Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <---------AtLEC2                                                                          <-------MYC3                         --------->YAB1       <---------YAB1              <-------MYC2                         <---------ICU4    <------ZmHOX2a(2)              ------->MYC3            <-- ------->DOF2           --------->MYB46(3)<---------ARR11(3)              ------->MYC2       <------- --->TOE2(3)            <---------ATHB12  --------->ARR11(3)----------->GT1 <-------TEIL  <---------YAB1 >WOX13(1)  <-----------GT1              --------->YAB1     <---------MYB46(3)   <---------ARR11(3)   aaaagatagactcttaaccatttctaatcaccacaatgttcaaagatcatatttggagctagtggttatttagccatgtgcatggtcttattttgataga  21233700                                                              <---------DAG2                                                              <----------DOF2                                                           <---------AHL20(2)                                                        <---------ICU4                                                       <---------AHL20(2)                                                       --------->AHL20(2)                                                   --------->AHL20(2)  <----------DOF2                      <---------At4g35610 <-----------GT1  <---------DAG2                      ------->TEIL <---------AHL20(1) <---------DAG2                    <---------REM1(1)  <---------AHL20(2)                     -------- ---------GT1                   <-------TEIL       <---------ARR11(3)                        -------- --WOX13(1)               --------->TOE2(3)        --------->AHL20(1)       --------->MYB46(3)   ttacctttttggattgtttgaacaaaaacataaatacatgtagctaatttcgatatattaattacttttctagttggaaccattcggagaacagcaagta  21233800    <---------ANAC58    <---------ANAC46    <---------ANAC58                          <---------ANAC46                          <---------ANAC58    <---------ANAC55(2)           ---------->DOF2    --------->YAB1                     <---------ANAC58 <---------ATHB12     <---------AHL20(2)--------->DAG2    ------->TEIL           <---------AHL20(2) ->ANAC58            --------->AHL20(2)---------->DOF2 <---------YAB1        <---------YAB1         < ->ANAC58    ------->TEIL       --------->ANAC46   ------->TEIL            --------->YAB1           -   ccaataacgtgaatgcatttccatttaatatcacacaaaagaaaagttccatgtatcatgaatttagcaaattccatttataaatatttggcttaactaa  21233900                                                                                              -------                                                                                              <------                                                                                             --------                                                                                           --------->ANAC58                                                                                         <-----------GT1                                                                                   --------->AHL20(2)                                                                              --------->AHL20(2)                                                                              <---------AHL20(2)                                   ---------->DOF2                      <---------AHL20(2) --------->ANAC46                         ----------->GT1            --------->YAB1      --------->AHL20(2) --------->ANAC58     <-------TEIL   --------->REM1(1)              <---------YAB1    ------->TEIL  <---------AHL20(2) ---------AHL20(2)--------------->AGL15    >>>>>>>>>GATA-1     ------->TEIL   <---------AHL20(1) -------->AHL20(2)<---------------AGL15  ----------->GT1 --------->TOE2(2)   --------->AHL20(2)   aattatatacatggtttcttctacatctagtaaaaaaaaaagatagataaaccatgatacctatgtatatgtatttatattaaatttaaatataccccac  21234000                                                                                               ------                                                                                               ------                                                                                               ------                                                                                             <-------                                                                                             <-------                                                                                             <-------                           <---------DAG2                                                  ------->TEIL                           <----------DOF2    --------->bZIP60(2)                   <---------ANAC58                       --------->MYB46(3)     --------->ANAC46                      <---------ANAC58                     --------->ANAC46       --------->ANAC46                        <---------ANAC46                   <---------MYB52(2) ----------->TBP                               <---------ANAC55(1) ---->RAV1(1)   ------->GAMYB     <---------ANAC58                    ----------->GT1   --------->ALFIN1 ---ALFIN1     <---------MYB52(2) <---------ANAC46              ------->TEIL     *TSS <---------ANAC46 ->ANAC46      --------->MYB46(3) <---------ANAC58           <---------YAB1<---------YAB1 <---------TCP16(2)   attttttgttttcgtcaacaaacaaaccactttatagcttatatatacacatcacacacacatatgaatgtgatgttaatatagtttcgtgtggacctaa  21234100                                                                              <---------ARR11(3)                                                                             ------->GAMYB                                                                          <-----------GT1                                                                --------->AGP1--------->ARR11(3)                                                                <---------ARR14(2)                                                                <---------ARR11(3)                                                  ----------->RAV1(1)     <---------DOF5.7(2)                                                  ------>MYB83  --------->ARR14(2)                                                  ------>MYB46(1)<------ZmHOX2a(2)                                                <---------MYB59 --------->ARR14(3)                                                --------->MYB46(3)------>ZmHOX2a(2)                                               --------->ANAC58 --------->ARR11(3) --------->ZAT6                                --------->ANAC46 <-----------ARR10 --->MYB52(1)                                  --------->ANAC58 <---------GLK1(2) >MYB46(1)                                   --------->GLK1(1)  <---------ARR14(3) >MYB83                             --------->ZAT14            <---------CCA1(2)         <<<<<<<<<TBF1 --MYB59                            <---------ZAT14 --------->MYB46(3)    --------->MYB52(1) --MYB46(2)                         <---------At4g35610 ----------->RAV1(1)<---------TOE2(3)<<<<<<<<<TBF1 --MYB111(1)                <----------DOF2  --------->CCA1(2)----------->ARR10<------ZmHOX2a(2)   ctaaaactagtcgtaactcattcatggaggctttgttctgctctgagatacccaacaacaacatcagatcttccattaacgatctatcttcttcttcttc  21234200                                                                                 ----------->HVH21                                                                           <---------HSFB2a(2)                                                                           --------->HSFB2a(2)                                                                           ------>ZmHOX2a(1)      <--                                                                           =======================HOX2a_HOX2a                                                                      --------->KAN4(2)    ==========               <---------ICU4                                        <---------HSFB2a(1)   ------>ZmHOX2a(2)               --------->YAB1                              ------->TEIL    ======================HOX2a_HOX2a              <---------YAB1                          <---------ICU4 <---------HSFC1(2)   ===========             <---------ARR11(3)            <---------At4g35610       --------->HSFC1(2)   <------ZmHOX2a(2)            --------->YAB1           <<<<<<<<<TBF1    --------->YAB1 --------->HSFB2a(1)  <---------GLK1(1)           --------->ICU4------>ZmHOX2a(1) --------->At4g35610       --------->KAN4(1)    --------->GLK1(1)           <---------ATHB12       <<<<<<<<<TBF1      --------->ICU4 <---------KAN4(2)    <---------ARR11(3) <-------TEIL--------->ARR11(3)<<<<<<<<<TBF1         <---------ATHB12<---------KAN4(1)   --------->ARR11(3)   atatacatggccaatgatcatgacctcctcttcttcttcttcttcatctcccacaatcatgaacatagagaacattcctagatgcgactgggatctctct  21234300                              <------ZmHOX2a(2)                             <-----------HVH21                             <---------ARR14(2)                             --------->ARR14(2)                           --------->LBD16                        --------->MYB52(1)                                               <---------ARR14(2)                       <---------ALFIN1                                                  --------->ARR14(2)                      --------->MYB46(3)                                                =============                 --------->ANAC46                                        <------ZmHOX2a(2)               ======================HOX2a_HOX2a                         <---------YAB1 =============       <---------MYB52(1)<---------LBD16                                --------->ARR11(3)        ---      <-------GAMYB <---------ARR14(2)                                  <---------ARR11(3)      -----   --------->LBD16  --------->ARR14(2)                            --------->LBD16       =============   ------>NtERF2<---------LBD16                                 <---------LBD16         <------ZmHOX2a(1)  --------->ANAC46--------->LBD16      --------->MYB52(1)      --------->MYB52(1) <---------ANAC46=== --------DOF2  ------>ZmHOX2a(1)   --------->ANAC46            ------>MYB83      --------->MYB52(1) =====================HOX2a_HOX2a  --------->ANAC58            ------>MYB46(1)   <---------LBD16----- =====================HOX2a_HOX2a  --------->ANAC58            -------->P======================HOX2a_HOX2a   ctttccgccgttgtttcctccgcatccaccggatcagacgctatcggagcaatcgagttcgaccctaccggagagatcatagctacgggaggaatcgcaa  21234400                                                 --------->ANAC55(1)                                                 --------->ANAC46                                                 --------->O2                                                 --------->bZIP60(1)                                                 --------->ANAC58                                                 <---------bZIP60(1)                                                 --------->ANAC58                                                 --------->ANAC55(2)                                       ------->MYC3                                       <-------MYC3                                      --------->ANAC58                                      <---------ANAC58                                      <---------TGA1a                                      <---------ANAC46                                      --------->O2                                      --------->TGA1a                                      --------->ANAC55(2)                                      <---------ANAC55(2)                               <---------HSFC1(2)                                      --------->ANAC58                                  --------->HSFC1(2)           <---------CCA1(2)          <---------ANAC58                             <-----------------         ------>ZmHOX2a(2)            --------->ANAC46                             <------NtERF2        <------ZmHOX2a(2)             <---------O2  --------->MYB52(1)            --------->LBD16       <---------ARR14(2)             --------->bZIP60(1)                         <---------ATERF1(1)       --------->ARR14(2)             <---------bZIP60(2)                         ------>NtERF2   <------ZmHOX2a(2)     <----------DOF2         <---------ANAC55(2)             --------->ATERF1(2)  <---------ARR11(3)     =======================bZIP_DOF                         <---------ATERF1(2)  --------->ARR11(3)  --------->ARR11(3)      <------ZmHOX2a(2)                  --------->DEAR3(1) ==============HOX2a_HOX2a            --------->bZIP60(2)                        <---------DEAR3(1) ===============HOX2a_HOX2a           <---------bZIP60(1)                       <---------LBD16 ------->DOF2     ==============================bZIP_DOF                        --------->ATERF1(1) ---->ANAC58      ---------->DOF2   ------------->DYT1                         <---------ATERF1(1) =========HOX2a_HOX2a <---------ARR11(3)----------->HVH21 <-----------HVH21   --------->ANAC46 ===============================================bZIP_DOF--------->At4g35610   --------->ANAC58 ---->ANAC58  <---------ANAC46    <-----------HVH21----------->HVH21          --------->ANAC58   gaaagatcagatcgtatcgtttaagctctttgttagagtcacgtgacgatcacgtaacagcttcagagagctatatttgcacgccggcgaagcttagtag  21234500                                                                          --------->ALFIN1                                                                        --------->O2                                                                        <---------O2                                                                        <---------ANAC46                                                                        --------->TGA1a                       <-----------HVH21                                <---------bZIP60(2)                       <---------MYB52(1)         <---------LBD16       <---------TGA1a                    <---------LBD16      <------ZmHOX2a(1)           <---------TOE2(1)                  <-----------GT1       <---------At4g35610          <---------TOE1(1)           ----        <---------GLK1(1)             <-----------RAV1(2)           --------->SPL7      <---------ANAC58 ----WRI1     <---------GLK1(2)     <-----------HVH21     <-----------HVH21             <---------ANAC58   tctcaaatggagacccgatttttccggtcgggttatcgggtcaggagattacgacggagttgtcaccgagtacgacgtggagaaacaagtgcctgtttcc  21234600  Previous    Next  AGI:  At5g52250.1    Description:  transducin family protein / WD-40 repeat family protein. similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G23730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17232.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 21234081    to: 21235452    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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