Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            xxxxxxxxxxxxxxxx>smallRNA(s)                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                           xxxxxxxxxxxxxxxx>smallRNA(i)                           xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <---------ANAC46                  xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          <---------ANAC58                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          <---------ANAC58                  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <---------ZAT18                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->ZAT18          <---------------AGL15                       xxxxxxxxxxxxxxxx>smallRNA(s)    <---------TOE2(3)                       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 ======                     --------->ALFIN1          --------->ZAT14                           xxxxxxxxxxxx    <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ARR11(3) ------ ---------WRKY38(1)  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ANAC58       xxxxxxxxxxxxx ---------WRKY45   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------WRKY12  xxxxxxxxxxxxxxxxx>smallRNA(le3)--------------->AGL15      --------->ARR11(3) xxxxxx ------ZAP1      xxxxxxxxxxxxxxxx>smallRNA(si3)<---------ZAT14   <---------ANAC58     ------->MYC3 ---------HVH21  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ---------->DOF2    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ->HVH21  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ZAT18  <---------MYB46(3)    <-------MYC3  <   ggtcaactcgtgatcaagaagacgagtggcctaggctagtgacttccattgcacttaaaggaagggtgcttagcctaaggtcttcccatgtggaagagcc  21014100                                     ------>NtERF2                                     <---------At4g35610                                    --------->RAP2.3(3)                                    --------->DEAR3(1)                                    <---------ATERF1(1)                                   --------->ATERF1(1)                               xxxxxxxxxxxxxxxxx>smallRNA(le3)                               xxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <-----------RAV1(1)   xxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->ATHB51         xxxxxxxxxxxxxxxxxxx>smallRNA(l2)     <---------ICU4           xxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->ATHB12        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ICU4           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   --------------->AGL15    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                          <---------------AGL15    <---------YAB1           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <-----------------AG ====================RAV    <---------SPL7 -------->P                            ----------------->AGL3 xxxxxxx>smallRNA(le3)     <---------ANAC58------>MYB46(1)                       <-----------------AGL2 ----->RAV1(2)   --------->ALFIN1--------->ANAC46                                <-----------------AGL3 xxxxxxxx>smallRNA(le3)    <---------ANAC58------>MYB83                     --------->ATHB12 xxxxxxxxxxxxxxxxx>smallRNA(le3)<---------LBD16                            <---------AHL20(2)-------- -----------TGA1<------NtERF2xxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------YAB1    <---------TOE2(3)   tgcgtcattatttgtggcagagggggtttgcgttcgcgcagcccctaccattctcagtcttcaaatgtttctattatttcattgctaattttggttattc  21014200     <---------YAB1                                                                               <--   <----------DOF2                 ------>ZmHOX2a(1)      ------->TEIL   ---------->DOF2     --------   <---------DAG2   <---------ALFIN1     <---------ARR14(2)          ---------->DOF2      ------>ZmHOX2a(2) ->KAN4(2)        ----------->RAV1(1)    --------->ARR14(2)   ------->TEIL     <---------ANAC46  ----   cttcacttttattgttcttgcaacacattctaaaatccttatggatatgtagtatggacgaatgtatgctataaagaaagggcgagtattgatccatgac  21014300                                               <------MYB83                                               <---------MYB46(3)                                               <------MYB46(1)                                              --------->MYB55(2)                                              --------->MYB111(2)                                              --------->MYB46(2)                                              <---------DEAR3(1)                                              <---------MYB46(3)                                              --------->MYB111(1)                                  <-----------------AGL3     <---------ARR14(2)                   <--                                  ===================================================================      ---------->DOF2          ---------->ID1 <---------AtMYB61                                 ----- -------ALFIN1    <---------AHL20(2)          --------->ALFIN1                                 <----- --->HVH21        --------->AHL20(2)         <---------MYB55(1)                          --------->ATHB12 ----->MYB46(3)  --------->AHL20(2)          <--------P <---------ANAC46               <---------WOX13(1)   ccatccctaaaagtattcatttattttttgtttggctctcttaatgggttggtggaatgtgtgtatatgagataaacactcttctattgaatgatttatg  21014400                                                                           <-------TEIL                           <---------------AGL15                        <---------YAB1                           ----------------->AGL1                     --------->YAB1                           --------------->AGL15                     --------->ICU4                          ----------------->AGL1<---------ANAC58     <---------ATHB51        ---------->DOF2   ----------------->AGL2<---------ANAC58  <---------YAB1 -------WOX13(1)      <---------ZAT6      <---------YAB1         ------------>CBF ==========================================MADS_MADS           <------ZmHOX2a(2) ---->ATHB12    --------->ANAC58        --------->YAB1        --------->ARR11(3) ----YAB1       --------->ANAC58     --------->GLK1(1)        <---------ARR11(3)   