Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ------MYB83 ------MYB46(1) ------->ALFIN1 ------>ALFIN1       <---------ANAC58             --------->ANAC58 ------P     --------->MYB52(1)                   --------->ANAC58      --------->YAB1    --------->YAB1 --MYB83    <---------WRKY12       <---------GLK1(1)                   <---------YAB1     <---------ICU4 -----MYB46(3)       <---------ANAC58   ------>ZmHOX2a(1)            --------->YAB1   <---------YAB1 --MYB46(1)<------ZmHOX2a(2) --------->ATHB12   ---------->DOF2<---------HSFB2a(2)  --------->YAB1 ----TOE1(2)<---------WRKY38(1)    --------->GLK1(1)           --------->HSFB2a(2) <---------YAB1 --P       ====================================HOX2a_HOX2a  ------>ZmHOX2a(1)   --------->TOE1(2)   gttggggacatcgatcaacggatgcttagcaagattgaaatccttcttcgcaaagcaaactccttctgcaaaaatcatagaacatatgataatcaacaca  21373900                                 <---------------AGL15                                 --------------->AGL15                          <---------WOX13(1)                        --------->ATHB51                        --------->ATHB12                        <---------ICU4                       <---------YAB1                       --------->ICU4                     --------->YAB1            --------->TOE1(3)                    <---------YAB1             --------->TOE2(3)                  --------->YAB1 --------->TOE1(3)           --------->ANAC46      --------->YAB1<---------MYB59           <-------TEIL           --------->ANAC58     ----------------->AGL2                 --------->YAB1           --------->ANAC58     ----------------->AGL3           --------->YAB1  <-----------GT1<---------ATHB12--------->TOE2(3)            --------->YAB1                     ----   atgttcaccttctaagccaaacatcataattgctaccataactagttaacctaaactagttcaaaaatcacaatgttcatcggcataagcctaaaaatga  21374000                                 ------>ZmHOX2a(2)                                --------->CCA1(2)                                <------ZmHOX2a(2)                                           <--------                               >>>>>>>>>GATA-1                                             <-------GAMYB                               >>>>>>>>>GATA-3                                          <---------LBD16                               >>>>>>>>>GATA-4                                   <---------GLK1(1)                               --------->AGP1                                    --------->GLK1(1)                               <---------ARR11(3)                        <---------ANAC58<---------RAP2.6(2)                               >>>>>>>>>GATA-2             <---------HSFB2a(1)  <---------ARR14(2)               --------->At4g35610                         --------->HSFB2a(1)  --------->ARR14(2)               <---------At4g35610           --------->AHL20(2)     --------------->AtSPL3<---------MYB46(3)    <-----------GT1           --------->GLK1(1)           ------->TEIL  <-------TEIL <----------DOF2 --->TEIL     --------->GLK1(2)--------->ARR11(3)      <---------MYB52(2)<---------ANAC58<---------ANAC46   atcaatttactcacagaagctgaagaaaacagagatctaagaacaaatttaagaagaacgaacctttgaagaggtacttgcagatttctttgcggttagc  21374100                                                                                 <---------YAB1                                                                              <---------YAB1                                                                           --------->ARR14(2)                                                 ------->GAMYB             --------->GLK1(2)                                                --------->ANAC46      --------->LBD16                                                --------->ANAC58    <---------LBD16       --------->GLK1(2)           ----------->GT1        --------->GLK1(2)<---------ARR14(2)      <- -MYB52(1)                 >>>>>>>>>TBF1        --------->ANAC58   --------->MYB52(1)   ----------->GT1   ctctgagataatctgagagcaagaaggaagaagaaaatggtcaaaattcaacgaaacaacattctgagacaccggagaatatgatgagaatagagaaata  21374200                                              <---------ANAC58                                          ------>ZmHOX2a(2)                                         <------ZmHOX2a(2)               <---------HSFB2a(2)                                        --------->ARR11(3)          <---------HSFB2a(1)                                        <---------ARR14(3)          <---------HSFC1(2)                                        <---------ARR14(2)          --------->HSFB2a(1)                                        --------->ARR14(2)          --------->HSFC1(2)                                        --------->ARR14(3)      --------->ANAC58                                        --------->AGP1          --------->ANAC55(2)               <---------ANAC46         <---------ARR11(3)      --------->ANAC46               <---------ANAC58        <---------GLK1(1)        --------->ANAC58               <---------ANAC58        --------->GLK1(1)        --------->ANAC55(1)           <---------ANAC58          <------ZmHOX2a(1)       <---------SPL7           <---------ANAC58       <--------P  <---------ANAC58 <---------LBD16----------->GT1         --------->ARR11(3)      <---------MYB52(1)<---------At4g35610   --------->HSFB2a(2)  ---------->DOF2     <---------YAB1<------MYB46(1)--------->ZAT2  <---------ARR14(2)               < -----ZmHOX2a(2)    <-----------GT1 <------MYB83   <---------ZAT2  --------->ARR14(2)     <---------TOE2(3)   