Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------RVE1(1)                                         --------->ANAC58                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                         <---------ANAC55(2)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         --------->ANAC55(2)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         --------->ANAC58              <XXXXXXXXXXXXXXXXXXXXMIR870           <---------YAB1                --------->ANAC46            <------ZmHOX2a(2) ------ARR14(2)                   --------->ANAC58                  --------->AGP1 ------>MYB46(1) ----->ARR14(2)                   --------->ANAC58                  <---------ARR14(2) ---->GLK1(1)             --------->TOE1(2)   <---------CCA1(1)     --------->ARR14(2)       <------- -----GLK1(1)   --------->CCA1(2) --------->ANAC46            ------->TEIL         ------>MYB83   atctgcccttgttatgagatttgacataccttggactcgcaatacgcgatattttgcgaagacgaacccagatcgaagaaacaccaaattagattgtgtt  21412800                                                                                             <-------                                                                                             --------                                                                                    <---------TGA1a                                                                                    <---------At4g35610                                                                                    ----------->RAV1(2)                                                                                    --------->At4g35610                                                                                 --------->WRKY12                                                                                 ----------->HVH21                                                                                 --------->WRKY38(1)                                                                                <-----------HVH21<---                                                                              --------->LBD16<------NtERF2                                                                             <---------LBD16---------                                                                            <---------LBD16 ---------                                                                        ======================bZIP_DOF                                   XXXXXXXXXXXXXXXXXXXX>MIR870     ===========================bZIP_DOF                      <---------AtLEC2                  ----------->GT1 <----------DOF2     ---------        <------ZmHOX2a(1)       <---------YAB1     <---------ETT(2)---------->DOF2  ================= ----RAV1(1)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   *TSS  --------->AHL20(2)--------->LBD16   ----   gcaaatgttaggagtctaagttttgcatcacattctaatttgatgttcttcgatcgaccagaaaaaaataaaagcttttcccggtgacctgagccagcaa  21412900     <---------MYB52(1)    <-------GAMYB                                       <---------MYB52(1) --ZAT2                                                <---------SPL7 ->ZAT2                                               <---------ANAC58     --------->DAG2 ------O2                                             <---------ANAC46    ---------->DOF2 >ANAC46                                      --------->YAB1           --------->ANAC58       ------- >ANAC58          --------->At4g35610        --------->KAN4(1)     --------->ANAC58  <------NtERF2--- >ANAC58          <---------At4g35610<----------DOF2  <---------ANAC58 --------->ANAC58       ------- ===========MYC_MYB          ------>MYB46(1) <---------KAN4(1)     --------->ANAC58--------->ANAC46 < ----->O2      <<<<<<<<<TBF1 ------>MYB83   <---------KAN4(2)    ---------->DOF2  --------->RAP2.6(3)   cgtctccgttaatcttcttcttctgaagaccaaatgtttctttacgaataatcgtgtcgttcgtctctaaagcaagaaaagttagacggcaagtagaagc  21413000                                                                    <-------GAMYB                                                                   <---------MYB46(3)                                                                  --------->ALFIN1                                                                 ----------------------->TaNAC69(2)                                                                 <-------MYC4                                                                 <-------PIF5                                                                 ------->MYC4                                                                 ------->PIF5                                                                 ------->MYC3                                                                 ------->MYC2                                                                 <-------MYC2         <---------ZAT14                                         <-------MYC3         --------->ZAT14                                        <---------ANAC55(2)     --------->ANAC58                                           --------->TGA1a                     -     --------->ANAC58                                           --------->ANAC55(2)            <-----     --------->ANAC46                                           ============MYC_MYB            <-----   --------->MYB52(1)                                           <---------TGA1a               -------   <-----------GT1                                              <---------O2                  ------- --------->AHL20(2)                    <------ZmHOX2a(1)        --------->O2              <---------ANAC58 <---------AHL20(2)          --------->YAB1                    ------------>OsbHLH66      <---------ANAC58 -->ANAC58                   <---------ICU4                   <---------ALFIN1           <---------TOE2(3) ------>WOX13(1)            --------->ICU4             ===================bZIP_DOF      <---------DOF5.7(2) -->ANAC58<---------ALFIN1  <---------ATHB12           <---------DAG2                 <---------MYB52(1) ---------ATHB12          --------->YAB1               <----------DOF2  <---------YAB1--------->DOF5.7(2)   caattaaacggcacactgttttaatctctaatcatcaaacaggaggtagtagtaatacttttcgacacgtggttgtgattacgactccgtttacgtttga  21413100  --------->WRKY12  --------->WRKY38(1)  ----------->HVH21 -------->At4g35610 ----WRKY18(1)     <---------AHL20(2)          --------->ANAC46   <---------YAB1 ------GT1  <-------GAMYB           ----------->GT1     ------------>CBF -->WRKY38(1)<---------MYB52(1)    ----------->GT1   <---------DAG2 ---->HVH21<---------MYB46(3)  <---------WRKY38(1)   <----------DOF2  *TSS                          <   ccagttgacctcgtcgttgatttttttttttggtgaacgggaaaaaaaaacacaacttttcaatttttctgattccaaaaatttcaaatcccatcgaagg  21413200        --------->DAG2                   --------->ZAT14       ---------->DOF2                   --------->ZAT18   <----------ID1                        <---------ZAT14   --------->ANAC58                   --------->YAB1     >>>>>>>>>TBF1   --------->ANAC58              --------->AHL20(2)<------ZmHOX2a(1) ---------ARR14(2)         <-----------GT1 <---------ZAT14        ----------->GT1   gggaaacgaaaaagtctcacttagaattgtcacaattcaatagtgaacagtgaggagaagaagaagactggagaaaaaatgtcgaagaaacttagctcga  21413300                                                     ----------->RAV1(2)                                                    ------>NtERF2                                                   --------->ANAC46                                                  <---------LBD16              <---------------AGL15                                                <-----------GT1                --------------->AGL15                                             --------->GLK1(1)                <-----------------AGL3                                             <---------GLK1(1)                =======================                                        --------->ALFIN1                      ----------------->AGL2                                      --------->ALFIN1                        ----------------->AGL3<                                      <-----------RAV1(1)          <-----------GT1 --------->YAB1 <--                 ------>ZmHOX2a(2)    ===========================RAV <-----------GT1       --------->YAB1   actccatggatgatgttgatcgattgtttcagtgtttcaagtgtgggatttctccgcctggtgagcatttttcactctcttccattaatagaatcatgtt  21413400                          <----------DOF2                          <---------------AGL15                          --------------->AGL15                         <---------ANAC58               --------->ANAC58   <---------WOX13(1)    <---------ANAC46               --------->ANAC46 --------->ATHB12        <---------ANAC58               --------->ANAC58                --------->REM1(1) =========================================MADS_MADS   --------->MYB52(1)              <---------HSFB2a(2) ---------YAB1      --------->ATHB12                  <---------DOF5.7(2)    <---------TOE1(2) <----- -------ANAC46     <-------TEIL                     --------->DOF5.7(2) ------->TEIL  --------->HSFB2a(2)   ctgtgattgctcgaatagagattcattgcttttagtagtggaatttggaatttagttaacgcaattgacaattgaatcttatgttcttctacaacaagac  21413500        ------>ZmHOX2a(2)       <------ZmHOX2a(2)                         <---------LBD16       --------->GLK1(1)                     --------->GLK1(2)          <---------YAB1       --------       <---------GLK1(1)                   <---------YAB1      <---------GLK1(2)             --------      --------->ARR11(3)                  --------->AHL20(2)  --------->At4g35610   --------->MYB52(1)      <---------ARR11(3)                 --------->YAB1       <---------At4g35610  --------->ARR11(1) ----ARR11(3)                           --------->ICU4    <-----------GT1      ---------->DOF2   ctgtttgagatctctgtgaaatatttcaacttctgctatgaaattataatctgtggaatttttcagcttctgctatgagagaaaagaaacggagcaagaa  21413600                                                                           ------------------------>ANAC81                                                                           --------->DAG2                                                      <----------DOF2     ---------->DOF2                             <---------ANAC46      <---------ARR11(3)--------->HSFB2a(2)                             <---------bZIP60(2)   --------->ARR11(3)<---------HSFB2a(2)                          ----------->HVH21  --------->ZAT2         <---------LBD16            <-----                         <-----------HVH21   --------->At4g35610  --------->ARR11(3)    <---------GLK1(1) ->ANAC58               ------>ZmHOX2a(1)    <---------ZAT2    <---------GLK1(2)<------ZmHOX2a(1)---- ->ANAC58             ----------->RAV1(2)    <---------At4g35610  --------->GLK1(2)---------->DOF2   aatgttgaattcagagtatgactctcctgtgacctgtaagaagttgcagctaagttctttgtctagattatctggaaaaagaggagaaagaaatcagatt  21413700  Previous    Next  AGI:  At5g52797.1    Description:  MIR870a; miRNA Range:  from: 21412771    to: 21412855    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g52800.1    Description:  DNA primase. similar to unnamed protein product [Vitis vinifera] (GB:CAO49507.1); contains InterPro domain DNA primase, UL52/UL70 type, Herpesviridae; (InterPro:IPR004340) Range:  from: 21413170    to: 21416106    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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