Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                -------->P                                             ------->GAMYB                                            <---------MYB55(2)                                            <---------MYB111(2)      --------->ARR14(2)           <---------HSFB2a(2)                                            ---      <---------ARR14(2) --------->ARR11(3) <------------MYB.PH3(2)             <---------MYB52(1)<-- --------->ANAC58   --------->MYB52(1) --------->ANAC58                     ------>NtERF2         <-- --------->ANAC58  ------->GAMYB   <---------HSFC1(1)                    <-------TEIL             --- >GLK1(2)<-----------HVH21 ------>ZmHOX2a(2)--------->MYB46(3)           --------->SPL7<---------TGA2(1) -ARR11(3)        <---------MYB52(2)   --------->ANAC58                <---------SPL7  <---------bZIP60(1) >ARR11(3)        --------->MYB46(3)   --------->ANAC46               <---------HSFB2a(1)     <------ -ARR14(2)     <---------WRKY12<---------CCA1(2)                ----------->HVH21      --------->bZIP60(1) >ARR14(2)     <---------WRKY38(1) --------->HSFB2a(2)        <----------DOF2   --------->ICU4-------   gataagcaaatcgtcgggcaacgaactgatctcgtctctagaagcaacaacctcttcatcaattctttgacaacgttcggccattagtgatgtaatagct  21311000                                                                                             <-------                                                                                             --------                     <---------------AGL15                                                   --------                     --------------->AGL15                                                 --------->ARR11(3)                    <-----------------AG                                              --------->TOE2(3)        <---------YAB1           <---------At4g35610                                  --------->TOE1(3) ------>At4g35610   ----------------->AGL1     <------ZmHOX2a(1)                      --------->TOE1(2) -------ZAT2        <-----------------AGL1   --------->ALFIN1                   --------->HSFB2a(2) -------At4g35610  ----------------->AGL3   <------ZmHOX2a(1)            <---------At4g35610--------- ------>ZAT2    --------->ARR11(3)        --------->ALFIN1           <----------DOF2--------->GLK1(2) ---STY1(2)     <---------ARR11(3)    --------->CCA1(2)     --------->TOE2(3)   <---------HSFB2a(2) -->STY1(2) ---------->DOF2      --------->At4g35610        --------->TOE1(3)  ------>ZmHOX2a(2)  ---   agctgagtttgtgataaagatttcaaatataggtaagcagagacgaggaggagcaagtcgaaccctaaaaactttagatgatcgagaaccttagatatat  21311100                                                                                  <---------ANAC55(1)                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                                  --------->ANAC55(2)                                                                                  <---------ANAC58 --ARR11(3)                         <------------MYB.PH3(2)                      <---------LBD16 ->AHL20(1)                         <---------MYB59                   >>>>>>>>>MYB98 ->ARR11(3)          <---------TOE2(3)  --------->ZAT6            --------->TOE1(3)--------->LBD16 >CCA1(2)        <------------CBF   <---------MYB52(2)    --------->YAB1     <----------DOF2 ------>YAB1--------->YAB1 ----------->GT1       ---------->ARF1  --------->TOE2(3)<-----------HVH21   tcgtaatttctctatgagaaattgagaataagtgaataactaactcttcttgtctcacaaaaataaaaccctaacttatcttttccgtgagacataaaca  21311200                                                          ------>MYB46(1)                                                          ------>MYB83                                --------->ARR11(3)     --------->ANAC58                                <---------ARR11(3)     --------->ANAC46                            --------->ATHB51           --------->ANAC58                            <---------ICU4        <------ZmHOX2a(2)                            --------->YAB1       <-----------ARR10               <---------AHL20(2)      <-----------------AGL1               --------->AHL20(2)    <---------WRKY18(1)<---------MYB59                    <---------YAB1    <----------DOF2         <--------HAHB4     --------->LBD16                          --------->DOF5.7(2)  ------>MYB46(1)          --------->ICU4  --------->ARR14(2)                     --------->MYB46(3)  ------>MYB83<---------ATHB12<---------YAB1 <---------LBD16                    --------->PCF2 <---------ALFIN1          <---------YAB1  <---------ARR14(2)       <----------DOF2   <---------ICU4   aacccactttgggccaataaaatcggcccattattatcttgacccaatccggatcaaacccaactccatactttggagtttggacccatcgttaccaatg  21311300                         <---------YAB1                         <---------AHL20(2)                                                         -                     <-----------TBP                 --------->ANAC46                              <-                   --------->CCA1(2)                 --------->ANAC58                      --------->ARR11(3)                  --------->ARR11(3)                 --------->ANAC58       --------->TOE2(3)--------       <---------TOE2(3)--------->AHL20(2)   --------->AHL20(2)      --------->YAB1        <---------ARR11(3) --------->ZAT18  <---------ARR11(3)      --------->YAB1         ---------->DOF2---------->DOF2    -- <---------ZAT18<---------TOE2(3)       <-----------TBP      <-----------GT1--------->TOE1(3)--------   tagtagactaatgtagttaagatatatataatagaagggcctatttataaaatacaagaaatgttaccaaagcataaaccctaaaagccctaaaatctta  21311400                                         <---------ALFIN1                                        <---------ZAT18                                       --------->DEAR3(1)                                      --------->ANAC46                                    --------->DEAR3(1)             *TSS                   --------->AtMYB61           ------->GAMYB            <---------ALFIN1         ------>MYB46(1)           <---------ABI4(2)         ------>MYB83              <---------MYB55(2)    <-----------GT1                --------->MYB46(3) ---------->TBP                   ------>NtERF2                                                 <---- --------AHL20(1)                --------->RAP2.6(2)                                            <---- ->YAB1--------->AtMYB61        --------->MYB46(3)                                    <---------ANAC58 ------->AHL20(1)              --------->At4g35610                                 <----------DOF2 ->TOE2(3) ----------->HVH21  --------->ANAC46        <----------DOF2 <-----------GT1 <---------ANAC58   atatataaaccaactcacagagactctaaaatcagccaccaccgcacatctctctcctttgccctcgttttttttcggttctcgtctttcgttcttcact  21311500          <---------ARR14(2)          --------->ARR14(2)                   <---------TOE1(3)     --------->ANAC46                  --------->TOE1(3)     --------->ANAC58                  --------->TOE2(3)     <---------ANAC58     --------->ANAC58           <--------P    ---------->DOF2<---------ANAC58     --------->AtLEC2         --------->ANAC46<---------DOF5.7(2) -----DAG2--------->ICU4    <-----------RAV1(2)<---------TOE2(3) ------DOF2          --------->LBD16 ------->TEIL         <----------DOF2             <-----------GT1   tttagacaagcaaatatgagacccccagttacaggtaagaaccttagttaaagtttatgtctttcttgttctgtctgcctctagagtataaccctgtccg  21311600                 --------->YAB1                 <--------HAHB4                   <---------TOE2(3)        <---------ARR14(2)                 <---------ICU4                   <---------TOE1(3)        ------->TEIL                <---------YAB1               --------->MYB111(2)           --------->ARR14(2)               <---------ARR11(1)            --------->MYB111(1)     <----------DOF2              <---------CCA1(2)              --------->MYB46(2)     <---------DAG2   --------->ARR14(2)                        <---------MYB46(3)   ------->TEIL               --------   <---------ARR14(2) <---------TOE2(3)     <--------P  <---------AHL20(2)<---------CCA1(2) ---------   tatcaaatctgaattcgtatcattacggtttctgtagtttgaattggtagttagggttttaattcatgagccttttgtatcttcactgtttcaataaagt  21311700                                                                                          <---------AtMYB61                                                                                          --------->ALFIN1                                                                                      <-------PIF5                                                                                      ------->PIF5 --                                                                                     <---------ANAC58                                                                             <---------ICU4  --------                                                                             --------->YAB1<---------MYB46(3)                          --------->ZAT6                                  --------->YAB1  <---------DEAR3(1)                    <---------AHL20(2)                                   <---------YAB1--------->ALFIN1                   --------->AHL20(2)               <-----------GT1    --------->YAB1<---------ANAC58               --------->ARR11(3)              <---------AHL20(2)   ----------->GT1  <---------bZIP60(2)      ---------->DOF2   <-----------GT1     ----------->GT1    <------MYB83  <-----------RAV1(2)   <-    --------->CCA1(2)--------->YAB1      <---------MYB52(1)    <------MYB46(1)     <------ZmHOX2a(1)  --------->YAB1<---------RVE1(1)      <---------ANAC58    ==============================RAV <------- ->DAG2        <---------GLK1(2)       <---------ANAC46    <-----------RAV1(1)  <------ZmHOX2a(1) <-- ->DOF2        <---------ARR11(3)      <---------ANAC58   ------->TEIL<---------YAB1 <---------ANAC46   tcaaagataaaagtagagatttttaataacactctgttcttccgtttagttaattttctgtatgttggtattgttataatcaggaggacgtggtggtgga  21311800                                                                                                    <                                                                                                    <                                                                                                    -                                                                                              <------                     <---------MYB46(3)                                                     <------NtERF2        --------->ALFIN1                                        <---------RAP2.6(3)    <---------ZAT18 ------->ARR14(2)   <---------AtMYB61            --------->HSFC1(2)         --------->At4g35610   <-- ->ALFIN1           --------->ALFIN1             <---------HSFC1(2)    ----------->HVH21 <---------PCF2 --------ARR14(2)<---------AtMYB61       --------->ALFIN1 --------->ATERF1(1)         --------->ALFIN1 --ANAC46        --------->ALFIN1     <---------AtMYB61   <------ZmHOX2a(1) <---------At4g35610  <--- ----ZmHOX2a(1)--------->CCA1(2)<---------ARR14(2) <----------DOF2  <---------ZAT6<---------RAP2.6(3)   ggattcagaggtggaagagatggtggtggaagaggttttggaggtggaagaagctttggaggaggccgtagtggtgacagaggccgtagtgggcctcgcg  21311900  Previous    Next  AGI:  At5g52460.1    Description:  EDA41 (embryo sac development arrest 41). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63569.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 21309601    to: 21310984    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g52470.1    Description:  FIB1 (FIBRILLARIN 1). Identical to rRNA 2'-O-methyltransferase fibrillarin 1 (FIB1) [Arabidopsis Thaliana] (GB:Q9FEF8;GB:Q9FUZ8;GB:Q9SP30); similar to FIB2 (FIBRILLARIN 2) [Arabidopsis thaliana] (TAIR:AT4G25630.1); similar to tobacco fibrillarin homolog [Nicotiana tabacum] (GB:BAE91898.1); contains InterPro domain Fibrillarin; (InterPro:IPR000692) Range:  from: 21311413    to: 21313930    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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