Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    ----------->HVH21                                                                ----------->RAV1(2)                                                                --------->At4g35610                                                                <---------ZAT2                                                                --------->ZAT2                                                         --------->LBD16                                                      ------>ZmHOX2a(1)                                                      ===================================HOX2a_HOX2a                                                  <---------ARR14(2)                                                  --------->GLK1(2)                                           <-------GAMYB<---------HSFB2a(2)                                          <---------MYB46(3)    <---------At4g35610          <---------MYB52(1)              <---------DEAR3(2)  <-----------RAV1(2) -------->TOE2(3)                        <---------DEAR3(1)==============================HOX2a_HOX2a -------->TOE1(3)  --------->At4g35610 ------------>AtMYB77<------ZmHOX2a(1)                    xxxxx --------GT1       <---------At4g35610----------->HVH21 --------->HSFB2a(2)       <------ZmHOX2a(2) -->YAB1 <---------SPL7      ---------->DOF2      --------->ARR14(2)            <---------GLK1(1)   aaccttagcaccgttcgatttagctacagagcaaagcgcatcgacggttgagaatcctccaggaccagctgaagcgattaagagatcagaagatgagatt  21219400                                                         <---------HSFB2a(2)                                                         --------->HSFB2a(2)      <-----------HVH21                            --------->ANAC58     --------->bZIP60(1)                           --------->ANAC58                        <---------ALFIN1     <---------bZIP60(1)                  --------->ALFIN1       <----------DOF2       --------->SPL7  --------->ALFIN1          --------->ALFIN1     --------->CCA1(2)           --------->ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(se3)       ---------->DOF2 ------->TEIL           <---------ARR11(3)   ggaggtgttgtcatgtcgaagactaagtgagtggggagaccaaagtggaagagacgcatcgcgaaggcttttagcattagaccttcgcgtccaacaccgt  21219500                           --------->LBD16                          <---------ANAC58                     <---------MYB46(3)                    <---------ANAC58                                     --------->ARR14(2)                    <---------ANAC46                                   <---------MYB46(3)               <-----------RAV1(1)                                    <---------ANAC46               <---------MYB46(3)                                   --------->MYB55(2)               <---------REM1(1)                                    <---------MYB46(3)       <-------TEIL <---------RAP2.6(2)                            --------->ALFIN1      --------->CCA1(2)   <---------LBD16                 --------->ARR11(3)          <------MYB83      --------->ARR14(1)  <---------ANAC46      <---------MYB52(1) <---------AtMYB61  <---------MYB46(3)     --------->ARR11(1)   <---------ANAC58--------->At4g35610      <---------DEAR3(1) <------MYB46(1)     --------->ARR14(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------ZmHOX2a(2)         <---------AtMYB61     <---------ARR14(2)  <---------LBD16  <---------At4g35610   <---------DEAR3(1)  <--------P     --------->TOE1(2)<-------GAMYB   --------->At5g28300 <---------ARR14(2)     <---------AtMYB61   ----------->ARR10<---------ANAC58<---------ANAC46     --------->GLK1(1)--------->CCA1(2) <------ZmHOX2a(1) <---------LBD16 <---------LBD16     <------ZmHOX2a(1) <---------ARR14(2)<---------ANAC46   agaggaagatacgagagttgttgcggttgcgggagattgcggtaagctctgttactaggagatcgagcggtggtggatatggtgaggttggttttgtgaa  21219600                   <---------ARR14(2)                                                             <--                   --------->ARR14(2)                                                             ---            <---------ANAC58                <---------ANAC58                                     <---            <---------ANAC58        --------->ANAC58                                           <-----            <-------GAMYB           --------->ANAC58                                           ------           <------MYB83            <-------TEIL                                               <------           <------MYB46(1)        --------->ARR14(1)                                        ---------           <---------MYB46(3)    <---------GLK1(2)                                          <--------          <---------AtMYB61      --------->ARR11(1)         --------->ANAC58             --------->YAB1        --------->CCA1(2)        <---------ARR14(2)        --------->SPL7          <---------At4g35610     ----------->ARR10           --------->ARR14(2)<----------DOF2                 --------->At4g35610 <---------At4g35610           ----------->ARR10 <---------At4g35610<---------TOE2(3)   <---------YAB1 --------->At4g35610--------->CCA1(2)       <---------ANAC58--------->ANAC58 <--------ATHB1<---------YAB1   gacagatgagatttggttgcagatttgagaagatagattcgccatttcttgagctttctcgttcgccattgatgttgaataattcagcttatcatcatca  21219700                                                                                  <------MYB46(1)                                                                                  <------MYB83                                                                               <---------MYB52(1)                                                                             <------MYB83                                                                             <---------DEAR3(2)                                                                      <---------LBD16 -------ICU4                                                         *TSS <---------MYB52(1) ------>YAB1                                                   <---------WOX13(1)--------->MYB59 ------YAB1                                               <-------GAMYB   <---------ARR14(2) ----ICU4       <----------DOF2                          <---------MYB46(3)  <------MYB46(1) --->YAB1  <---------ANAC58          --------->AHL20(2)  --------->MYB55(2) --------->MYB59 ---YAB1   <---------ANAC46 ------->MYC3               <---------MYB52(1) --------->ARR14(2) >YAB1     <---------ANAC58 <-------MYC3      <---------MYB52(1)   <---------GLK1(1) <----------DOF2 -ICU4  <---------CCA1(2)<---------ALFIN1<-----------GT1 ----------->GT1--------->LBD16    <---------   tcatcatcttatatcgtgcattttggaccacgtttacaaatttataccgtttgattcggtggttaattgaattccggttcggttcggttttaatgtcata  21219800                                                                         --------->ARR11(3)               <-----------------AG                                    --------->ANAC58        ------              --------->YAB1                                           --------->ANAC58 ------------- --HVH21 ------------>CBF       <---------REM1(1)              ----------->HVH21   --------->YAB1   tcaaacaaaaatacaatgacaaatttggaatatgatgtaagaacatagaacatggaagaacagaggtgacagtaagaaattgcattcaaaatgctataaa  21219900             --------->ATHB12         --------->ATHB51         --------->ATHB12                           <-------TEIL        <---------YAB1                             --------->CCA1(2)      --------->ANAC55(2)                   --------->HSFB2a(2)      <---------ANAC55(2)                   <---------HSFB2a(2)    --------->YAB1                          <---------HSFC1(1) --------->WOX13(1)                         --------->HSFC1(1)                           <---------At4g35610 ---->DOF2 <---------WOX13(1)        <---------AHL20(2)                                  --------->At4g35610 ----------->ANAC81         <-----------GT1<---------LBD16----------->GT1       <---------TOE2(3)   agacaatcacataattgatgggagtttttgtttccttcttaaatttctggaagattcaaattgataaaaaccaagattagttgagattgagagctctctg  21220000                                                                            ----------->HVH21  <-----                                                                      ===========================MYC_MYB                         <---------WOX13(1)                           <---------bZIP60(1)      ------                       --------->ATHB12                               --------->bZIP60(2)     -------                      <---------YAB1                                  ===============================               --------->ZAT18                                        --------->bZIP60(1)============               <---------ZAT14                                  ----------->TGA1         <-------GAMYB               --------->ZAT14                                <---------At4g35610        <---------ANAC58               <---------ZAT18                       --------->LBD16  <---------TGA1a    <---------ANAC58             --------->ZAT14        ----------->GT1<-----------RAV1(2)--------->TGA1a  <---------AtMYB61        <---------At4g35610      ===============================================bZIP_DOF<---------MYB46(3)        --------->At4g35610      ---------->DOF2   <---------LBD16----------->STF1  <---------MYB52(1)   tgaaacatggagcagagtacacatttgattgaacagaaaggttttatattaactcaggggatgaagatgacgacgtccctgataccgttttggttgcatc  21220100                         <---------O2                         ===========================================bZIP_DOF                         --------->TGA1a                         --------->O2                         =================MYC_MYB               <----------DOF2               ====================bZIP_DOF              <----------DOF2            --------->LBD16       <-------GAMYB            ------>NtERF2<---------bZIP60(1)          <---------LBD16<---------ANAC58        --------->ARR14(2)       --------->MYB52(2)   <----------DOF2       <---------ANAC58   ================================bZIP_DOF ----At4g35610<---------DAG2     <---------MYB46(3)      <----------DOF2       ====================== --->At4g35610=====================bZIP_DOF             <---------DAG2         ====================== >TEIL  <-----------GT1  <---------ANAC46            <-----------GT1           ------>ZmHOX2a(1) =============bZIP_DOF   <---------TGA1a          <-----------GT1        ------>ZmHOX2a(1) ==================================MYC_MYB      <---------WOX13(1)  --------->YAB1   <<<<<<<<<TBF1   taactctttgtttccgcctttagtgtgtcgtgagtttgttgttgtctctgatttactaccttttgcaccatcatcctcttcctcttcttcttcatagaat  21220200                    <---------ALFIN1         ------>ZmHOX2a(2)                                                                -----------        --------->GLK1(1)                                                                --------->GLK1(2)        <---------GLK1(1)                                                               <---------GLK1(2)        <------ZmHOX2a(2)                                                               <---------ARR14(2)       --------->ARR11(3)                                                             --------->LBD16       <-----------ARR10                                                             --------->HSFC1(1)       <---------AGP1                                                                <---------HSFB2a(2)       --------->GLK1(2)            ---------->ID1                                   --------->HSFB2a(2)       <---------ARR14(2)   --------->LBD16                                    <---------ALFIN1       <---------ARR11(3)  <---------HSFB2a(2)             <-------GAMYB       --------------->AGL15       --------->ARR14(2)------>MYB46(1)                  <---------ANAC58    ----------------->AGL1      <------ZmHOX2a(1)  ------>MYB83                     <---------ANAC58  <-----------GT1   <------ ==============HOX2a_HOX2a --------->HSFB2a(2)           --------->ZAT18 <---------ICU4 --------->ARR14(2) ===============HOX2a_HOX2a--------->ANAC46    <----------DOF2       <-------TEIL    <---------HSFC1(1)   gaccctgaggatctcagttccttcaccttccgaaactcgtcgtaatgtgcttttctgtgtgcgttgaaacgttcatttttaccacttccagaacctgtgg  21220300  Previous    Next  AGI:  At5g52190.1    Description:  sugar isomerase (SIS) domain-containing protein. similar to unknown [Populus trichocarpa] (GB:ABK94099.1); contains InterPro domain Sugar isomerase (SIS); (InterPro:IPR001347) Range:  from: 21218956    to: 21219769    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g52200.1    Description:  phosphatase inhibitor/ protein phosphatase inhibitor. similar to unknown [Populus trichocarpa] (GB:ABK94994.1); contains domain PTHR12398:SF5 (PTHR12398:SF5); contains domain PTHR12398 (PTHR12398) Range:  from: 21219865    to: 21221985    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version