Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <-------TEIL          <----------DOF2            <------ZmHOX2a(1)   --------->CCA1(2)       --------->ARR11(3)      =============HOX2a_HOX2a --------->ARR14(2)                  <--------       <---------ARR11(3)      ------>ZmHOX2a(2)        <---------ARR14(2)            <---------GLK1(2)    <-----------GT1          <---------ARR11(3)   --------->ZAT6                <-----------GT1 ---------DOF2               --------->ARR11(3)--------->YAB1               <----------DOF2---------- --------DAG2      <---------At4g35610        <---------ATHB12   <---------ALFIN1     <---------ARR11(3)   gctttttgacatctttgatttagcagtctttgatcttgaggaatagcaatgaacactagatacactcacacttgcaggctttaaactagattttaaagat  20787800                                      <---------ZAT2         --------->ANAC58                                      --------->At4g35610    --------->ANAC58                 <------                               ----------->HVH21       --------->At4g35610                 <---------MYB46(3)                             ----------->GT1     ------>ZmHOX2a(1)                         ---------- -TOE2(3)             --------->ALFIN1--------->ZAT2 --------->ANAC46            --------->ANAC58 >DOF2   --------->ICU4 --------->ALFIN1        --------->TOE2(3)                --------->ANAC58<---   gtatagaagcactgattccatggaatgtgggaagtgacatagctggacttcctaaacagcaccaaggaaatgtatgaacgagcacgagagaagcggttca  20787900                               <------ZmHOX2a(1)                            --------->DAG2                     --------->ANAC58                           ---------->DOF2                     --------->ANAC58                     -                   <---------TOE2(3)              <---------ZAT14                                   < -TEIL             --------->HSFB2a(2) <----------DOF2     --------->ANAC58       --------->ANAC55(2) ->GT1             <---------HSFB2a(2) --------->TOE2(3)   --------->ANAC58     <-----------GT1  <--- ------YAB1    <----------DOF2<----------ID1      --------->ZAT14           <------ZmHOX2a(1)  <-----   ttataggtagcactgagatttatggaagaaaaaggacacaactttagataactacagagagaggcaagaacaactataggatttacatattgccattgag  20788000                    <---------ICU4                    --------->YAB1                    <--------ATHB1                    -------->HAHB4                    <--------HAHB4                    --------->ATHB51                   <---------YAB1                 --------->YAB1           <---------At4g35610        ---------->DOF2<-----------GT1    --------->ZAT6 --------->ICU4 -------->MYB46(3) <---------ATHB51        --------->AHL20(2)                           <---------TOE2(3) ---------MYB52(2) --------->AHL20(2)   --------->TOE2(3)                               <---------YAB1 ---ZmHOX2a(1)  <---------YAB1          <-------GAMYB              <----------DOF2  --------->YAB1 ----TOE2(3) ----------->GT1           ----------->GT1        <-----------GT1  --------->ZAT18     --   gaacaaacactaaagctgataataattacaagttcaagagttcgttaaaatggctctattcaaatcacactttggcacaagaccactaataagattacca  20788100                                                                            <---------HSFC1(2)                                                                            <---------HSFB2a(1)                                                                            --------->HSFB2a(1)                                                                            --------->HSFC1(2)                                                                         --------->ATERF1(1)                                                                        --------->LBD16                                                                        <---------SPL7             --                                                                        <---------ATERF1(1)        <-          ---------->DOF2                                              --------->DEAR3(1)        <---    <---------HSFB2a(1)                                               <---------LBD16          <-----    --------->MYB46(3)                                           --------->At4g35610           ------    --------->KAN4(1)                                            --------->ZAT2             ---------   <---------KAN4(2)       --------->At4g35610                  --------->GLK1(2)        <---------DEAR3(1) ------->ALFIN1            <---------At4g35610          <------ZmHOX2a(1)<------NtERF2  <---------At4g35610   agtggaacaatcgaaagagaagaagagacagcataccagagagagttttttttgtttaggagggagaagctcgccggaggcttctgtttgagcggtgttt  20788200       --------->ARR14(2)      <------NtERF2     --------->LBD16     <---------RAP2.6(3)    <---------------AGL15    --------------->AGL15    <---------ANAC46   <------NtERF2   ----------------->AGL2   <-----------------AG   <-----------------AGL1   <-----------------AGL2   ----------------->AGL3   <-----------------AGL3   ----------------->AGL1   *TSS<---------ARR14(2)                                            --------->O2   <---------LBD16                                               --------->DEAR3(2)  ------>NtERF2                                           --------->GLK1(2) --------->ALFIN1                                        <---------ARR11(3) ------->LBD16                                           --------->ARR11(3) <---------DOF5.7(2) --------At4g35610                                     ----------->ARR10  --------->DOF5.7(2) ------LBD16                          <----------DOF2 <------ZmHOX2a(1)   <---------MYB52(1) ----ARR14(2)                --------->AHL20(2)     <---------TOE2(3)<---------O2  --------->TOE2(3) --->ARR14(2)                <---------AHL20(2)     <---------TOE1(3)<---------bZIP60(1)          <-- >ALFIN1<------------CBF------------>CBF         <---------AHL20(2)  --------->bZIP60(1)    ------>ZmHOX2a(1)   ccggtgccggaattggaaacaagaaggccaattttttggtctttttagaattttaaggagattttgaaacgacgtcgttatcgaaccctaattcctctgt  20788300                --------->YAB1               <---------TOE1(3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------TOE2(3)                                       --------->ZAT18               <---------YAB1                                          <---------ZAT18         <---------ANAC46                                 --------->bZIP60(2)      --------->bZIP60(1)       <-------MYC3              --------->ANAC46        --------->ATHB12      <---------bZIP60(1)       ------->MYC2              <---------TGA1a  <---------HSFB2a(2)    <---------ICU4              ------->MYC3              --------->O2<---------ANAC58    --------->YAB1<---------YAB1<-------MYC2              <---------O2<---------ANAC58     xxxxxxxxxx   <---------ATHB12             ------->MYC4========================bZIP_DOF     --------->ICU4  ----   --------->ICU4--------->ARR11(3)<---------ANAC58       --------->TGA1a  --------->HSFB2a(2)  -----  <---------TOE2(3)     <---------TOE2(3)   ---------->DOF2           <---------ZAT6     xxxxxxxxxxxx -------At4g35610<---------ARR11(3)<---------ANAC58     <---------ALFIN1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   agctaatgatgtcgtttaagataattaagaaacatgtgcttgagaataaagcccattaccacgtcgtttgtagtgtgccagaaatgatttagaacaaggt  20788400  <---------WOX13(1)      --------->ANAC58                   --------->AHL20(2) xxxxxxxxxxxxx>smallRNA(si3)                                 <---------AHL20(2) ------->GT1        --------->ICU4                    --------->ARR11(3)                           -- ---->ALFIN1   ----------->GT1                        <---------ARR11(3)                          <-- xxxxxxxxxx>smallRNA(si3) --------->ANAC58      ----------->GT1            <------ZmHOX2a(1)---------   ggtaattgatcaaaaataggcaaaaattaagcaaaaaatgaacaaaatataagtaaaatctatataaatatagaataggagagttctctctgtaacaatc  20788500                                                     <----------DOF2                                                 <---------ANAC58                                                 <---------ANAC46                                 ---                                <----------DOF2  <---------ANAC58                                ----       <---------YAB1<---------ANAC58   --------->REM1(1)                                    <-------       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------     <-----------GT1 <---------ANAC46   --------->MYB46(3)                                  <-------- ------->GLK1(2)     <---------ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i)                       ----------- -------GLK1(2)      <---------AtLEC2 ----------->RAV1(1)                              --------->MYB52(1) >MYB46(3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------YAB1          xxxxxxxxxxxxxxxxxxxx   gattctgttaccattttgtagttgcatgtctcgtctttagcaacaacaatgtcgtctttatttttgagcgtctgaatcacagagaaaacaaacagttaat  20788600         <---------YAB1                                  --------->YAB1     <---------ARR11(3)                    --------->AHL20(2)     --------->ARR11(3)                    --------->AHL20(1)     --------->AHL20(1)                  <---------ARR11(3)   --------->ARR11(3)                    --------->AHL20(2)   --------->AHL20(1)                    <---------AHL20(1)   <---------ARR11(3)                    --------->AHL20(1)   <---------AHL20(1)       <---------AHL20(2)  <-----------GT1 -------->GT1             --------->AHL20(2) --------->YAB1 ----->YAB1     <---------ZAT18 <---------AHL20(2)       <---------ICU4         --------->TOE2(3) --AHL20(2)    <---------ANAC58--------->AHL20(1)      <---------YAB1           --------->TOE1(3) ->AHL20(2)    <---------ANAC46<---------AHL20(2)   --------->ICU4              <---------MYB59 -MYB52(1)     <---------ANAC58--------->AHL20(2)   <---------YAB1      ---------->DOF2            -- >GT1<---------AHL20(1)   <---------AHL20(2)<---------YAB1       --------->AHL20(2)               --- xxx>smallRNA(si3)  <----------DOF2--------->AtLEC2--------->TOE2(3)   <---------AHL20(2)<---------TOE2(3)   tagaaaatattttcattgtgtgctttatataaatttaatgcaaaatattataacattattaatgacattatatataaaggaacctaaaatataggtttga  20788700  Previous    Next  AGI:  At5g51080.1    Description:  RNase H domain-containing protein. similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40947.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Ribosomal protein L9 N-terminal-like (InterPro:IPR009027) Range:  from: 20786030    to: 20788203    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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