Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ARR11(3)          <---------ARR11(3)         --------->YAB1    <---------ANAC58    <---------ANAC58    <---------ANAC46 -------MYC3 ------>MYC4 -------PIF5 ------->ABF1 -------MYC4 ------>PIF5 ------>MYC2 -------MYC2 ------>MYC3 --------ANAC55(2) --------bZIP60(2) ------->ANAC55(2) --------O2 ------->TGA1a ------->O2 --------TGA1a ------ALFIN1 ---->HVH21 ------>ZmHOX2a(2)<---------MYB52(1)                    ---------->DOF2 -->DREB2C(2) ------>ZmHOX2a(1)                              ----------->GT1     --------->MYB52(1) - -->At1g77200--------------------->WRI1                     ----------->GT1     ---------->DOF2     - ->DEAR3(2)<---------YAB1   --------->LBD16          --------->ANAC46     ----------->GT1     ------- >HVH21 <---------ATHB12  <---------LBD16----------->GT1---------->DOF2---------->DOF2        -------   cacgtggcctatgatcctagtgagattagccggtaatcttgtgaagtaaaattacacaaaaagagttaaaaaagaaaggaaacaaagggcatccacaagc  21323900                           ------>MYB46(1)          <---------AHL20(1)                           --------->ZAT14          --------->AHL20(1)                           <---------ZAT14                             --     ----------->GT1       ------>MYB83               <---------ALFIN1      ------->GAMYB        ==== --------->MYB46(3)      <---------MYB59             --------->ANAC46 <---------ANAC55(2)        ---- -------->ANAC58         --------->AtMYB61         --------->ANAC46   --------->ANAC55(2)       ----- -------->ANAC58   ---------->DOF2                <-------TEIL       <---------TOE2(3)          ----- -->ANAC58--------->ARR11(3)                  <-------TEIL          <-----------GT1   --------->YAB1 -->ANAC58<---------ARR11(3)              <-------TEIL--------->AtMYB61  --------->MYB52(1)     -----   ccaagcactgaaaatatttggaaaagaccaaactcaaactcagttacatacatacaccacacagagtttataacgtaacagactgtgatcacaatccaac  21324000                            <---------ANAC58                            <---------ANAC46                            <---------ANAC58                        <-------MYC4                        ------->MYC4           --------------->AGL15           <---------------AGL15          ----------------->AGL1  --------->YAB1          ----------------->AGL3  <---------ICU4       ==========================bZIP_DOF       <----------DOF2  -------->ABF1      ------>ZmHOX2a(2) ------->MYC3     <------ZmHOX2a(2)  ------->MYC2    <-----------ARR10   <-------MYC3    <---------AGP1      <-------MYC2    <---------ARR14(2) <--------ABF1    --------->ARR11(3) <---------O2    <---------ARR11(3) --------->O2    --------->ARR14(2) <---------TGA1a    --------->AGP1     --------->TGA1a   <---------CCA1(2)   --------->ANAC55(2) --------->RAV1(1)     <---------ANAC55(2) ================================MYC_MYB        <---------ANAC58 --->GAMYB----------------->AGL2 <---------ATHB12     ----------->HVH21                            <- ---->ANAC58      ------->GAMYB  <---------YAB1 <---------ANAC58                                  --- ---->ANAC46      ===============MYC_MYB        <---------ANAC55(2)          --------->MYB52(1)  <--- ---->ANAC58   --------->MYB52(1)--------->ICU4 <---------ANAC46      <-------GAMYB     ------->TEIL   gccacagatctttccattaacagacacgtgtcgtaatcatagctcaagtttcgtaaatgacagaaaacattcggttagaaaacggtgatgaaactattgc  21324100                                                                                           --------->ARR11(3)                                                                                           <---------ARR11(3)                                                                                           <---------                    --------->ALFIN1                                                      --------->CCA1(1)                  <---------At4g35610               <---------MYB52(1)                    --------->RVE1(1)                <-----------RAV1(2)               --------->DEAR3(1)           --------->TOE2(3)       --------->ANAC58                        <---------ALFIN1               ----------->GT1       --------->ANAC58                       ------>ZmHOX2a(1)               <---------ANAC55(2)       --------->ANAC46                   ------->TEIL                       <---------TOE2(3)     <- -----NtERF2<---------At4g35610           --------->ARR14(2)         ----------->GT1  --------->AHL20(2) --->NtERF2 --------->At4g35610           <---------ARR14(2)        <---------TOE2(3) <---------AHL20(2) ------ANAC46  <-------TEIL         --------->MYB46(3)    <---------AHL20(2)--------->MYB52(1)     --   cgtcgaaacaagacagatgcaggtgtttgggagtctcaacaacgaatcctcaccgtctgtttattttctaaaggttaataacgtaaatttaaatatctaa  21324200    <-------GAMYB    --------->At5g28300   ----------->GT1   <---------MYB46(3)          --------->AHL20(2)                          *TSS --------->SPL7              <-----------TBP      --------->TOE2(3)   --------->ANAC58 --ARR10 ---------->DOF2    <----------DOF2  <-----------HVH21        --------->ANAC58 --------SPL7             ----------------->AGL3 --------->At4g35610---------->DOF2   <-----------GT1 --------->HVH21       <----------DOF2 <-----------TGA1    ----------------->AGL1 <----------DOF2   tcggacggttataaagcctcttactctttccttttatatatcgtcactatcacctcaaaatgccataagagaaagcaacttcttcttttctctctctaaa  21324300                                                       <---------ICU4                                                      <---------YAB1                                                     --------------->AGL15                                                    --------->YAB1                                               <---------ANAC58    <---------AHL20(2)        <-----------ARR10                      <---------ANAC58    --------->AHL20(2)        <---------ARR14(2)                 --------->YAB1          --------->AHL20(1)   <----------DOF2        --------->GLK1(2)                 <---------YAB1    ----------->GT1       ------>ZmHOX2a(2)        --------->ARR14(2)              --------->YAB1--------->ICU4      <---------GLK1(1)       <--   tttctcagagtatctaatctctctctcttctctcgttccatattatcatgcgtttcataattcagtaaattttttgaaatctgatctgttctttctgaag  21324400                                                <---------MYB46(3)     <---------AtMYB61                                                --------->MYB55(2)     --------->ALFIN1                                               <---------ANAC46        <---------DEAR3(1)                                               --------->ALFIN1      <---------MYB46(3)                                             <---------MYB46(3)      --------->MYB55(2)                                             --------->MYB55(2)     <---------AtMYB61                                            <---------AtMYB61       --------->ALFIN1                                            <---------DEAR3(1)     <---------ABI4(1)                                            --------->ALFIN1       <------NtERF2<---------ARR14(2)                                          <---------MYB46(3)       <-------GAMYB--------->ARR11(3)                                          --------->MYB55(2)      <---------MYB46(3)                                         <---------DEAR3(1)      <---------DREB2C(2)                                        <------NtERF2            --------->ALFIN1                                        <---------ABI4(1)        <---------DEAR3(1)                                      <---------DEAR3(1)       <---------RAP2.3(1)------>ZmHOX2a(2)                                      <---------DREB2C(2)     <---------RAP2.6(2) ===================                                      --------->ALFIN1        <---------RAP2.3(2)====================                                     <---------ABI4(1) --------->ARR14(2)       <---------AGP1                       --------->GLK1(2)<-------GAMYB  <---------GLK1(2)<---------MYB46(3)       <---                       --------->ARR14(2)<---------AtMYB61    --------->ANAC46  --------->AGP1   <---                       <---------ARR14(2)--------->ALFIN1    <---------At5g28300<---------ARR11(3)  <                      <---------GLK1(2)<---------MYB46(3)   <-----------GT1<---------MYB46(3)    <---             --------->YAB1         ------>NtERF2<------MYB83<---------LBD16 <--------P <---------LBD16          ----------->GT1           --------->LBD16 --------->ETT(1)<---------DEAR3(1) ----------->RAV1(2)          --------->YAB1           <---------DEAR3(1)  <---------ARR14(2) <---------AtMYB61     <---- --------DOF2--------->AHL20(2)   <---------LBD16<------MYB46(1)<---------ABI4(1)<------ZmHOX2a(2)---   cttttgagagaataataaaaaatggaatctggtttctccggcggtggtggtgggtcggatttttacggcggtggtggtggtagatctatacctggaggtc  21324500                                                                                                   <-                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                              <------                                                                    --------------------->WRI1-------                                                                    <----------DOF2           <------                                                               <---------HSFC1(2)             -------                                                               <---------HSFB2a(1)            <------                                                               --------->HSFC1(2)            <-------                                                               --------->HSFB2a(1)           --------                                                             <---------GLK1(2)               --------                                                          <---------HSFB2a(2)                <------NtERF2 --------->ARR14(2)                                       ============================HOX2a_HOX2a  -- <---------ARR14(2)                                       --------->LBD16                   <-------- ======HOX2a_HOX2a                --------->At4g35610     ------>ZmHOX2a(1)                 <-------- ======HOX2a_HOX2a             ------>ZmHOX2a(1)          ===========================HOX2a_HOX2a <--- --------RAV1(2)              --------->TOE2(3)           --------->HSFB2a(2)              <---------DEAR3(1) ------LBD16              --------->YAB1              --------->GLK1(2)                 <---------GLK1(2) ------ZmHOX2a(1) --------->At5g28300                <---------ARR14(2)        ------>ZmHOX2a(2)<---- ------HSFB2a(2) <---------DEAR3(2)                  <---------GLK1(2)        <------ZmHOX2a(2)------ ---TEIL <---------YAB1--------->YAB1  <---------ANAC46  <---------LBD16     <---------ARR14(2)<----- ------>LBD16    ----------->GT1<-----------RAV1(2)  --------->ARR14(2)      --------->ARR14(2)------   caggaactgttatcaacgtcggtaacaataatcctcagacgacgtatagaaaccagattcctggaatcttctttgatcagatcggaaacagagtcgccgg  21324600      --------->ARR14(2)      <---------GLK1(2)      <---------ARR14(2) -----NtERF2 ----ATERF1(1) ----DEAR4(2) ----RAP2.3(1) ---DEAR3(1) -->DEAR3(1) ---ATERF1(2) -->ATERF1(2) ---RAP2.3(2) --LBD16 ->RAP2.3(1) ->ATERF1(1)            <----------DOF2                                                   --------->ANAC58 ------->At5g28300   <------ZmHOX2a(1)          <---------At4g35610                       --------->ANAC58 -RAP2.3(1)   --------->LBD16              --------->At4g35610                           --------->WOX13(1) -ATERF1(1)  --------->LBD16    <---------GLK1(2)                         ------->GAMYB--------->WRKY18(1) ------DEAR3(1)  ---------->DOF2<---------ARR14(2)        --------->MYB46(3)   <---------MYB52(1) --NtERF2    --------->HSFB2a(2)--------->ARR11(3)   --------->TOE2(3)   <---------MYB111(2) >NtERF2     <---------HSFB2a(2)--------->ARR14(2)  --------->REM1(1)    <---------MYB55(2)   <------ ----ERF1   <---------LBD16     <---------ARR11(3)----------->RAV1(1)    --------->MYB46(3)   ------- --->LBD16 <---------LBD16  <---------At4g35610 --------->At4g35610      <---------MYB52(2)   -------   cggtaatggattctccgggaaaaggactttagcagattttcaagcggctcagcaacatcaacaacaacaacaacaacaaccgttttatagtcaagcagct  21324700                                                                                       --------->YAB1                                                                               <---------DREB2C(2)                                                                             <-----------HVH21                                                                      <---------ARR11(3)                                                                   <---------WOX13(1)<---------WOX13(1)                                                                 --------->ATHB12--------->At5g28300                                                                <---------YAB1 <---------At1g77200                                                                <---------ATHB12<---------DEAR3(2)                                                            <------NtERF2   <---------O2                                                          --------->DEAR3(1)<---------TGA1a                                                          <---------DEAR3(1)--------->O2                                                         --------->ATERF1(1)--------->ANAC46     <----------DOF2                          <-----------GT1--------->DEAR3(1)<---------DEAR3(1)     <---------DAG2                       <---------GLK1(2)------>NtERF2------>ZmHOX2a(2)--------->CCA1(2) ---At4g35610         ----------->HVH21--------->YAB1   <---------ATERF1(1) --------->TGA1a -->At4g35610    <---------ARR11(3)   <---------YAB1    <-----------HVH21----------->HVH21 -->ZAT2  <----------DOF2          --------->ICU4      --------->ANAC46<---------At4g35610   ctcaacgcttttctttcaaggtctgtgaagcctcgaaattatcagaattttcaatctccgtcgccgatgattgatctcacgtcggtgaatgatatgagtt  21324800  Previous    Next  AGI:  At5g52510.1    Description:  scarecrow-like transcription factor 8 (SCL8). similar to SCL1 (SCARECROW-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G21450.1); similar to unknown [Populus trichocarpa] (GB:ABK94962.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 21324275    to: 21326528    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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