Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------ANAC46                                                                   <---------ANAC58  --------->At4g35610                                     --------->AHL20(2)  <---------At4g35610                                     <---------AHL20(1)   ----------->RAV1(1) ------>ANAC58                 --------->YAB1             <---------AHL20(2)   ------->GAMYB ------>ANAC46          <---------ZAT14        ------->TEIL        <---------ANAC58 ------>ANAC58          <---------ZAT18<---------ANAC58   --------->AHL20(1)   --------->TOE2(3) >DOF5.7(2)             --------->ZAT14<---------ANAC58--------->YAB1         --------->MYB46(3)   --   tcgcatctgattttgtatgtaaacagtgttctctaatagtggcttcatgaatctctctaataaaatatgacttgttgacaaccacaaaaaatggcattgt  21418200                                                                                                    <       <------ZmHOX2a(2)                                                                            -      --------->AGP1                                                                  <---------ANAC55(2)    --------->MYB59                                         <------ZmHOX2a(2)         --------->ANAC55(2) ------->ICU4                                  <----------DOF2                       <-------TEIL <--   gctaattagatccaatccaactatctaagtatacatatcactgacttatctttttttttgggatcaaaatcactgaattatctaaaatacatatttttgg  21418300                                                                                                 <---                                                                                                 ====                                                                                                <----                                                                                            <-------PIF5                                                                                            ------->PIF5                                                                                            <-------MYC3                                                                                            ------->MYC2                                                                                            ------->MYC3                                                                                            <-------MYC2                                                                                           <---------ANAC58                                                                                     ---------->DOF2                                                                                     ================                                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                  <---------MYB46(3)                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                             xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           --------->At4g35610  <----                                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                      *TSS <---------At4g35610  <----                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                   ---------->DOF2                    xxxxxxxxxxxxxxxx>smallRNA(i)             ------>MYB46(1)  <---------ARR14(2)    --------->WOX13(1)xxxxxxxxxxxxxxxx>smallRNA(s)           <---------MYB59 <---------ANAC46       <---------ATHB12    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------YAB1           <---------ANAC58     --------->WOX13(1)    xxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---------AHL20(2)     <-----------RAV1(2)    <---------ATHB12       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -------->AHL20(2)---------->DOF2<---------AHL20(2)--------->AHL20(2)<---------RAP2.6(3)   <---------ANAC58 ---------TBP------>MYB83  <---------ANAC58   ------------>CBF      --------->RAP2.6(2)    --------->ALFIN1   atttatatttgaaccaaacaaaaagacaggcgtatataaaagagactaatcaatcaattagtcatcgaagccgtcttagctcagtggtagagcgcgtggc  21418400                 <---------PCF2                xxxxxxxxxxxxxxxx>smallRNA(s)                <---------DEAR3(2)                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ALFIN1              <---------MYB52(1)          xxxxxxxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxx>smallRNA(le3)        --------->ALFIN1        ----------->HVH21        xxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxx>smallRNA(s)       ------->MYC2       <-------MYC2       ------->MYC3       <-------PIF5       ------->MYC4       <-------MYC3       ------->PIF5       >>>>>>>>>>AtbZIP1       <-------MYC4 xxxxxxxxxxxxxxxx>smallRNA(s)      --------->PIF3(3)      xxxxxxxxxxxxxxxx>smallRNA(s)      <---------PIF3(3)      --------->O2 xxxxxxxxxxxxxxxx>smallRNA(s)      <---------TGA1a      ----------->RAV1(1)      <---------O2xxxxxxxxxxxxxxxx>smallRNA(s)      <---------bZIP60(2) xxxxxxxxxxxxxxx>smallRNA(se3)      --------->TGA1a  <------ZmHOX2a(2)          <---------AHL20(2)      --------->ANAC46 xxxxxxxxxxxxxxxx>smallRNA(s)   --------->MYB46(3) --------->ARR14(2)         --------->AHL20(2)   ---------------->PIF3(2)<---------ALFIN1  <---------AHL20(2) <-----------GT1xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------DOF2 xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     ---------->ID1 ===============bZIP_DOFxxxxxxxxxxxxxxxx>smallRNA(i)                                <----------DOF2 -----ANAC46<---------ANAC46              ----------->GT1                     --------->ARR14(2)    - ===============bZIP_DOFxxxxxxxxxxxxxxxx>smallRNA(s)           <----------DOF2<---------ARR14(2)    < -----ANAC58<---------ANAC58       <------NtERF2 <---------AHL20(2)        ------------>CBF     ----- -----ANAC58<---------ANAC58     <---------DEAR3(1)  <---------YAB1       ------>NtERF2   ------>NtERF2   ttttaaccacgtggccgtgggttcgatccccacagacggcgaagtagttaattttatatttgatgcttttttttggggccaatcgggttttcggcccatt  21418500               <------ZmHOX2a(1)         ----------->HVH21                            <---------GLK1(2)        <------NtERF2                      ------>MYB46(1)        --------->At5g28300                ------>MYB83                                           ---      <---------DREB2C(2)                <---------MYB59   <<<<<<<<<TBF1                     --------      <---------DEAR3(1)       --------->ANAC58      --------->At4g35610                   --------->LBD16 ---------->DOF2               --------->ANAC58      <---------ZAT2                       --------->ANAC58 -------->AHL20(2)            --------->DAG2         <---------At4g35610                  --------->ANAC58 ---------AHL20(2)    <----------ID1    ----------------->AGL1                         <---------ARR14(2) ---->AHL20(2)----------->GT1---------->DOF2<------------CBF               *TSS        --------->ARR14(2)   aattaaaggcggtgataggaaaaaaaaacaaaaaagcaaatgacctaattgagtcagcttcttcttccctcttctctcttcacttagaagaaccgcaaag  21418600                                                            <-------TEIL                                                       <---------WOX13(1)                                                     --------->ATHB12                               <                                              --------->WRKY38(1)                             -------    <---------MYB59                           --------->WRKY12                           <-------GAMYB  --------->ARR11(3)                    --------->DEAR3(1) --------->CCA1(2)      <---------bZIP60(2)  <---------ARR11(3)           <---------At4g35610  --------->ICU4                <---------ANAC46  - ------->DOF2          <----------DOF2  <---------DEAR3(1)<---------ARR14(2)    --------->ZAT14     < -->DOF2    --------->ANAC46  <-----------ARR10     <---------YAB1              <---------ZAT14------   aaaagaccttattcacacaggtcgtctttgcgaagctcatcgtcgacgatgaccatgatggatacagacgaagggaagacagtgatgtgtctgttaacag  21418700                                                                                                 <---                                                                                                 ----                                               <------MYB83                                      ----                                               <------MYB46(1)                                   <---                                --------->KAN4(2)   <----------DOF2                             <---- -----------RAV1(2)           ------->TEIL--------->DAG2           <---------ZAT2    ----------->HVH21 -->MYB46(3)    <---------TOE2(3)   --------->TOE2(3)              --------->ZAT2  <---------ANAC58 -------->HSFB2a(2)<---------ARR14(2)   ---------->DOF2            --------->At4g35610          ----- ---------HSFB2a(2)--------->ARR14(2)------>ZmHOX2a(1)             <---------At4g35610          <---- ->GAMYB        --------->MYB59<----------TaMYB80   ------>ZmHOX2a(1)              <---------ANAC58   acccagaaggaactcatttaggttctgccatgtatattcctcaaaaggctggtcctttgcaacttactcagctcgtcaataggttccttgacaacgtaat  21418800                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                    <------ZmHOX2a(1) ------>NtERF2 -----HAHB4                                                       <---------TOE2(3)  --------->ANAC58 ----->ATHB12                                                 --------->At4g35610    --------->ANAC58 ----->YAB1                                                   <---------At4g35610   --------->RAP2.6(3) ------ICU4                                                 <--------P--------->GLK1(1) -----ATHB12      <-----------GT1                ---------->ID1<---------ANAC58   ----------->HVH21 ---->ICU4       <-----------GT1   ---------->DOF2----------------->AGL1        --------->YAB1     <- -----YAB1   <----------DOF2 <-------TEIL       <-----------GT1<---------ANAC58 <---------ICU4    <--   catttcttctctcttctttttaactcttaagttcgtttaaagaattgatttttcgtttttgggtagcttaggatttgcagaaacatgacgcctctgtgta  21418900              <------ZmHOX2a(1)           <---------LBD16 <---------MYB59      <---------ARR11(3)   --------->TOE2(3)      --------->ARR11(3)   --------->TOE1(3)                                  ------->TEIL      <---------AHL20(1)<-----------GT1                                    --------->ANAC58 <---------WOX13(1) --------->ARR11(3)                                     --------->ANAC58 --------- <--------P<-----------RAV1(2)                        <---------ARR11(3)   --------->HSFB2a(1) --------MYB46(3)   <---------ARR11(3)                --------->ARR11(3)  --------------->AtSPL3 -------AtMYB61  <------ZmHOX2a(1)         ------->TEIL    <---------ANAC46<---------HSFB2a(1) ------   ttggttgatatattcaggaggagatgttaccttacagtttctatgtatcagacgaagagcttcttgtaccagttggaacgtacttggagaaaaacaaagg  21419000                                           <---------ANAC46                                        <---------ANAC46                                 <-------GAMYB                                <---------MYB46(3)                   <---------TOE2(3)                               --------->ALFIN1                    <---------AHL20(2)                               <---------AtMYB61                  --------->AHL20(2)                              --------->ZAT14               <---------ARR11(3)                             --------->ALFIN1               --------->GLK1(2) ->DOF2               ---------->DOF2<---------AtMYB61      --------->ARR11(3)         <---------ZAT18 ----->GT1          <----------DOF2<---------MYB46(3)   --------->YAB1<-----------RAV1(1)          <-   caaaaaaaaaaaaaaaaactctctttaagcagtgtggttgtggtgtcttatggctctatgaaaatctaataaatgttgttgcaaaattgtgcatttcagt  21419100  Previous    Next  AGI:  At5g52815.1    Description:  pre-tRNA. tRNA-Lys (anticodon: TTT) Range:  from: 21418370    to: 21418441    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g52820.1    Description:  WD-40 repeat family protein / notchless protein, putative. Identical to Notchless protein homolog (NLE1) [Arabidopsis Thaliana] (GB:Q9FLX9); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to hypothetical protein OsJ_033138 [Oryza sativa (japonica cultivar-group)] (GB:EAZ18929.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40786.1); similar to notchless-like protein [Solanum chacoense] (GB:AAR88094.1); contains InterPro domain WD40 repeat-like (Inter Range:  from: 21418575    to: 21421611    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version