtgagctgatg  21481300  Previous    Next  AGI:  At5g52910.1    Description:  ATIM (TIMELESS). similar to unnamed protein product [Vitis vinifera] (GB:CAO69332.1); similar to Os05g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054915.1); contains InterPro domain Timeless C-terminal (InterPro:IPR007725); contains InterPro domain Timeless protein (InterPro:IPR006906) Range:  from: 21474853    to: 21480385    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g52920.1    Description:  PKP-BETA1/PKP1/PKP2 (PLASTIDIC PYRUVATE KINASE 1); pyruvate kinase. similar to PKP3 (PLASTIDIAL PYRUVATE KINASE 3), pyruvate kinase [Arabidopsis thaliana] (TAIR:AT1G32440.1); similar to hypothetical protein OsI_004358 [Oryza sativa (indica cultivar-group)] (GB:EAY76511.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69333.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81451.1); contains InterPro domain Pyruvate/Phosphoenolpyruvate kinase, catalytic core; (InterPro:IPR015813); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697); contains InterPro domain Pyruvate kinase, C-terminal-like (InterPro:IPR015795 Range:  from: 21480764    to: 21484106    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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