Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->ARR11(3)                                                 --------->ARR14(2)                                                 --------->KAN4(2)                                                 <---------ARR14(2)                            --------->MYB46(3)   <---------ARR11(3)            --------->GLK1(2)           <---------ARR14(2)            <---------ARR14(2)          --------->ARR11(3)                                     ------            --------->ARR14(2)         <---------CCA1(2)    <---------YAB1              ----------->GT1            --------->ARR11(3)    <---------CCA1(2)   ---------->DOF2                 <----------DOF2            <---------ARR11(3)  <---------ALFIN1<---------KAN4(1)                  <-----------GT1---         --------->AHL20(2)--------->SPL7       <---------GLK1(1)        --------->MYB52(1)   <------   aaatttttgaataaaatctgcaaaattcgaacccccatatcaaatcttgaatatcccaaagtataattcagtagaaaacggagatttactttgtaaatca  20924100                             <---------AHL20(2)                            --------->AHL20(1)                            <---------AHL20(1)                        <---------YAB1                      -------->HAHB4                      --------->YAB1                      --------->ATHB51                   <---------ICU4<---------AHL20(2)        ----------->HVH21 <---------AHL20(2)        <---------YAB1<---------ICU4     --------->GLK1(2)<---------AHL20(2)   <---------CCA1(1)  <--------HAHB4   <---------RVE1(1)  -------->ATHB1  --------->ARR14(2) <---------YAB1  --------->ARR11(3) <---------ATHB51  <---------ARR11(3) --------->ICU4                       <-------TEIL --->YAB1       --------->ANAC55(2)          <---------TOE2(3)                       --------->DAG2 ------->DOF2   <---------ANAC55(2)         <-----------GT1                     ----------->GT1 ---ATHB12 --------->ZAT6--------->AHL20(2) --------->MYB52(1)         --------->GLK1(1)   taaagatattctgacagtacataattattatatatttaagtcggattaacgatgtttagcttcatttttcaagaattctaacatgaaaaattggatatat  20924200                                                                            --------->ANAC46                                                                            <---------ANAC46                                                                            <---------ANAC55(2)                                                                            --------->ANAC55(2)                                                                        <----------DOF2                                                  --------->ZAT18   <---------ZAT18              <---                        ----------->GT1           <---------ZAT18   --------->ZAT14              <---                      <------------CBF           <---------ANAC58   --------->SPL7               <---         --------->GLK1(2)                       <---------ANAC46------->GAMYB ---------->DOF2  <----        --------->ARR14(2)                 <---------HSFB2a(2)   <---------ANAC58         <----------        <---------ARR14(2)             <-------GAMYB  <----------DOF2   <---------DAG2   --------->ATHB12        <---------GLK1(2)       <------------CBF <---------ANAC58<---------ANAC58<---------TOE2(3)   ataggtctcagattcttacatgtgaattgtgaaatattgtgagttggagaagcgtgcttttgttcaaccgtgcgctttacgtaaaggtatgtcattggtg  20924300                                           --------->LBD16                                          ----------->GT1                                   --------->TGA1a                             <---------ARR11(3)                     --------->At5g28300  <---------ANAC55(2)                    ----------->GT1<---------TGA1a                    <---------ZAT6 ===========================bZIP_DOF                  <---------At5g28300----------->HVH21         <---------AHL20(2)  --------->ARR11(3)       <----------DOF2      --------->RVE1(1) ------ANAC58    <-----------GT1   --------->ANAC55(2)  <---------YAB1                       <------- ------AtLEC2<---------AHL20(2)    <---------O2    ---------->DOF2    <-----------TBP      ---------- ------ANAC58--------->AHL20(2)    --------->O2------->TEIL   --------->ICU4        <-------TEIL ---TEIL --------->AHL20(2) --------->CCA1(1) <---------CCA1(2)<---------ICU4    <---------HSFB2a(1) --CBF ======================================bZIP_DOF--------->ICU4 <---------ANAC55(2)<---------MYB52(1)   catgggagcctttaattttttactgtaaaaatatctcaagtgacccgtgaatctaaagattataaagattacatatatagagaaggctcgtttgtcttta  20924400                                            <------------CBF                                           <---------ICU4                                           --------->ATHB51      --------->TGA1a                                           --------->ATHB12      --------->O2                                           -------->ATHB1        ====================================                                          <---------ATHB51       ====================================                                          --------->ICU4         <---------O2                                   <---------WRKY18(1)  ---------->DOF2                                  ----------->HVH21  ----------->TBP           ------------>CBF     <---------ANAC58     <---------AHL20(2)                    ---------- <-------TEIL  --------->ICU4   <---------ANAC58   ----------->TBP    ------------>CBF<---------At4g35610 ---DOF2  --------->ANAC58 <---------ICU4 <---------YAB1===================bZIP_DOF   --------->At4g35610 >ID1     --------->ANAC58<-------TEIL ------------>ATHB5   <----------ID1    ------>ZmHOX2a(1)------   atatacataaactagcaatatttgaatattcatggcatgaccccattattgctatataaaaagagccaagtgtccaattcctgatttcagatgaagtaaa  20924500      ------>MYB46(1)                                           ----------->HVH21    ------->GAMYB                                           <------ZmHOX2a(1)  --------->ANAC58                                         <---------ZAT18  --------->ANAC58                                 <---------ARR11(3)                    --------->ANAC46 =====bZIP_DOF                                     --------->ARR11(3)          --------->ANAC58 ===========MYC_MYB                              ----------->ARR10             --------->ANAC58 ->GT1------>MYB83         ============================HOX2a_HOX2a <---------ANAC58      --------->ANAC58 ---->DOF2                 ------>ZmHOX2a(2)    <------ZmHOX2a(1)  <---------ANAC58      --------->ANAC58   agacaaccaaatatgagtttatgctctgatctcactgagaaattagacgaggagattttagaggacttgacgtccaatgtgaagcaaatacaagacaacg  20924600                 --------->ANAC55(1)--------->GLK1(2)                      <----------DOF2        --------->ARR14(2)          <---------ARR14(2)                  <---------ARR11(3)        --------->ARR11(3)          --------->ARR14(2)                  --------->ARR11(3)        <---------ARR11(3)          <---------ARR11(3)              ---------->DOF2                --        <---------ARR14(2)          --------->ARR11(3)      --------->GLK1(1)                   -----      ----------->ARR10             <-----------ARR10       <---------At4g35610         --------->HSFB2a(1)     <------ZmHOX2a(1)             <---------ARR14(1)       --------->At4g35610         <---------HSFB2a(1)   tattggaggagatactcacacttaatgctaacacagagtatcttcgacgttttctccatgggagctctagtaaagagcttttcaagaagaacgtccctgt  20924700          <------ZmHOX2a(1)                                                                   <------          ============================HOX2a_HOX2a                                             <------      <---------TOE2(1)                                                              --------->GLK1(1)      <---------TOE1(1)                                                             <---------GLK1(2)     ------>MYB46(1)                  --------->ANAC58                              --------->ARR14(2)     ------>MYB83                 <-----------HVH21                                 <---------ARR14(2)   --------->TOE2(2)           <---------ANAC58                                 <---------LBD16------   --------->TOE1(2)           <---------ANAC58 --------->ZAT18                --------->MYB52(1) --------->HVH21     <----------DOF2  --------->ANAC58                   ------->GAMYB <------------- ---->ALFIN1  ----------->HVH21------>ZmHOX2a(2)<---------ZAT18        -------->P --------->LBD16 ---   ggtgacctacgaggatgtgaagccttttatcgatcgtgtcacgaatggagagccctctgatattatctctggcaaccccattaccggattccttctaagg  20924800    <----------DOF2    <-----------GT1 <-----------GT1   <----------DOF2                             <---------MYB46(3) ---TOE1(3)       <---------ANAC58                             ----------->GT1 ---TOE2(3)    ------>ZmHOX2a(1)                           --------->ATHB12 ----->GT1    <---------LBD16<----------DOF2              <---------YAB1 ----AGL1    ----------->RAV1(2)                      <----------DOF2       <---------ATHB12 ------->TaMYB80  <---------ANAC58                    <---------DAG2<---------YAB1       <---------YAB1   tatatacttttcatttcctggcttttttcttcttttcaaaaattgtattagagcaactttatcattggttattatacaatcaatgtgagtgatgttagaa  20924900                                                 --------->LBD16                                                --------->HSFB2a(2)                                             <---------ARR14(2)                                            --------->HSFB2a(1)                                       <---------HSFB2a(2)                                       <---------HSFC1(1)                                       --------->HSFC1(1)                --------->TOE2(1)                                       --------->HSFB2a(2)               --------->TOE1(1)                                      <---------LBD16             <---------HSFC1(2)                                    <---------ARR14(2)            --------->HSFC1(2)               <----------DOF2      <---------AGP1   <------ZmHOX2a(1)   --------->ANAC46             --------->ZAT18    <---------ZAT14 <---------HSFB2a(2)     ------>ZmHOX2a(1)      --------->ARR11(3)        --------->ZAT14<---------LBD16  --------->ARR11(3)                  <    <---------ZAT6          <-----------GT1 <---------HSFB2a(1) <---------ARR11(3)                 --   actctagagataatgtgctctaatggtttttcactgtagttctggaacatccggaggaaaacagaagatgtttcctcgtaacaacaagtacttggaaaac  20925000  Previous    Next  AGI:  At5g51470.1    Description:  auxin-responsive GH3 family protein. similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT1G48660.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT1G23160.1); similar to PBS3 (AVRPPHB SUSCEPTIBLE 3) [Arabidopsis thaliana] (TAIR:AT5G13320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68714.1); contains InterPro domain GH3 auxin-responsive promoter (InterPro:IPR004993) Range:  from: 20924513    to: 20926566    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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