Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   <-                                           <---------ALFIN1                                        --                                          ------>ZmHOX2a(2)            --------->YAB1        <-------                    --------->TOE2(3)    <------ZmHOX2a(2)             <---------ICU4     <---------YAB1 ---ICU4 --------->ANAC55(2)            ------->TEIL                  <---------ATHB12 <---------YAB1 >ANAC58--------->MYB59                 --------->ARR14(2)   --------->LBD16           --------->ICU4 >ANAC58<---------TOE2(3)               <---------ARR14(2) <---------LBD16          --------->WRKY18(1)   tacaaagttttaggtattgatgccttaatggccattgatatggatccacatttctcaagtctccggagactaatcatcgagccacggtcatgatgctcgg  21121400                           <---------YAB1                       --------->YAB1                                       <------MYB83                      <---------YAB1                                        <------MYB46(1)                     --------->ARR11(3)                                    <---------AtMYB61                     <---------ARR11(3)                                 --------->ALFIN1         <---                    --------->YAB1                                    <---------ANAC46           <---  ---------->DOF2   -------->HAHB4                             <---------ANAC58                ------ -----MYB46(1)      <---------ICU4               <---------ANAC58     <---------ANAC55(1)      <----- -----MYB83        --------->ICU4                <---------ANAC58<---------ZAT6                <----- --------->GT1--------->TOE2(3)              <---------WOX13(1)<---------ANAC58               <------ZmHOX2a(1) --LBD16      --------->ANAC55(2)         <---------YAB1       <---------ANAC46  <---------REM1(2)   aaggtaaaacgctcatacttaatgatcatatgattcttcgagttgtgattgtcttgttgagacttgagtgttatgtgtaggtgtacatggggcaaaggat  21121500                      --------->HSFC1(1)  --------->HSFB2a(2) <---------HSFB2a(2)  <---------HSFB2a(2) --------->HSFB2a(2) ------HSFC1(2)       <---------HSFC1(1)         ------>ZmHOX2a(2)                               ---- ------HSFB2a(1) <---------DAG2           --------->KAN4(2)                                     <---- --->ARR14(2)    <----------DOF2        <---------YAB1                                     <---------ANAC55(2) ----GLK1(2)    <---------ANAC58      --------->YAB1          ---------->DOF2              --------->ANAC55(2) ----ARR14(2)   <---------ANAC58     <---------YAB1         <---------MYB52(2)          ------->TEIL   tcttcgagagagagagttgcttttcgagaagtattttctatgattattcgatcgtttctccaactaaagatgagaccagacaagtatatgaatatgtgat  21121600                                                      <---------YAB1                        --------->YAB1              <---------ICU4                --------->HSFB2a(1)                 --------->YAB1                               <---                <---------HSFB2a(1)        <---------TOE1(2)                         <---------At4g35610 ----->YAB1 ----------->GT1   --------->YAB1       --------->ICU4      ----------->GT1      --------- -----YAB1---------->DOF2     <---------ICU4       <---------YAB1---------->DOF2     <-------GAMYB   catcgtccaaagaaaagaaaattctaacataatcagtatatatcacatgttccatgattatttggaataaagaaggaaatttgattcagttgtggagtta  21121700                    <---------ANAC58                    <---------ANAC58          <---------MYB59                                                              --------->AHL20(2)         ----------------->AGL1                                                        <---------AHL20(2)        <---------PCF2                      ---------->DOF2                           --------->AHL20(2)     --------->ALFIN1        <---------AHL20(2)                --------->AHL20(2)<---------AHL20(2)   <-----------RAV1(1)      --------->AHL20(2)                 <---------AHL20(2)--------->AHL20(2) ------YAB1   <------------CBF           --------->YAB1     ----------->GT1 <------ZmHOX2a(2) -->GT1----------->TCP11(1) <---------AHL20(2)           --------->YAB1    <---------ARR11(3)    *TSS   ttcttatgtgggcctaaattgggcttgaaattaaatggtccgattataaagtttactaagcatagttaaataaactggatcatttaaattttattcagtt  21121800                                                                             --------->DAG2            <-------TEIL       <---------GLK1(1) <---------TOE1(3)          ---------->DOF2       <---------WOX13(1)      --------->GLK1(1) <---------TOE2(3)       <------ZmHOX2a(1)     --------->ATHB12   <---------SPL7      <---------ZAT6      ---------->DOF2          ---------->DOF2   cttaacttcattgattcattctgcgtcgttcggaactctgcaacgagagttagggtttatacagagcaaagagaaggagaaagcgaaaccaaaaatcgac  21121900                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                                  <---------YAB1                                 <---------ANAC46                               <---------ICU4                                 <---------ANAC58                              <---------YAB1                                 <---------bZIP60(2)                           --------->ICU4                                 <---------ANAC58                            --------->YAB1                        <---------O2                                  <---------ARR11(1)        <---------------------WRI1                                    <-----------ARR10      ----------->TGA1------->GAMYB       --------->KAN4(2)          <---------CCA1(2)        -------      ----------->HVH21 --------->O2   <-------GAMYB  ------>ZmHOX2a(1)      <---------ICU4   <------   attaatggctgacgaagattacaacgacgtcgatgacttggggttattctctcttcctctctctcggtttcatatctattcattattcgtgctcggattt  21122000                           <---------ANAC55(2)                           --------->ANAC55(2)    --------->GLK1(2)   --------->ARR14(2)   <---------GLK1(2)    <---------ARR14(2) -->GLK1(1)      --------->HSFB2a(2)     <---------ZAT6 ---GLK1(1)      <---------HSFB2a(2)     ----------->GT1                      <---------YAB1   caaaagattctatcttcttctcgacgaattcgtaatcgatttagagtaaattggattagttaatgtctaaattagcagtttttatagatgggtttcttcg  21122100                                --------->ICU4                      <---------ANAC46                      <------MYB83<---------GLK1(2)                      <------MYB46(1)                                      --------->ATHB12                     --------->MYB59  <---------YAB1      ----------->GT1 <---------YAB1        <---------ANAC58  <---------------AtSPL8        ---------->DOF2   <---------AHL20(2)        <---------ANAC46  <---------------AtSPL3  <---------TOE2(3)--------->TOE1(3) --------->DAG2        <---------ANAC58 --------->ZAT14          <---------TOE1(3)--------->TOE2(3)---------->DOF2   atgaaacgttgcttcgattttgttcggtatagtactgattctaatcgattttaaggtagaaagtagaaaccctaatttcattgagaaaaagctatttttt  21122200                                                                             --------->At4g35610                                                                             <---------At4g35610                                                                             <------NtERF2                                                                             --------->ZAT2                                                                             <---------ZAT2                                                                            ===================RAV                                                                            ----------->RAV1(1)                                                                           --------->ATERF1(2)                                                                           <---------ATERF1(2)                                                                           <-----------RAV1(2)                                                                    <------ZmHOX2a(1)                                                                  <---------TOE2(3)                                                              --------->CCA1(2)    ----------->RAV1(2)                   <---------ZAT6                            <---------ARR14(2)  --------->ARR14(2)           <----------DOF2    ----------->GT1                --------->ARR14(2)  <---------ARR14(2)   aaaactctatgagcttttctagtgaaacttgtgagtaaattgaagaaaatttgggctattgcagatatgaggatgagccagcagagcctgagattgaagt  21122300  Previous    Next  AGI:  At5g51940.1    Description:  DNA-directed RNA polymerase II, putative. similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT2G04630.1); similar to DNA-directed RNA polymerase, 14 to 18 kDa subunit [Medicago truncatula] (GB:ABN08140.1); contains InterPro domain RNA polymerase Rpb6; (InterPro:IPR006110); contains InterPro domain DNA-directed RNA polymerase, 14 to 18 kDa subunit; (InterPro:IPR006111); contains InterPro domain RNA polymerase subunit, RPB6/omega; (InterPro:IPR012293) Range:  from: 21121797    to: 21123173    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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