attgaattacaaaagaagacgctagtgttcccaaatgagaaatcaaaattgggtttggacttaagatcacaattatgttcatactctatatcaaaaactc  21014500                                  ----------->GT1                                 --------->ANAC58                                 --------->ANAC58                               --------->MYB52(1)<---------TOE2(3)                       ------------>CBF        --------->CCA1(2)                   <---------RVE1(1)          *TSS                                         --------->YAB1                   <---------CCA1(1)   <---------ICU4                                      <---------ICU4                  <---------ARR11(3)   --------->YAB1                                     --------->ICU4                  --------->ARR11(3)  --------->ICU4                          <---------------AtSPL8         ----------->HVH21  --------->YAB1--------->YAB1                    <---------ANAC46       --   caaatgttgatatgacaagagatatttcaatcgaaacggaataatgaagataagattaatggattagattgtgagattaagtggaacagagaatgatgac  21014600                                              --------->ANAC58                                             ------>NtERF2                                  <------MYB46(1)------>MYB46(1)                                  ----------->GT1------>MYB83                                  <------MYB83--------->ANAC58                                 --------->MYB111(2)                        ------>ZmHOX2a(2)============================================bZIP_DOF                      <---------AGP1     --------->bZIP60(2)                      --------->ARR11(3) --------->TGA1a                      <---------ARR14(2) --------->ANAC58                      <---------ARR11(3) --------->O2                 <---------ANAC46--------->MYB46(2)              --------->YAB1     --------->DAG2   --------->ARR14(2) --------->ANAC58      --------->ARR14(2)    ===============================================bZIP_DOF    ------->TEIL              --------->At4g35610    ---------->DOF2--------->ALFIN1      --------->ANAC46      <---------ARR14(2)       --------->MYB59 ------->AHL20(2)<---------bZIP60(2)----------->HVH21    <---------TOE2(3)---------->DOF2<---------At4g35610   ataaaataaagtcaacatgaagtggatctacaagtttggtgacacgacaccaaatggtttaggtgaatcttcatgagaaagaagaatagttagctctaat  21014700           <----------DOF2        --------->ANAC58        --------->ANAC58        --------->ANAC46      <---------ALFIN1 --------->ANAC58                                    --------->WRKY38(1) --------->ANAC58                                   <---------WOX13(1)                          ----- --------->ANAC46                             <---------ARR11(3)                    ---------->DOF2 --------->bZIP60(2)                      --------->ANAC46             ---------->DOF2          ----- --------->O2--------->AHL20(2)         --------->ZAT6      <---------ATHB12   --------->AHL20(2)   accacgacacacgctttaaattctaagtggttttagttactaacacaacatctcattgactaatcaaacccataaaagcctataaataaagagaacaacg  21014800          --------->MYB46(3)     <-------TEIL    --------->ARR14(1)    --------->CCA1(2)   <---------ARR14(2)   --------->ARR14(2)   --------->ARR11(1)                       --------->AtMYB61  --------->CCA1(2)                         <---------ALFIN1                                       -- <---------------AtSPL8                    --------->MYB46(3)                                     --- ---->TOE2(3)                      <----------ID1                                <----------DOF2 <--- ---->TOE1(2)                  ---------->DOF2                          ------>ZmHOX2a(1)       -----   taagagatacgaacaaatgtctgatatggaaccaaaagaaacaaaaccacctcgaaaacaattgagacagcctccttctgttcctttcatttgggaagag  21014900                                                                           ------>MYB83                                                                       ------>NtERF2                                                                      <---------ALFIN1                                                                      --------->DEAR3(1)                                                                    --------->LBD16                                                                    ------>NtERF2          --------->LBD16                                          --------->ANAC58         --------->HSFB2a(2)                                       --------->ANAC58            ------         <---------HSFB2a(2)             <---------DAG2            --------->ANAC46      ---------->DOF2     <---------ANAC58                    <----------DOF2         <---------ATERF1(1)    <---------MYB52(1)     <---------ANAC58              --------->ANAC58           <---------At4g35610     --------->LBD16 ---->NtERF2                       --------->ANAC58           --------->At4g35610    --------->LBD16 ------>ZAT18               --------->TOE2(3)              ------>ZmHOX2a(1)        <---------LBD16 ------RAP2.6(2)            --------->TOE1(3)             <---------ALFIN1 ------>MYB46(1)  <-------- ---->At4g35610--------->YAB1      --------->ANAC46     ------>ZmHOX2a(1)--------->AtMYB61  <--------   cggcctggcttccccaagaagaattggcaaccttcactagccacttttgtgccttctcctcctccgcttccgccacctatcccagtcccggttaagctgg  21015000  Previous    Next  AGI:  At5g51680.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO49755.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66820.1) Range:  from: 21014546    to: 21016133    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g51690.1    Description:  ACS12 (1-Amino-cyclopropane-1-carboxylate synthase 12); 1-aminocyclopropane-1-carboxylate synthase. Identical to Probable aminotransferase ACS12 (ACS12) [Arabidopsis Thaliana] (GB:Q8GYY0;GB:Q9C5W4;GB:Q9FLJ0); similar to ACS10 (ACC SYNTHASE 10), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT1G62960.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66821.1); contains InterPro domain Aminotransferases, class-I, pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839); contains InterPro domain Pyridoxal phosphate-dependent transfe Range:  from: 21014639    to: 21018272    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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