Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   <-                                                                                                  <--                                                                                                  ---                                         --------->SPL7                    --------->LBD16     ------                                         --------->ZAT14                  --------->ANAC55(2)  ------                                   <-----------GT1                        <---------ANAC46    -------                               --------->ARR11(3)                         <---------ANAC58    ------- ---------->DOF2               <-----------ARR10                 --------->KAN4(2)          <-------- ------>YAB1            <----------DOF2--------->ZAT14          <---------KAN4(1)          ------>ZmHOX2a(2) --->WOX13(1)        <---------ARR11(3)<---------ZAT14    --------->At4g35610             <------ZmHOX2a(2) --->YAB1         <---------HSFB2a(2)  <---------ZAT18    <---------At4g35610            <----------- -->MYB46(3)      --------->HSFB2a(2)  <---------SPL7     <---------ZAT2  <---------ANAC55(1)-------- -->RAV1(1)  <---------ATHB12  <---------ARR11(3)         --------->ZAT2  <---------ANAC58<----------   tcacaaagagaagaaatcatcgagaacttttaaaatctcaccgtactctcggctaatccaagctgaataatcccatccgtgttcgtaatccgatcgtacg  21017900   <---------MYB52(1) ----->ZmHOX2a(2) -----ZmHOX2a(2) -------ARR14(2) ------>ARR14(2) --->ANAC58 --->ANAC58                                       --------->At4g35610                              -- -->SPL1(2)         ------->GAMYB           <------MYB83               <------ZmHOX2a(1)          <-- -->SPL7          -------->P         --------->ARR14(2)   --------->ARR14(2)                  <------ -SPL7 <-----------GT1               --------->GLK1(2)    <---------ARR14(2)              <------ZmHOX2a(2) -------SPL14     ------>MYB46(1)    <---------ARR14(2)  <------ZmHOX2a(1)            --------->SPL7- ->SPL1(1)<xxxxxxxxxxxxxxxxsmallRNA(fl3)    <------MYB46(1)      <---------LBD16    <-----------HVH21 -----AtSPL3      ------>MYB83 --------->DAG2     <---------At4g35610  ==========================HOX2a_HOX2a   gatccgttttgactctctccaacccaatgtaataaggcgaatcggaaggtttagctacaggaactgctcgggaggagactcgaactcgtccgatcgagtt  21018000                                                                      <---------ANAC46                                                                     <------NtERF2                                                                   <---------ANAC46                                                               --------->SPL7                                                               --------->RAP2.6(3)                                                           <------ZmHOX2a(1)<---------TOE1(3)                                                    <------NtERF2  <---------DEAR3(1)                                                   <---------SPL7  --------->DEAR3(1)                             --------->ARR11(3)   <---------DEAR3(1)------>NtERF2  <---------ZAT2                          --------->DAG2          --------->ETT(1)<------NtERF2    --------->At4g35610                         ---------->DOF2        <-----------HVH21 --------->ATERF1(1)                    --------->LBD16           --------->MYB55(2) <---------RAP2.3(1)                   <---------ANAC58           <---------DEAR3(2) <---------ATERF1(1)      ---------->DOF2 ------->ANAC46    <---------ANAC55(2)      <---------MYB52(1) <---------ORA47(1)  <---------At4g35610 -------LBD16      <---------ANAC46        <-----------HVH21  <------ZmHOX2a(1)    --------->ZAT2 ---GLK1(1)        ----------->GT1  <--------P<---------MYB46(3)<---------DEAR3(1)<---------AGP1 -------->LBD16    <---------ANAC58--------->At5g28300   --------->ALFIN1   <---------TOE2(3)   cccgcgagagaagagattagtccgtgaaaaagttctcggtaagtccgtcgggtcggagggaggaggacggcgtcgtttaaggtagagctggagaaagtag  21018100                                                                                                   <-                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                       ------>NtERF2                                                           <-----                      ----------->HVH21                                                        ------                      --------->DEAR3(1)                                       --------->At4g35610---                      --------->RAP2.3(3)                                  --------->TOE2(3)  -------                     --------->DEAR3(2)--------->ANAC58       <---------------AtSPL3         <-------                     --------->RAP2.3(1)          <-----------GT1        -------->P          ------>NtERF2                    --------->At4g35610--------->ANAC58       <---------------AtSPL8         --------                    <---------At4g35610--------->ANAC46       --------------->AtSPL3        ---------        --------->ANAC58             <---------ALFIN1         --------------->AtSPL8        ---------        --------->ANAC46          --------->AtMYB61      --------->ANAC46------->TEIL       <--------        --------->ANAC58<------NtERF2--------->AtMYB61  <---------LBD16 <-----------GT1    <---------LBD16   aagagacaacaaggaatgagagagccgacgaagagaccaccacggccttgaattactccacggagaggtactatcaacctcatcggaaaatgctccgccg  21018200       <---------MYB46(3)       <-----------RAV1(1) -----NtERF2 ------ANAC46 ---NtERF2 -----LBD16 ---->At4g35610 ---->LBD16 -----At4g35610     <-------GAMYB ->NtERF2          <---------ANAC46         <-------GAMYB --NtERF2          <---------DEAR3(1)       --------------------->WRI1 ----ANAC46      ------>NtERF2             --------->MYB52(2) --->DEAR3(1)    --------->LBD16           <---------MYB46(3) ------>LBD16  --------->SPL7             --------->SPL7 -->ATERF1(1)  <---------LBD16           <---------MYB52(1) --ATERF1(1)   --------->ATERF1(1)      <---------SPL7 ->LBD16      <---------ATERF1(1)<-------TEIL                                <---------ICU4  <------- >DEAR3(1)    ------>NtERF2     --------->GLK1(2)                 ------------------------>ANAC81 >ANAC46    <---------ANAC58    --------->CCA1(2)                ---------->DOF2    ---------->DOF2<- -ALFIN1    <---------ANAC58   --------->ARR11(1)    --------->MYB52(1) *TSS--------->AHL20(2)   ----   cggagatagttgttgcctccggcgttgaagagagattcgagccgttcgttgagagtaacgaagttgaaaaagagtcgaataaatacaaaagttttgagat  21018300                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                                          <---------ARR14(3)                                                                                          --------->ARR14(3)                                                                                          --------->ARR11(3)                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)                        ------------>CBF                                         --------->AHL20(2)                       --------->ANAC46                                          <---------AHL20(2)                    <---------GLK1(2)                                           <---------AHL20(2)              <-----------GT1                                            ----------->GT1  --------->AGP1         --------->AHL20(2)                                           <------------CBF---------->DOF2         <---------AHL20(2)                                       <---------------AGL15   <---------ARR14(2)        <---------AHL20(1)                                        --------------->AGL15   --------->ARR14(2)        --------->AHL20(2)                                       <-----------------AGL2   <---------ARR11(3)        <---------AHL20(2)                                       <-----------------AGL3  --------->RVE1(1) --TOE2(3) <---------YAB1       ---------->ID1                 ===================================HOX2a_HOX2a -----------CBF     --------->ARR14(2)                         ====================================HOX2a_HOX2a ----->AHL20(2)     <---------ARR14(2)       ---------->DOF2   ------>ZmHOX2a(1)--------->ICU4  -----   aaattggcaaattatttttccatattcgcaatttgtctctacgttttaaaagttgctaaatagtccttctaatattggtgaaattatttaaagatcttca  21018400                            --------->YAB1                           --------->ICU4                         --------->YAB1                                               --------->HSFB2a(1)                         <---------ICU4                                            ---------->DOF2                        --------->ICU4                                           ----------->HVH21                   --------->ANAC46                                              ------->GAMYB                   --------->ANAC58                                            <---------At4g35610                   --------->ANAC58                                            --------->At4g35610                 ---------->DOF2                                       --------->ARR11(3)                --------->YAB1                                         <---------ARR11(3)  --------->HSFB2a(2)               <<<<<<<<<ARR2<---------ICU4                            <---------CCA1(2)    <---------HSFB2a(2)               <---------ATHB12                                   <---------ANAC55(2) <---------HSFB2a(1)             --------->WOX13(1)   ------>ZmHOX2a(2)          <---------ICU4  <---------WRKY12 ----->DOF2 --------->MYB46(3)<---------YAB1              <-----------GT1  <-----------HVH21  -------   aagttttgaaaacaacaatcaaagccataatcatgatccaaaacacagaagatgagcatttaaccattacatatatctgtcaactgaaaggttctataac  21018500                                                                                            ---------                                                                                            <--------                                                                                         --------->AHL20(2)                                                                                  ===================                                                                                  <------ZmHOX2a(1)                                                                                 ----------->GT1                                                         <---------YAB1        <---------LBD16                                                       --------->ATHB12        <-----------RAV1(2)                                                      <---------YAB1       <---------ARR11(3)                    --------->YAB1                    --------->ICU4       <-----------ARR10<--------                   <---------YAB1                  --------->ICU4          --------->GLK1(2)---------           <---------GLK1(1)                     ---------->DOF2           --------->ARR11(3)       - -->YAB1   --------->GLK1(1)                 --------->YAB1           ----------->GT1  --------->AHL20(2)   aaatctaaaatagaattccatatgataagaagaacatgaaaacacaattagaaaagatgattaatctttgaatcgaaaatctcaggaaaaaaaatatatc  21018600                <---------At4g35610                <---------ZAT2        <------ZmHOX2a(2)                                                   <-------MYC3        ==============================HOX2a_HOX2a                           ------->MYC3       <-----------HVH21                                                   --------->ANAC55(2)       --------->ARR14(2)                                                  --------->O2       <---------ARR14(2)                                                  <---------O2     --------->LBD16                                                       --------->TGA1a   <---------LBD16                                                         <---------TGA1a --------->DEAR3(1)                                                        ========================== >ARR11(3)      --------->ZAT2                                             <---------ANAC46 -ARR11(3)      --------->At4g35610                                        <---------ANAC55(2)     <- ==============HOX2a_HOX2a     <----------DOF2           ------->TEIL      --------->ANAC46        -- -AHL20(1)     <---------ATERF1(1)                  --------------------->WRI1         ----------->RAV1(1) >AHL20(1)    <---------DEAR3(1)<---------MYB52(1)  <---------AtLEC2   ------>ZmHOX2a(1)         ---- -------->DEAR3(2)             ------>ZmHOX2a(1)--------->GLK1(1)      <-----------HVH21       ------   agaccgccggatcagggctgctgctatgccatcctttagtgcaaggaggtatttccatgaactcgtcgaactccttcacgtgaacatcgcaacatttcca  21018700                                                                                <-----------GT1                                                                            ------->MYC2                                                               <---------WOX13(1)   ---------->DOF2                                           --------->ATHB12 <-----------HVH21  <--- =============bZIP_DOF                                      --------->ICU4  <-------MYC2         <--- --------ZAT14           --------->YAB1            <-----------HVH21   <---------MYB52(2)        <--- ------->ZAT14  --------->ARR11(3)                ----------->GT1    ---------->DOF2             <--- ----->ANAC46  --------->YAB1                 ---------->DOF2-------->HAHB4 ------->MYC3       <----- --->ZAT6   ----------->GT1              ---------->DOF2    <---------YAB1  <-------MYC3      <------   ctacacaaagaaaacagtgatattcaatagaaattcaaacagtgaaagaaaagggtcacaaaatgattgaacaaagaacgtgttacccctctcagtctgt  21018800  Previous    Next  AGI:  At5g51690.1    Description:  ACS12 (1-Amino-cyclopropane-1-carboxylate synthase 12); 1-aminocyclopropane-1-carboxylate synthase. Identical to Probable aminotransferase ACS12 (ACS12) [Arabidopsis Thaliana] (GB:Q8GYY0;GB:Q9C5W4;GB:Q9FLJ0); similar to ACS10 (ACC SYNTHASE 10), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT1G62960.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66821.1); contains InterPro domain Aminotransferases, class-I, pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839); contains InterPro domain Pyridoxal phosphate-dependent transfe Range:  from: 21014639    to: 21018272    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g51700.1    Description:  PBS2 (PPHB SUSCEPTIBLE 2); protein binding / zinc ion binding. similar to unknown [Populus trichocarpa] (GB:ABK94029.1); contains InterPro domain CHORD (InterPro:IPR007051) Range:  from: 21018435    to: 21020431    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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