Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <-----------HVH21   <---------ANAC46   <---------ANAC58   <---------ANAC58 <---------ANAC58 <---------ANAC58 ---------AtMYB61                                         --------->MYB52(1)              <------ZmHOX2a(2) --------DOF2         --------->ANAC58        --------->ATHB51                            <---------YAB1 ------ANAC58         --------->ANAC58        --------->ATHB12                           --------->ARR11(3) ------ANAC58     --------->YAB1             --------->ICU4              --------->YAB1  <---------ARR11(3) -MYB52(1)       <---------ZAT6             <----------DOF2       ----------->GT1    ---------->DOF2 --DOF2        ----------->GT1   <----------DOF2  <---------MYB46(3)     --------->AHL20(2)--------->ATHB12   ctttggtgtgtcatagatagtgataagaaatacctctttttttgggcattatttgttgacaaacgatatagaaaattataaacaaaataaagatcattgg  20997000                                                                                                -----                        --------->ARR14(2)                                                      <----                        <---------ARR14(2)                                                     ------          >>>>>>>>>>WRKY38                                                                     <-----          >>>>>>>>>>WRKY43                    <-------TEIL                                   --------          >>>>>>>>>>WRKY26               ---------->DOF2    ------>ZmHOX2a(1)             --------->bZIP60(2)         --------->WRKY38(1)          --------->YAB1    <---------ARR14(2)                --------->ANAC46         --------->WRKY12          --------->WOX13(1)   --------->ARR14(2)              <---------ALFIN1     --------->ATHB12<---------ANAC46<---------ATHB12   <---------ARR11(3)           ------->TEIL   -   aaaaacatcatttgaccaaagatgtgtatatgtgtcccaatcagaaagttcataacaagttcctctcttctcttctcaattcttatgcatccacatcatc  20997100                                                                                                   <-    <---------AHL20(2)                                                                             <-   --------->AHL20(2)                                                                     <---------GLK1(1) ---->ATHB12                                                                             --------->ARR14(2) -----ICU4                                                                               <---------ARR14(2) --->ICU4                            <---------AHL20(2)                               <------------MYB.PH3(1) ----YAB1                            --------->AHL20(2)<---------DAG2               <-----------GT1-- ->YAB1   <----------DOF2        --------->AHL20(2)    <----------DOF2              --------->MYB52(1) -------->ATHB12                 <---------AHL20(2) <-----------GT1           <-------TEIL--------->GLK1(1)   attgatttaatgcttttaaaaacagaacattacatttatttttttaaaaatgtattactttttggacaatacaagtttgatacatataacggatttcgca  20997200                                                                                ---------->DOF2                                                                          ----------->GT1 <----------                                                                          --------->ANAC55(1)                                                                      ------>MYB83     --------->ARR14(2)            <----------DOF2                               <-------TEIL------>MYB46(1)  <---------ARR14(2) --------ARR11(3)                           ---------->DOF2         <---------MYB59 ----------->GT1 --------AHL20(1)                           --------->MYB52(1)---------->DOF2  --------->ICU4 ------->AHL20(1)               --------->LBD16   ---------->DOF2   --------->AtMYB61  ---------->TaMYB80   aaatatttcatgttctttttgcaaacaaataatccccaaaaaaaactaaaggaaaagaaattcgtaaagaccaaactcgtaataaagagtatatactgtt  20997300                                                            <---------TOE2(3)                                                    <---------ARR11(3)                           --------->AHL20(2)  <---------ARR14(2)                    <---------MYB59            --------->ARR14(2)                    --------->TOE2(3)         ===============HOX2a_HOX2a                    --------->TOE1(3)         <------ZmHOX2a(1)                  ------>MYB83              <---------TOE1(3)                  -------->P                <---------TOE2(3)                                   -----                  ------>MYB46(1)       <----------DOF2<----------DOF2                          -----                --------->AtMYB61   <---------MYB52(1)------>ZmHOX2a(2)                       ------- -GT1          --------->MYB46(3)  --------->LBD16  --------->ARR11(3)              <------------CBF   tccccttaaaaaaaaaaaccaacctaaaattaaaacccgtgggtttaaggatttgatcttttaatgttcacaaaatcgagaccctaaattgctctcacac  20997400                                                               <---------MYB52(1)                                                              --------->LBD16        <---------ANAC46                                                             <---------HSFB2a(2)    ------>NtERF2                                                          --------->GLK1(2)         <------NtERF2                                                          --------->ARR14(2)       --------->DEAR3(1)       --------->ARR14(2)                 --------->GLK1(2) <---------LBD16       <---------RAP2.6(2)       <---------ARR14(2)                *TSS            --------->ARR14(2)      <---------LBD16    ------------>CBF      <---------------AGL15          <---------ARR14(2)     <---------ANAC58 ---->ANAC58              --------------->AGL15          <---------GLK1(2)      <---------ANAC46 ---->ANAC58      ------------>CBF    --------->YAB1   <---------TOE1(2)   ----------->ARR10 -->ZAT6<---------ATHB12------------>CBF <---------GLK1(2)<---------ARR14(2)    <---------ANAC58   tcacttcccaatcttcttagttcaatttcaatttttagaattagaatctctgaatcccagattccggtagagaagatgagtttcgcggcctataagatga  20997500                 --------->HSFB2a(2)                 <---------HSFB2a(2)               <------NtERF2              ------>NtERF2             <---------DEAR3(1)                                                                 <----             <---------ANAC46                                                                   -----             --------->DEAR3(1)                                                               <------            --------->RAP2.3(1)                                                             ---------           --------->LBD16                                                             <---------MYB52(1)          --------->ATERF1(2)                                                <---------MYB52(1)------         --------->DEAR3(2)                                                <---------YAB1   <--------        ------>MYB46(1)                     <---------ALFIN1            --------->GLK1(2)  <---------YAB1        ------>MYB83                    <-----------GT1                --------->ARR14(2)  --------->ICU4        --------->MYB52(1)      ------>NtERF2------>MYB83              <---------ARR14(2)--------->YAB1        -------->P              --------->LBD16                        <---------GLK1(2)<-------TEIL      <---------SPL7          <---------LBD16------>MYB46(1)   --------->ANAC46      <---------ANAC58     <---------ANAC58      <---------ANAC58--------->MYB46(3)  --------->ANAC58      <---------ANAC58     <---------ANAC58      <---------ANAC58<---------MYB55(2)  --------->ANAC58   <-----------GT1   tgcattggcctaccggcgtcgagaactgtgcttccggctatatcacccactctctctccgattcaacgctacagattccgattgtttccgttcatgatga  20997600                                                                       <---------YAB1                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)                                                                     --------->RVE1(1)                                                                     --------->CCA1(1)                                                                     --------->GLK1(1)                                                                    --------->ARR14(2)                                                                --------->LBD16                                                                <------NtERF2                                                               --------->RRTF1(3)                                                               --------->RRTF1(2)                                                               --------->RAP2.3(3)                                                               --------->RAP2.3(2)                                                               --------->DEAR3(1)                                                               --------->RAP2.6(2)                                                              --------->RRTF1(1)                                                            --------->DEAR3(1)    --------->At4g35610                                     ------->GAMYB    <---------At4g35610                                     --------->ANAC46    <---------ZAT2                                         <------------AtMYB77    --------->ZAT2                                         --------->DEAR3(2) -----ARR11(3)                                             --------->MYB46(3) ---->ARR11(3)       ------>ZmHOX2a(1)             ----------->GT1  <---------ARR14(2) ---YAB1            --------->TOE2(3)         <---------ALFIN1--------->RAP2.3(1)        <---------MYB52(1) >YAB1        <---------MYB59                 --------->MYB52(1)------>NtERF2   --------->ALFIN1 --->YAB1  --------->ZAT18             ------>ZmHOX2a(1)  <---------At5g28300  <---------------AtSPL8 -ICU4     <---------ZAT18             <----------DOF2   <-----------GT1      <---------ANAC46   tattgaagctgagtggcctaatcctaaacgaggtattggtcctttgcccaacgtcgttataaccgccgcaaatatccttgaggtgtacatcgttagggct  20997700                                    <---------ANAC58                                    <---------ANAC58                                   --------->ZAT2                            --------->GLK1(2)                                                     <--                           --------->GLK1(1)                                                    -----                          <------ZmHOX2a(1)                                                     <----                        <---------TOE2(3)                                                       =====                    <---------ZAT2 <---------HSFC1(2)                                          ======                    --------->At4g35610      <---------ANAC58                                  ======                    <---------At4g35610   ---------->CDC5      <------MYB46(1)                 <-----                  <------ZmHOX2a(1)--------->HSFC1(2)     <---------TOE2(3)                    <-----               <---------LBD16  --------->LBD16   --------->ALFIN1                             <-----               <-----------RAV1(2) --------->HSFB2a(1)    <---------YAB1                       ------          <---------ARR14(2)<---------ARR14(2)  <---------ANAC46 <---------ANAC46              ------          --------->ARR14(2)--------->ARR14(2) --------->ALFIN1<------MYB83                    <-----          <---------KAN4(2)<---------GLK1(1) <---------ANAC58 <---------AtMYB61                ------   <------ZmHOX2a(1)--------->ZAT2 <---------ZAT2 <---------ANAC46                    <---------ZAT2   caagaggaagggaatactcaggagctgaggaatccgaagcttgctaagcgtggtggagttatggatggtgtctatggtgtttctctcgagctcgtgtgcc  20997800              <-------GAMYB             <---------MYB46(3)       <---------ANAC58       --------->ANAC55(2)       <---------ANAC55(2)       <---------ANAC58       <---------ANAC46       <---------ANAC55(1)      <-------TEIL  --------------->AtSPL3  <---------------AtSPL3  <---------------AtSPL8                                  <----------DOF2 -------YAB1 --------->MYB52(2)               --------->MYB59 ---------->AGL15                             <---------------AtSPL8 -----------AGL15                       --------------->AGL15 =======================================================MADS_MADS =======================================================MADS_MADS ========================================================MADS_MADS                                 -- ------------AGL2                       <---------------AGL15                 <------MYB83         -- ------------AGL1                      <-----------------AG                   <------MYB46(1)      -- ------------AG                        <-----------------AGL1               <---------WOX13(1)   <--- ----------->AGL1                      ----------------->AGL2             --------->ATHB12  <------MYB46(1) ----------->AGL2                      ----------------->AGL3    ----------->HVH21          <-------- ------------AGL3                      <-----------------AGL3    ----------->TGA1           <------MYB83 ----------->AGL3             ------>ZmHOX2a(1)     <----------DOF2      <---------YAB1    <---------TOE1(2)   attataggtacgtgtttgttgacaattacctcctaaattactccaattttggtactttgactttgaagtgacgatgtgattggtattggattgtaggttg  20997900  Previous    Next  AGI:  At5g51660.1    Description:  CPSF160; nucleic acid binding. Identical to Probable cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis Thaliana] (GB:Q9FGR0); similar to DDB1A (UV-damaged DNA-binding protein 1A) [Arabidopsis thaliana] (TAIR:AT4G05420.2); similar to DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) [Arabidopsis thaliana] (TAIR:AT4G21100.1); similar to DDB1A (UV-damaged DNA-binding protein 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G05420.1); similar to Probable cleavage and polyadenylation specificity factor subunit 1 (Cleavage and polyadenylation specificity factor 160 kDa subunit) (CPSF 160 kDa subunit) (GB:Q7XWP1); similar to predicted pr Range:  from: 20997441    to: 21006653    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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