Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------ETT(2)                                                     <---------ANAC46           ---------->ARF1                                                       <---------ANAC58       <---------AtLEC2                                                     <---------ICU4<---------GLK1(2)  <----------DOF2    ------>ZmHOX2a(1)                                      --------->ATHB12  <------ ------->ANAC58   ------>MYB46(1)                         --------->At4g35610    <---------ANAC58 ------->ANAC58   ------>MYB83XXXXXXXXXXXXXXXXXXXX>MIR832-3P               <---------ATHB12   <------   caagcttttccatgtctaccatcctgcatttgattccaaaatcaaacaaaacccctaatcagataaacaaactccaaatgatttcgtttacagaaacttt  21278100   <---------At4g35610                                                     --------->ARR11(3)   --------->At4g35610                                        --------->TOE2(3)   <---------ZAT2                                             --------->TOE1(3)   --------->ZAT2                                           ------->TEIL   <---------ARR11(3) ---DAG2                                                   <---------ARR14(2)------>ZmHOX2a(2) ----DOF2      ----------->GT1           ---------->DOF2>>>>>>>>>TBF1   <---------WOX13(1)       ----   ttctcagcttaagaaaaatgtaaacttttcaattttcagagatgaaagacaaggagaagaagaaccttatagagattgatcttagtgatttcataagaga  21278200                                            <------MYB83                                            ----------->GT1                                            --------->ANAC55(2)                                            <---------ANAC55(2)                                            <------MYB46(1)                                           --------->MYB46(2)                                           --------->MYB59                                     --------------->AGL15                                     --------->LBD16                                     <---------------AGL15                                    ----------------->AGL1                                    ----------------->AG                                    <-----------------AGL1                                    <-----------------AG                                    ----------------->AGL2                                    ----------------->AGL3                                    --------------->AGL15                                    <-----------------AGL3                                    <-----------------AGL2                                 --------->ARR14(2)                                 <---------ARR14(2)                                <---------GLK1(2)                               ---------------------                           --------->ARR14(2)                                   <----------DOF2             <----------DOF2    --------->ARR14(2)                         <<<<<<<<<TBF1        <---------ATHB12   <---------ARR14(2)                          <---------ARR11(3) ----->GLK1(2)            <---------GLK1(1)<---------TOE2(3)           --------->ARR11(3)      ------   ttccattccaatgagctttagccatatggtatccgattccccaattaggtaagaactgagcaacttcgattaagttcttcttctttcttcgtttcggttt  21278300                                  <---------At4g35610                                  <------NtERF2                                  --------->LBD16                                  ------>NtERF2                                  --------->At4g35610                                 <---------ANAC46                                 --------->RAP2.3(3)                                 --------->RAP2.3(2)                                 --------->RRTF1(3)                                 ----------->RAV1(1)                                 --------->DEAR3(1)                                 --------->RRTF1(2)                                --------->ORA47(2)                                --------->RAP2.3(1)                                --------->ERF1                                --------->RRTF1(1)                                <------NtERF2                                --------->DEAR4(2)                                --------->ATERF1(1)                                --------->RAP2.6(1)                               ------>NtERF2                               <---------ATERF1(1)                               <---------RAP2.3(1)                               <---------ORA47(2)                               <---------ERF1                               <---------DEAR4(2)                               <---------RAP2.6(1)                               <---------RRTF1(1)                              <---------DEAR3(1)                              <---------RAP2.3(2)                              --------->DEAR3(1)                             --------->DEAR4(2)                             --------->RRTF1(1)                             --------->RAP2.6(1)                             <------NtERF2                             <---------ABI4(2)                             --------->ATERF1(1)                             --------->ERF1                             --------->RAP2.3(1)                            <---------RRTF1(1)                            <---------DEAR4(2)                            <---------ERF1--------->HSFC1(2)                            --------->LBD16                            ------>NtERF2 <---------HSFC1(2)                            <---------ATERF1(1)                            <---------DEAR3(2)                            <---------RAP2.6(1)                            <---------RAP2.3(1)                            <---------ORA47(2)                                              ---------                           <---------RAP2.3(2)                                     <---------ARR14(2)                           --------->DEAR3(1)                                  ------>MYB83 ---------                           <---------DEAR3(1)                                  ------>MYB46(1)                           <---------ATERF1(2)                                --------->MYB52(1)                           --------->ATERF1(2)                               --------->DEAR3(1)                           <---------RAP2.3(3)                               --------->MYB46(3)         --------->ZAT2   <---------LBD16 --------->HSFB2a(1)                --------->AtMYB61   --------->ARR14(2)     --------->ATERF1(1)                           --------->ANAC58    <--------   <---------ARR14(2)    <---------ATERF1(1)                          ---------->DOF2       >>>>>>>ZML2 >WRI1   <---------ZAT2 --------->ANAC46  <---------HSFB2a(1)    --------->GLK1(2) --------->ARR14(2) --->ZAT14          <-----------GT1<------NtERF2        ---------->DOF2 --------->ANAC58    <--------   actcgaatcggagctagggttttcactcgccggcgccgcagagaaatttcttaagagattaagcgagagtctgaaagcaccaacggtttcggttctagag  21278400                                                                                    --------->DEAR3(1)                                                                                    ----------->HVH21                                                                                 ====================                                                                                 ====================                                                                                 <---------DEAR3(1)                                                                                <------ZmHOX2a(2)                                                                                =====================                                                                                =====================                                                                               --------->ARR11(3)                                                                               <---------ARR11(3)                                                                               --------->ARR14(2)    ----------->GT1                                                            <---------ARR14(2) >HSFC1(1)                                                             <-----------RAV1(1)   -------- >HSFB2a(2)    <-----------HVH21                                   --------->MYB46(3)     <---------TOE2(3) -HSFC1(1)  <---------ANAC55(2)           ------>ZmHOX2a(1)       <---------At4g35610------>NtERF2 -HSFB2a(2)<---------ICU4   <-----------RAV1(1)                  --------->ANAC46------>ZmHOX2a(2)<--   attgctctgttaataagtgtcatcgccatagtgtcgctctcttcctctctctctctctctcaagtttcagccactgttgaagatcggcgactgaggttga  21278500                                                                  <------MYB83                                                                  <------MYB46(1)                                                                --------->ALFIN1                                                       <------MYB46(1)             *TSS                                      <------MYB83             <----------DOF2                          --------->MYB59 <------ZmHOX2a(1)                                <---------AHL20(2) =======HOX2a_HOX2a                              <---------AHL20(1) ====HOX2a_HOX2a                                 --------->AHL20(2) ====HOX2a_HOX2a                              --------->YAB1--------->HSFB2a(2) =======HOX2a_HOX2a                          <---------YAB1 <---------HSFB2a(2)       <---------GLK1(2) ->ALFIN1    <---------DAG2                  --------->ICU4 >>>>>>>ZML2     <------MYB46(1)         < ----ZmHOX2a(1)              --------->MYB52(1)  <---------AHL20(2)         <------MYB83  --------->At4g35610   ggaggagaagcacaacttttggtttattcacaaacagactatatgttataattaatttggttctaggtgggttttgttcggtttagaagattatctgaaa  21278600            <---------MYB46(3)         --------->ALFIN1         <---------ANAC46                       <---------RVE1(1) <------------CBF                             <------ZmHOX2a(1) --------->ANAC46 ---------GLK1(2)                  <---------YAB1 <---------AHL20(2)    ---------->DOF2   cagaattggctgtgtggttccattacatagcattgttctgaataactaggatttttttgttcttacacaagactaaaagggagattagaaaacaaaactt  21278700                                                                --------->ATHB12                                   ------>ZmHOX2a(1)          --------->GLK1(2)                                <------ZmHOX2a(2)         <-----------GT1                               <---------ARR14(2)   ------->GAMYB                               --------->ARR14(2)  --------->ANAC58                         <---------DAG2          --------->MYB52(1)                                 -        ------>ZmHOX2a(1)<----------DOF2       --------->MYB46(3)                            --------        ===============================HOX2a_HOX2a --------->ANAC58             <----------DOF2     <   ttgatatatcctacaaaattgatgacccttttcgatcctcttgtgatcatccaacgaaattgacaatctttggaccttgtttctttttcttcacctcgac  21278800                                                                                       --------->TOE2(3)                                                                                    --------->ZAT14                                                                                  --------->ANAC46                                                                             --------->PCF2                                                                           <---------SPL7                                                                          ===========================                                                                          ------>ZmHOX2a(2)                                                                         <------ZmHOX2a(2)                                                                         ============================       --------->ZAT2                                                   --------->ARR14(3)       --------->At4g35610                                              <---------ARR14(3)       <---------At4g35610               <----------DOF2                --------->ARR11(3)       <---       <---------ZAT2       <---------ARR11(3)                          <---------ARR11(3)     ------ -------->ZAT14 <---------YAB1------>ZmHOX2a(2)     --------->ZAT14     <---------ARR14(2)     <----- ->ANAC46     --------->YAB1--------->ARR11(3)      <---------ZAT14     --------->ARR14(2)   <------- ---------ZAT14 --------->At4g35610  <-----------------AGL2             <-----------ARR10    --------   actattctgagctgaatcatcagaggtattgatcttcttgctgcttttgggctcttcagtgaaatcgtcttcaagatcgtccccactaaacttagtgagc  21278900  ------>ZmHOX2a(1) ========HOX2a_HOX2a                             --------->YAB1 ========HOX2a_HOX2a                             <---------ICU4 -------DOF2            <-----------HVH21       --------->ICU4                                      - --->At4g35610         ------>ZmHOX2a(1)        <---------ATHB51                          --------->LBD16 ----At4g35610     <---------ARR14(2)       <-------TEIL                          <---------At5g28300 --ZAT18           --------->ARR14(2)      --------->CCA1(2)               ------>ZmHOX2a(2)     ---- ->ZAT18<---------REM1(1)        <-----------HVH21      <----------DOF2   <------ZmHOX2a(2)     <----   tttcctcttggtgtagcatcaaatcctgtcatttcagtcagggagatacaattatggtctttataagataaatgagatcgcattcactgttccgaatcac  21279000  Previous    Next  AGI:  At5g52370.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21535.1) Range:  from: 21277504    to: 21278513    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g52380.1    Description:  zinc knuckle (CCHC-type) family protein. similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT3G43590.1); similar to unknown [Populus trichocarpa] (GB:ABK94395.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Zinc finger, CCHC retroviral-type; (InterPro:IPR013084) Range:  from: 21278579    to: 21280377    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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