Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <------NtERF2                                                                   <---------RAP2.6(3)                                                        <-----------GT1     <----------DOF2              --------->ANAC46                       --------->MYB111(1)   <---------ICU4   <---------------AtSPL3                <---------At4g35610      --------->RAP2.3(3)              <- ->ZAT6    <---------WRKY12              --------->At4g35610      --------->RAP2.6(2)            <---   aagaagtggtatgtcaacgagacgatgagcaagatgaaatatcagctcttgtgagtagttacctcgggccgtcatcatcttttcttcatcgctcaagtct  20790000              <---------ARR14(2)              --------->ARR14(2)              --------->ARR11(3)         --------->LBD16        --------->LBD16       ----------->RAV1(2)       <---------LBD16     ------>ZmHOX2a(2)                      <------ZmHOX2a(1)    <------ZmHOX2a(2)                     --------->MYB59                                           -   <---------ARR11(3)                   <<<<<<<<<MYB98                                             --   --------->ARR11(3)                 <------MYB83                                                 --   --------->ARR14(3)                 <------MYB46(1)                                              <-   <---------ARR14(2)                <---------MYB46(3)                                           <--   --------->ARR14(2)               <---------ANAC46                 ----------->RAV1(2)         ----   <---------ARR14(3)               <--------P                       --------->At4g35610        -----  <---------HSFB2a(1)          <---------ZAT2                       --------->ARR11(3)         <-----  --------->HSFB2a(1)          ----------->RAV1(2)                ------->TEIL    <-------TEIL------- --------At4g35610           <---------ALFIN1         <---------ARR14(2)     <---------ALFIN1 ------- --------RAV1(2)       <---------ALFIN1<-------GAMYB  --------->ARR14(2)    <------NtERF2    --------   cagaagatcccctgaatatatggttccacttccacctggtgggttaggaagaagtgtatatgcatatgaacatctggccccaaattcatactctccaggt  20790100 ---------->HVH21 ------->ANAC58 ------->ANAC58 --------ANAC55(2)           ------>ZmHOX2a(1) -------LBD16         <---------ZAT14 ----->MYB52(1)       --------->ZAT14 ------>HVH21         <---------ZAT18 ------HVH21        --------->ZAT14                 <-----------GT1 -->ANAC46       <---------ZAT14              ------------>AtMYB77                        --------->At4g35610 -->bZIP60(2)    --------->ZAT14              ----------->RAV1(1)                         ----------- ->LBD16       --------->ANAC46              --------->MYB46(3)    ---------->DOF2   <-----------GT1   cacggacagagacatccactacagtactctcctccaattcatggacaacaacagttaccatatggtttacaaagggtttacagacattcaccatctgaag  20790200                                                                                                    <                                                                                                    x                                                                                                    x                                                                                                 <xxx                                                                                                 xxxx                                              --------->TOE2(3)                                  xxxx                                             --------->ATHB12                                 <xxxxxx                 --------->WOX13(1)          <--------HAHB4                                 <xxxxxxxx  <---------CCA1(1)             --------->ANAC46                                            xxxxxxxxx  <---------RVE1(1)      <---------ARR11(3)  <---------ICU4                 <---------AHL20(2)<xxxxxx <---------ARR11(3)      --------->ARR11(3) --------->ICU4                 --------->AHL20(2)<xxxxxxx --------->ARR11(3)  ---------->DOF2        <---------ATHB12               <---------AHL20(2)xxxxxxxx <---------AHL20(1) --------->YAB1          <---------YAB1          ----------->GT1         xxxxxxxxx --------->AHL20(1)<---------ATHB12 --------->At5g28300          <------ZmHOX2a(1)   --------->YAB1-- >RAV1(2)    <-----------GT1   ------>ZmHOX2a(1)              <------ZmHOX2a(1)     <---------YAB1xxx   aaagatatttgggtttatccaatcaaaggtctcctcgcagtaactcatcattagaccccaaacaggaggaatgtaaatttttttttttgataactcagtg  20790300                <xxxxxxxxxxxxxxxxsmallRNA(s)                ----------->HVH21               <xxxxxxxxxxxxxxxxsmallRNA(s)               ------>ZmHOX2a(2)               xxxxxxxxxxxxxxxx>smallRNA(i)              <---------At4g35610              <xxxxxxxxxxxxxxxxsmallRNA(s)              xxxxxxxxxxxxxxxx>smallRNA(i)              --------->At4g35610              xxxxxxxxxxxxxxxx>smallRNA(s)                                                         <-            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           --            <---------ZAT14                                                                       <--            --------->ZAT14                                                          <-----------RAV1(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    xxxxxxxxxxxxxxxx>smallRNA(i)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <---------ARR14(2)<        <xxxxxxxxxxxxxxxxsmallRNA(i)                                              <xxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    xxxxxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    <xxxxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   --------->LBD16    ---       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   xxxxxxxxxxxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   --------->HSFB2a(2)<--      --------->ANAC46                                                         <---------HSFB2a(2)<--      <---------ALFIN1                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     xxxxxxxxxxxxxxxxxxxxxx     <---------ZAT14                                                          --------->LBD16     <--    xxxxxxxxxxxxxxxx>smallRNA(i)                                              <---------LBD16  <xxxxx    <xxxxxxxxxxxxxxxxsmallRNA(i)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxx    --------->AtMYB61   --------->ZAT18     ------>NtERF2                    <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxxxxxsmallRNA(s)     ====================RAV<  <xxxxxxxxxxxxxxxxsmallRNA(s)             ------>NtERF2                     ----------->RAV1(2)<---- --------->ANAC46  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    <------NtERF2<---------MYB46(3) xxxxxxxxxxxxxxxxsmallRNA(i)              ----------->HVH21               xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(i)             --------->LBD16                 --------->PCF2  xxxxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(s)             <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------PCF5 <---------AtMYB61 xxxxxxxxxxxxxsmallRNA(i)                <------NtERF2                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(i) ----------->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ATERF1(1)       --------->ANAC46--------->ARR14(2)- xxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxsmallRNA(s) --------->MYB52(1)xxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->ANAC58         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)- xxxxxxx>smallRNA(i)    <---------ZAT18 --------->ANAC46        <---------ALFIN1<xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(si3)    <------NtERF2   xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxsmallRNA(i)   --------->ZAT14 --------->ANAC58       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)< xxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(i)     <xxxxx xxxxxxx>smallRNA(s)    <---------ZAT14<---------LBD16        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)-- ------->HSFB2a(2)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ATERF1(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----   tccagaccacacagtgatctgactagtccactgggccgaagcccgcgaccagggatttttgagcctccacttaagggccccctggaactggtggtctgag  20790400                <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             xxxxxxxxxxxxxxxx>smallRNA(i)             --------->LBD16             <xxxxxxxxxxxxxxxxsmallRNA(i)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)            xxxxxxxxxxxxxxxx>smallRNA(s)           <---------LBD16          xxxxxxxxxxxxxxxx>smallRNA(i)         <---------ARR14(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->ARR14(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------GLK1(1)        --------->GLK1(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       ----------->ARR10       <xxxxxxxxxxxxxxxxsmallRNA(i)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s) --------RAP2.3(1) --------->RAV1(1) -------DEAR3(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(s) xxxsmallRNA(fl3) xx>smallRNA(se3) xx>smallRNA(si3) xxxsmallRNA(se3) ------>ATERF1(2) x>smallRNA(se3)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -------ATERF1(2)           <---------ZAT2 -------RAP2.3(2)        <---------LBD16 x>smallRNA(le3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------RAP2.6(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(le3)        <------ZmHOX2a(1) xxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------NtERF2xxxxxxxxxxxxxxxx>smallRNA(s) -----ATERF1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxx>smallRNA(si3)  --------->ZAT2 -------->ATERF1(1)    xxxxxxxxxxxxxxxx>smallRNA(i) xx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------->At4g35610 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------DAG2 ---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)       ----------->GT1                           <---- xxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <----- ---->NtERF2xxxxxxxxxxxxxxxx>smallRNA(i)------------>CBF    ---------->DOF2                 <-------- ----->ATERF1(1)----------->GT1 <------NtERF2 ----------->GT1    <----------DOF2 <---------TOE2(3)<--   gcggcagagcaaatccgcatgttaattccctggtggccaggaatcaatttgtaaatttgtaacaaagctttttgtttttgtttaagttagtgattttttt  20790500                                                                                               <-----                                                                                              -------                                                                                             --------                                                                    <---------ANAC58         <------- -----AHL20(2)                    <---------ANAC46                  <---------ANAC58    --------->TOE1(3) ----AHL20(2)           --------->AHL20(2)                      <------------CBF        --------->TOE2(3) -AHL20(2)              <---------AHL20(2)  <---------TOE2(3) <---------YAB1        <---------WRKY38(1) -------TOE2(3)        --------->AHL20(2)  <-----------GT1 <---------TOE2(3)       --------->WRKY18(1)   aatgttttggggcttaagaatgcaaaaaaatttgctctgtgtaattaacatttaagatgctaatgttattgcttcacaagttttagtcaacctcagatac  20790600     <-----------GT1                      <---------GLK1(2)                                   -------  --------->bZIP60(1)                     --------->ARR14(2)                                 -------- --TEIL                                   <---------ARR14(2)                       --------->ZAT14 -->CCA1(2)                          --------->At4g35610                           <---------ZAT14  < ->ARR14(2)                          ----------->RAV1(2)                        <----------DOF2  <--- --ARR14(2)               <---------MYB52(1)                               ---------->ID1    --------   atcgatgtcactatctaaatagacctctggtacttcatcatctggattctcttcatcttctgtctctgttccttcttgttctctttgcactgctcgagca  20790700    <---------ARR14(2)    --------->ARR14(2)  --------->LBD16 <---------ANAC58 <---------ANAC58 <---------ANAC46                                                             --------->ARR14(2) ----->CBF------>MYB83                         <---------AtLEC2               <---------ARR14(2) ->ANAC58 ------>MYB46(1)                 <----------DOF2              <----------DOF2             -- ---------LBD16   <---------ANAC58     --------->ANAC58      --------->ANAC55(2)                 ---- ---------CBF     <---------ANAC58     --------->ANAC58 ------->TEIL <---------At4g35610         ---- ->ANAC58 -------->P            ----------->HVH21   ------->TEIL     --------->At4g35610  --------->ANAC46   attgcggattccaaccttgtgcttacagtttcccatgacacaagcttttccatgaatgtatttatgtattcagctcttcggttctgcataaaacacaaca  20790800                                                                                  ---------->DOF2                                                                          --------->ALFIN1                                                                          <---------ANAC46                                                                          <-----------RAV1(1)                                                                        <----------DOF2                       <---------ANAC58                                 <---------ANAC46                       <---------ANAC46                               <---------ZAT2                       <---------ANAC58                               <---------ZAT14            <---------ANAC58                                          --------->ZAT2            <---------ANAC58         <---------LBD16                 --------->ALFIN1 ------->YAB1          ----------->GT1         --------->TOE1(3)    --------->ZAT18         --------- ----->ANAC58          <---------ANAC55(2)<----------DOF2          <---------ANAC58     <----------ID1 ----->ANAC58<----------DOF2   <----------DOF2 --------->TOE2(3)   <---------ANAC58    ----------->GT1   agcatgagaccattgctttcaaatttcgtgaaactttattcgggcattacctcaaaatccagatagtaagcgtgctgtgtggcacaaagagggaaaaaga  20790900  Previous    Next  AGI:  At5g51090.1    Description:  unknown protein Range:  from: 20789463    to: 20790420    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g51100.1    Description:  FSD2 (FE SUPEROXIDE DISMUTASE 2); iron superoxide dismutase. similar to FSD1 (FE SUPEROXIDE DISMUTASE 1), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT4G25100.3); similar to FSD1 (FE SUPEROXIDE DISMUTASE 1), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT4G25100.2); similar to FSD1 (FE SUPEROXIDE DISMUTASE 1), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT4G25100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62292.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) Range:  from: 20790522    to: 20792927    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version