Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------------AGL15                        ----------->GT1          --------->KAN4(2)              --------->DOF5.7(2)         --------->KAN4(1)             <---------ANAC46    <---------ANAC46 -TOE1(3)<---------ICU4            <----------DOF2     <---------ARR11(3) -TOE2(3)<---------KAN4(1)        <----------DOF2      --------->ARR11(3) --------->ANAC46   ttcaaattcgattattccaatctaagaaaaaacttgcctttacgtttacattactaaaatctcgtataaatgaaacacaacattctacatattcaaattt  21450500                                                                                         <---------At4g35610                                          <------MYB83                             --------->ICU4                                          <------MYB46(1)            --------->WOX13(1)  --------->At4g35610                                          ----------->GT1          <------ZmHOX2a(2)<--------HAHB4                                         <---------------AtSPL8   --------->ARR11(3)--------->ATHB51                                        <---------WOX13(1)        <---------ARR11(3)<---------ICU4                             --------->ANAC58         --------->ANAC58             <---------YAB1                    <-------TEIL      --------->ATHB12--------->ANAC58    ------>ZmHOX2a(1)                  --------->ARR14(2) <---------AHL20(2)    --------->AtLEC2      --------->YAB1                  <---------ARR14(2) <---------YAB1 ---------->DOF2==============HOX2a_HOX2a --------          --------->ARR14(2) --------->ANAC58  ---------->DOF2---------->DOF2--------->At4g35610   gtttgcaaattgtatatgcagattcaaactcaagctaatttgattggtacaaagtaaagccattcaaagatcaatcctctgcttcataattagctgaaag  21450600                                   ------->GAMYB                                 -------->P                                                   -------                  <---------AHL20(2)                                                     ---------->DOF2              <----------DOF2   ------->GAMYB                   --------->GLK1(2)     XXXXXXXXXXXXXXX              <---------DAG2   <---------MYB111(2)              <-----------ARR10--------->TOE2(3)     <---------DAG2            <---------MYB111(1)             <---------GLK1(2) --------->TOE1(3)     <----------DOF2           <---------MYB55(2)   ----------->RAV1(1)  XXXXXXXXXXXXXXXXXXXXX>MIR840 -->DOF2   <-----------GT1     --------->MYB46(3)  --------->REM1(1)  <---------REM1(2) --------->AHL20(2)   ttcccaactttattgactttttaatcgattctaacaaccctaagaattcaactacaacatgaacagaatctcaacacagaaaaccctaaattaaagcctc  21450700                                                                                     <------ZmHOX2a(2)                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)                                                                          --------->ARR11(3)                                                      <----------ID1      <---------ARR14(2)                                               <---------HSFB2a(2)        --------->ARR14(2)                                               --------->HSFB2a(2)        <---------ARR11(3)                       <---------At4g35610    <---------LBD16            --------->GLK1(1)              --------->ANAC58     <---------------AtSPL8                <---------GLK1(1)    -------              --------->ANAC46     --------------->AtSPL8    --------->DAG2         <-----------ARR10 -->TOE2(3)   --------->ANAC58     --------------->AtSPL3<----------ID1----------->GT1 ---------->DOF2 XXXXX>MIR829.2        --------->At4g35610   <---------LBD16---------->DOF2 <---------ANAC46<--------   aaaaaactctaaatactcgcaattgagatgaaattttgaagtacttactcgggaagaagacgaaaagcggagagggtatcttggaagatcaaagctttga  21450800                                                                                                    <                                                                                                    -                                                                                            -------->P                                                                                            ------>MYB83                                                    --------->ANAC46                        ------>MYB46(1)                   --------->ANAC58                 --------->ANAC58                       ------>ZmHOX2a(1)     <---------ANAC58                               --------->ANAC58                <---------GLK1(2)     <---------ANAC58                --------->At4g35610    ----------->GT1        <---------HSFC1(2) ---->HVH21        --------->ANAC58  <---------At4g35610   ----------->GT1         --------->HSFC1(2) --DOF2----------->HVH21   <-------TEIL      --------->ATHB12                   ---------->DOF2<-----   catttttgggtgatagagagtaagcaagattcaatatggagcttagttcattgcaagcaaatgggtaaatacgatttttggagaaagcttctcctacctt  21450900                                                   --------->ETT(2)                                        ------------>CBF               <---------ICU4                                       --------->ANAC58                --------->ATHB12                                       --------->ANAC58                --------->YAB1                                       --------->ANAC46          <----------DOF2                                    <------ZmHOX2a(2)  <-----------HVH21<------------CBF                                   --------->ARR11(3) --------->ANAC46 -------->ATHB1                                  --------->At4g35610 <---------O2    <---------ATHB12                                  --------->GLK1(1)--------->DEAR3(1) --------->ICU4                                  <---------GLK1(1)<---------DEAR3(1) <---------YAB1                                  <---------At4g35610 --------->O2  --------->YAB1              -----                             <---------LBD16 --------->YAB1<---------TOE2(3)                  <------ ---------GLK1(2)          <---------LBD16   <---------ICU4<---------TOE1(3)                  <------ -------->ARR11(3)     <----------DOF2*TSS  <---------ATHB12   <-------TEIL          <---------ANAC46 -----DOF2          <-----------GT1<---------ARR11(3) --------->bZIP60(2)         <---------MYB52(1)   tagattttggtatctcttcatttctcttttctggggagatcacacaatcatcgtcgacgtcaaggttctttaatcattgtatcggttttgtgtaatttac  21451000                                      <------MYB83                                      <------MYB46(1)                                      <---------ANAC46                                      ----------->GT1                                     <---------AtMYB61                           <---------AHL20(1)                           <---------AHL20(2)                     ----------->GT1 --------->MYB59                 <---------ARR14(2)  --------->MYB46(2)        <---------ATHB12  --------->YAB1 ---->ANAC55(2)  --------->ARR14(2)  --------->MYB111(1) <----------DOF2 -----GT1      --------->LBD16   <------MYB46(1)      <---------YAB1 ---AHL20(2) <---------LBD16     <------MYB83<---------YAB1      <---------YAB1     ------->TEIL   ttaattccaaatcaaaccggaaccggtataatatttggtttggtataatttttgttattcttttcatatgatttctagttcaaatgtatatgaaaatttc  21451100                     <---------AHL20(2)                     --------->AHL20(2)                  <---------AHL20(1)                  --------->AHL20(1)                <---------AHL20(1)               --------->YAB1             --------->TOE2(3)              <---------YAB1      <----------DOF2            <---------ICU4     --------->AHL20(1)            --------->YAB1     --------->ARR11(3)           <<<<<<<<<ARR2       <---------ARR11(3)           <---------ATHB12    <---------AHL20(1)           <<<<<<<<<ARR1      --------->RVE1(1)                                                    <-         --------->WOX13(1)   --------->CCA1(1)            <---------ICU4                  --------->YAB1    <---------MYB52(2)    --------->AHL20(2) <-----------GT1         --------->ICU4   --------->AHL20(2)    --------->MYB46(3)<---------YAB1<-----------GT1     --------->YAB1     ------->TEIL   <---------YAB1   tatgtaacaaacaatcataatatttttataaaatatctttactacattaactacacattcacaatgacataaatatgaacatataaaaaaaaatcatagt  21451200                                                           --------------->AGL15                                                           <---------------AGL15                                                          <-----------------AGL2                                                          <-----------------AGL3--------->ANAC46        --------->GLK1(2)                                 ----------------->AGL3<---------ANAC55(2)      <---------HSFB2a(1)                                 ----------------->AGL2--------->ANAC58      --------->HSFB2a(1)                          --------->DAG2               --------->ANAC55(1) <---------HSFB2a(2)                              ---------->DOF2               --------->ANAC58 --------->HSFB2a(2)       ---------->DOF2    --------->TOE1(3)                 --------->ANAC55(2)<- --------ANAC46        ---------->DOF2        --------->TOE2(3)           <---------MYB59      <-----   tttgtagaaaattctataaaacacaaaaagaaagagaataagatgaaacctaaaaagttatctaaaaatggaatggcctaacaagtaattgaagactctt  21451300                   <----------DOF2                ------>ZmHOX2a(2)               <------ZmHOX2a(2)               <---------GLK1(1)               --------->GLK1(1)              --------->ARR14(2)              <---------ARR14(2)              --------->ARR11(3)     <---------ANAC46         <---------ARR11(3)           --------->LBD16         <---------ANAC58           <---------ARR14(2)         <---------LBD16           <---------ANAC46    --------->ANAC46                       <------      --------->CCA1(2)     <---------AHL20(2)--------->ANAC58--------->ARR14(2)              ------- ---------DOF2<---------ARR11(3)   <---------ANAC58  --------->ANAC46          ---------->DOF2<------ -----DOF2<---------LBD16   --------->AHL20(2)--------->ANAC58--------->ARR11(3)            ---------   tctttgtgatatgcgggatctctttgttatatatatatcgtgtgcatcaagaaacacacatcaatatctgtttgcaattttcaaaggaagtaagtgagct  21451400  Previous    Next  AGI:  At5g52880.1    Description:  F-box family protein. Identical to F-box protein At5g52880 [Arabidopsis Thaliana] (GB:Q9FLX3); similar to unnamed protein product [Vitis vinifera] (GB:CAO49540.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 21449062    to: 21450938    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g52882.1    Description:  ATP binding / nucleoside-triphosphatase/ nucleotide binding. similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G28000.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G64110.3); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G64110.1); similar to hypothetical protein OsI_000945 [Oryza sativa (indica cultivar-group)] (GB:EAY73098.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73743.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65885.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Range:  from: 21451105    to: 21455885    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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