Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->LBD16                                                                                   ------>ZmHOX2a(2)                                                                                   ==================                                                                                  ===================                                                                                  <---------GLK1(1)                                                                                  --------->GLK1(1)                                                                                  <------ZmHOX2a(2)                             <---------HSFB2a(2)                                 --------->ARR11(3)                             --------->HSFB2a(2)                                 <---------ARR11(3)                            ------>ZmHOX2a(2)                                    --------->ARR14(3)                  <---------ANAC46                              <------MYB46(1)  ---------->TaMYB80                  --------->ALFIN1                              <------MYB83     <-----------ARR10                <---------MYB46(3)                             <---------DEAR3(1)<---------ARR14(3)               <---------AtMYB61    <------ZmHOX2a(1) <---------At4g35610        --------->ARR14(2)     ----------->GT1        ===============HOX2a_HOX2a--------->At4g35610    --------->LBD16        <   <---------ANAC58         <---------LBD16       <-----------HVH21<-----------HVH21 <---------LBD16<   <---------ANAC46      --------->ATHB12        <---------bZIP60(1)       <---------LBD16         --   <---------ANAC58     ----------->HVH21  --------->ATHB12    <---------AtMYB61 <---------ARR14(2)<- ---->At5g28300--------->ALFIN1 ---------->DOF2  --------->bZIP60(1)     --------->GLK1(2)       ----   tgaatgggtgtaaaacagtggtgggagtgatcgggaaaggacacatgaatggtgtcatctacgcgttggtgtcagactctggggatctccggtttagaga  21147100           <------ZmHOX2a(1)                         <------MYB46(1)  <---------ANAC46                                   <------MYB83 =================HOX2a_HOX2a                 --------->MYB52(1) =================HOX2a_HOX2a    <---------------AtSPL3 ------MYB83                     --------------->AtSPL8                  <---------ARR11(3) ------MYB46(1)                  <---------ZAT6    <--------P            --------->ARR11(3) ------->MYB111(1)         <---------------AtSPL3<---------MYB46(3)  ---------->DOF2         -------- --------AtMYB61     <---------AHL20(2)  --------->REM1(1)     ----------->GT1              <-------- ----->CCA1(2)  <-------TEIL <---------SPL7  <---------SPL7   --------->DAG2 <-------TEIL   <--------   tttggtgggaagaggagattcatataatggtggtactggtactacatcgaacggttggattcaaaaggttttaaagagcttcgtaagagacacaattata  21147200                                          --------->YAB1                                     <---------YAB1                                  --------->ICU4                                  <---------YAB1  <---------ANAC58          <---------ARR14(2)  <---------ANAC58          --------->ARR14(2)                                            ---------->DOF2 ->YAB1                     --------->GLK1(2)         <---------YAB1                   --------->AHL20(2) -ATHB51                    <---------ARR11(3)   <----------DOF2                       <---------AHL20(2) -YAB1                  --------->ZAT6  ------->TEIL--------->YAB1          <---------MYB46(3)     --   gggttcttgctatgggagttatatgaacagtatctgatgatgaatcaaaacctttcatgatataactaaaaaaacaagttgttgcatatttaaaaaggaa  21147300                                                       <---------GLK1(2)         --------->GLK1(2)           <---------YAB1    --------->ARR11(3)        <---------GLK1(2)         ------->TEIL         <---------ARR11(3)                        ----    ---------->DOF2           ------->TEIL        ------>ZmHOX2a(1)       ---------->DOF2    <------- --------->GT1   <---------------AtSPL8     <<<<<<<<<TBF1       <---------TOE2(3)      <---------AHL20(2)   actggaaaaagaatctaaatgagtacaatatgtatgtatatgattcttcttcctctagattttgttgaggcaactacaaagtcttatatgaaattgatgt  21147400                                                  <---------------AtSPL3                --------->AHL20(1)                                                  --------------->AtSPL8                --------->ARR11(3)                                               --------->AHL20(2)                     --------->AHL20(1)                                               --------->ATHB12                       <---------AHL20(1)                                               <---------AHL20(2)                  --------->AHL20(2)                                               --------->ATHB51        ----------->GT1<---------AHL20(2)                                           <---------AHL20(2)          --------->ANAC58 <---------ARR11(3)                                     ----------->GT1              <------MYB83--------->AHL20(2)  ---                                    <---------TOE1(3)      --------------->AGL15   --------->AHL20(1)                                    --------->MYB59        <---------------AGL15--------->YAB1    <--                           --------->AHL20(2) <---------AHL20(2)  <------MYB46(1)  <---------AHL20(2) --->TEIL               --------->YAB1     --------->AHL20(2)   <--------P   --------->YAB1<---------AHL20(2) --TOE2(3)        --------->YAB1    <---------TOE2(3)<-----------GT1   --------->ANAC58 <---------AHL20(1)   atattttgcagaaatttcaattgtaaacataaaatgtttaggtaaaaaattatttgtacttctctagttggtaacgaaataaaaataaaatatttttttt  21147500                  ----------->TBP                  --------->AHL20(2)                  <---------AHL20(2)                ----------->TBP              <---------AHL20(2)              ----------->TBP              --------->AHL20(2)            --------->AHL20(2)            ----------->TBP            <---------AHL20(2)          ----------->TBP          <---------AHL20(2)          --------->AHL20(2)        --------->AHL20(2)        <---------AHL20(2)        ----------->TBP         --------->AHL20(2)      <---------AHL20(2)    --------->AHL20(2)                                                  <----      ----------->TBP       <---------AHL20(2)                                                  <----      --------->AHL20(2)    ----------->TBP                                          --------->ARR11(3)    ----------->TBP ----------->TBP            --------->YAB1                        --------->GLK1(2)    --------->AHL20(2)<---------AHL20(2)      <-------TEIL                        --------->AHL20(2)   <---------AHL20(1) --------->AHL20(2)      *TSS   <---------LBD16              <---------AHL20(2)   --------->AHL20(1) ----------->TBP     <---------TOE2(3)                --------->ANAC58    ------ ------>AHL20(2)<---------AHL20(2)        <---------TOE1(3)                --------->ANAC58    <----- -------AHL20(2)--------->AHL20(2)        <---------YAB1                 ---------->DOF2      -------   tttaatatatatatatatatatatataaatataaatatatgtttaagattcattatctggagagagagcctcgaagaaagcaaataaaatctagagaagc  21147600                              --------->SPL7                            <---------MYB52(1)                            <---------SPL7                           <---------DEAR3(2)                          --------->RAP2.6(2)                          <---------MYB46(3)                          --------->ATERF1(2)             <---------KAN4(2)                          <---------ATERF1(2)          ----------->GT1                       ------>NtERF2                  <---------TOE2(3)          --------->ARR14(2) -----ANAC58           <---------SPL7                 <---------TOE1(3)          <---------ARR14(2) -----ANAC58          <---------DEAR3(1)     <---------ANAC46            --------->ARR11(3) --->HSFC1(2)        --------->RAP2.6(3)     <---------ANAC58            <---------ARR11(3)  <------- ----HSFC1(2)      --------->ETT(2)          <---------ANAC58  --------->YAB1    <---------ARR11(3) -->GLK1(2)        <---------ETT(2)      <---------At4g35610--------->YAB1       --------->ARR11(3)   ttgtttctagggtttcgactctcgacggccggtacgatttttcaactgcttgttctaaggtataatcaaaatcgagttcttcagatattgaattcgattc  21147700                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                       <-----------GT1    <-------GAMYB                                                               <---------MYB52(1)         --------->At4g35610                                              <----------DOF2 <-------GAMYB              <---------MYB46(3)                                              <---------DAG2  --------->LBD16        <------MYB46(1) <----------DOF2                 <---------AHL20(2)          <---------ANAC46        <------MYB83 --GLK1(2)                       --------->AHL20(2)    XXXXXXXXXXXXXXXXXXXXX>MIR4221--------->MYB59   tctctttggtctctctcttctcttgttcttcagatttaaattcgatagctttttcattttcttccgttgaatttttcttgtttcattaggtctgttgaaa  21147800                                                      <---------TOE2(3)                                                      <---------TOE1(3)                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                  --------->CCA1(2)                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                                 <---------AGP1                                                 --------->AGP1           ----------->GT1                                                 <---------ARR11(3)     <---------ANAC46                                                 <-----------ARR10      <---------ANAC58                                                <---------CCA1(2)       <---------ANAC58                                              --------->HSFB2a(2)  <---------ICU4                                     <---------AHL20(2)         --------->YAB1              <----------DOF2  <---------WOX13(1)--------->ARR11(3)--------->YAB1             <---------ANAC58  <--------P  <-----------GT1    <-----------GT1             <---------ANAC58----------->GT1  <---------HSFB2a(2) <---------YAB1         <----------DOF2   ttgtagtttcttcttgctttgttttctcatatggttgattttttttttccagatctgaggtttttttcatcatagcttgaaaaaatccatactttctggg  21147900                                  <-----------RAV1(1)                               <---------ARR11(3)                               <---------ARR14(2)                               --------->ARR11(3)          <---------ANAC58                               --------->ARR14(2)          <---------ANAC58                     <----------DOF2                  ----------->GT1              <---------YAB1   --------->GLK1(2)      <---------MYB46(3)           --------->ICU4<---------TOE2(3)          <---------ANAC58                                <        --------->AHL20(2) --------->YAB1           <---------ANAC58                    ----------->GT1  <----------DOF2    --------->TOE2(3) <---------AtMYB61   <---------ANAC46   <---------YAB1        -   cttcctttgtataaatatgaaaactttaatgaaaatctgttgtggtatgttatgggttgtgacttgtgatgaattgaattttgaatatagttgtaaattt  21148000  Previous    Next  AGI:  At5g52030.1    Description:  TraB protein-related. similar to TraB family protein [Arabidopsis thaliana] (TAIR:AT1G05270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70404.1); contains InterPro domain Pheromone shutdown-related, TraB (InterPro:IPR002816) Range:  from: 21145355    to: 21147316    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g52040.1    Description:  ATRSP41 (Arabidopsis thaliana arginine/serine-rich splicing factor 41); RNA binding. Identical to Arginine/serine-rich-splicing factor RSP41 (RSP41) [Arabidopsis Thaliana] (GB:P92966;GB:Q9FJ88); similar to ATRSP35 (Arabidopsis thaliana arginine/serine-rich splicing factor 35), RNA binding [Arabidopsis thaliana] (TAIR:AT4G25500.1); similar to splicing factor-like protein [Vitis riparia] (GB:AAS00039.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 21147546    to: 21150847    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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