gatcaaaagcagagcttgtgtgttaccattgtatcggtaggagatcttgctcgagcagagagtcgcacggaacttcgagagagcaaaaaactagggtttt  21374300                                                          <---------AHL20(2)                               *TSS                      --------->AHL20(2)           <---------ANAC46  <------ZmHOX2a(1)           <----------DOF2        <-------TEIL                   <---------ARR14(2) ---------TOE1(2)    <----------DOF2          --------->YAB1        <----------DOF2 --------->ARR14(2)   cgcaggactagagaagacgatgactttatatgctttgttttgggcctataatgagttcattaaatatgggccttaagtttgggcagtatcggagactgag  21374400                                                                                   --------->MYB46(3)                                                                                 <<<<<<<<<GT-1                                                                                 <-----------GT1                                                                            --------->AHL20(2)                                                         --------->YAB1     --------->AHL20(1)                                                 --------->ATHB51           <---------AHL20(1)                                                 --------->ATHB12           <---------AHL20(2)                                                <---------AHL20(2)       <---------AHL20(2)                   <------------CBF<---------ANAC46     <---------YAB1   --------->AHL20(2)               ---------->ID1     <---------LBD16<---------AHL20(2)      --------->AHL20(1)           ------>ZmHOX2a(2)     --------->ALFIN1--------->AHL20(2)      <---------AHL20(1)         --------->ARR11(3)    <------------CBF <---------AHL20(1)   <---------AHL20(2)      --------         <---------ARR11(3) <---------TOE2(3)   --------->AHL20(2)  --------->AHL20(2)  <---------ICU4   aaactcaaaatgatcttgtcgaattgaattaagaattgggggtttatcaaattatttgatgataactatatttaatattttattaaccaatacttacact  21374500                       <-----------GT1                                               <-----------GT1                  <---------MYB46(3)                                            <---------AHL20(2)              <---------YAB1                        ----------->GT1           <---------ICU4             <---------TOE2(3)                  <---------ARR11(3)        --------->AHL20(2)      <---------AHL20(2)                 ----------->GT1       ----------->HVH21<---------YAB1      --------->AHL20(2)       <----------DOF2  --------->ARR11(3)     ----------->GT1        <------ ->ZAT6     <-----------GT1------>ZmHOX2a(1)   <---------CCA1(2)     <-------TEIL--------->AHL20(2)   cgttgtatttatatttacgatggtttatcctctcttttttgaaaagtttatatcttgtaaattttgtgacatacgtttaaatattatttactataacttt  21374600                                                                                           <---------ANAC55(2)                                            <-----------GT1                           <---------ICU4                                          <---------AHL20(2)                         --------->AHL20(2)                                     <---------AHL20(1)                          <---------YAB1                                     --------->AHL20(1)                          <---------AHL20(2)--                                  --------->AHL20(2) ----------->GT1            <---------AHL20(2) <-                                <---------DAG2    <---------GLK1(2)           <---------AHL20(2) <---                         <---------YAB1 <---------AHL20(2)             <---------TOE2(3) --------->AHL20(2) <---------AHL20(2)    <----------DOF2<---------AHL20(2)<---------AHL20(2)  <---------AHL20(2)------- ----DOF2     <-----------GT1   <----------DOF2--------->YAB1    --------->AHL20(2)  <---------AHL20(2)   gattttttttttttttttactataactttgattactttatatatttttatcagattagttaattctataaattaacatatatttttattaattacatata  21374700                                       --------------->AGL15                                <---------AHL20(2)                                --------->AHL20(2)                            <---------AHL20(2)                           --------->AHL20(2)            --------->AHL20(2) --------->AHL20(1)           <---------AHL20(2)  <---------AHL20(1)           --------->AHL20(2)  --------->AHL20(2)         --------->GLK1(2)          <---------AHL20(1)--------->AHL20(2)            <---------ARR11(3)         --------->YAB1--------->AHL20(2)                 --------->ARR11(3)       --------->AHL20(2)  <---------AHL20(1)            --------->CCA1(1)   ----------->GT1     <---------AHL20(2)                --------->RVE1(1) ------->ARR11(3) =====================================MADS_MADS --------ARR11(3) --------------->AGL15<---------------AGL15 ------AHL20(2)<-----------GT1 <---------AHL20(2)      --------->AHL20(2)           <-----------RAV1(1) -->AHL20(1)<---------ICU4 <---------AHL20(2) ----------->GT1                ------->TEIL   ttatcttgttaaaataatttccagtttaattaatttatttgctccatattgtaacaaaaaaatctttgagagataaatgtatttttgtgttgtttcaaca  21374800  Previous    Next  AGI:  At5g52650.1    Description:  40S ribosomal protein S10 (RPS10C). Identical to 40S ribosomal protein S10-3 (RPS10C) [Arabidopsis Thaliana] (GB:Q9LTF2;GB:Q8VZ66); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.2); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55398.1); contains InterPro domain Plectin/S10, N-terminal (InterPro:IPR005326) Range:  from: 21372781    to: 21374331    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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