Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ------>ZmHOX2a(2)                                                                      --------->GLK1(1)                                                                      <---------GLK1(1)                                                                      <------ZmHOX2a(2)                                                                     <---------ARR14(2)                                                                     <---------ARR11(3)                                                                     --------->ARR14(2)                                                                     <---------AGP1                                                                    <---------GLK1(2)                                                                    <------ZmHOX2a(1)                                                              --------->YAB1                                                              <---------ICU4                                                          --------->AHL20(2)                                                  <-----------RAV1(1)--------->ARR11(3)              --------->YAB1 ---------->DOF2  --------->TOE2(3)  --------->YAB1             <---------YAB1--------->CCA1(2)  <---------DAG2 --------->ICU4----------->HVH21     ---------->DOF2    <---------TOE2(3)     --------->TOE1(3)  <---------LBD16   attccactaaagagcatcataagtttgagataaaagaacatcacaaaaccttatgttgaagtaattatcaggatctcttgacgcttgctccctcgtaaac  20764100                                                                                               <-----                                                                                   --------->ICU4                                                                                  --------->ANAC58                                                                           --------->DAG2   ---------                                          --------->YAB1                  ---------->DOF2<---------YAB1                                     --------->AHL20(2)      --------->REM1(2)    --------->ANAC58---    >>>>>>>>>>>>>>>>>LFY     --------->YAB1  <---------GLK1(2)     <------ZmHOX2a(1)     <---------TOE2(3)   ttcaaaacccaatgtaaacaaacttctcaattcataaaaaaaaatcagaatttcatagttctgagtagaggaaaccaaaagtgtaagcattgagattgtg  20764200                                               <---------ARR11(3)                                               --------->ARR11(3)                                           <---------ANAC58                                         <                                           <---------ANAC58                                       ---                                           <---------ANAC46                                    ------                                  --------->ANAC58              <---------ARR14(2)            -------                                  --------->ANAC46           <---------ANAC46                 -------     <-----------GT1              --------->ANAC58         <---------MYB46(3)                -------- ----ANAC46       <-----------HVH21 <---------REM1(2)     --------->ALFIN1                  <-------- >GLK1(2)        --------->LBD16  ----------->HVH21       <---------AtMYB61               <---------ABI4(2) -------->GT1  <---------LBD16  --------->CCA1(2)------>ZmHOX2a(2)                        --------->ZAT18   ggtttaaaaaccttctctccggtgagagaacgagagacgacacgggcgtgatctctacgagtggtggatttagtgagacgcttgatgagaagagcaccgc  20764300                                         <---------ALFIN1             ------->TEIL                                        --------->ATERF1(1)       ------>ZmHOX2a(2)                                       <---------ATERF1(1)       <------ZmHOX2a(2) --------->YAB1                        ------>NtERF2            <---------ARR14(2) --------->AHL20(2)                   <---------TCP20           --------->ARR14(2) ---------ATHB12                    <---------ATERF1(1)      <---------HSFB2a(2) ------>WOX13(1)                   --------->ANAC46          --------->HSFB2a(2) >NtERF2  <---------GLK1(2)        --------->ANAC58         <---------LBD16         ----------------- -->DREB2C(2)                      --------->ANAC58       --------->GLK1(2)         ================= -->DEAR3(1)                    --------->ZAT2           <---------GLK1(2)      <---------SPL7 ->ORA47(2)                   ------->PIF5          --------->At4g35610       --------------->AtSPL8 -ATERF1(1)                   <-------PIF5          <---------At4g35610  --------->ANAC46 ---------->DOF2   caattaaaaccagagtcttgacaactagaccacgagcacggctccacccgtttgagctcgattctggatccgaacccgactcggtacccattaaaaggtt  20764400                                                                                               ------                                                               --------------->AGL15      ===========                                                              ----------------->AGL1   ==============                              --------->ZAT6                  ----------------->AG   --------->ALFIN1                            <---------ARR11(3)     ----------->GT1            <------ZmHOX2a(1)<-----                            --------->ARR11(3)   --------->At4g35610          =======================                      <----------DOF2          <------ZmHOX2a(1)        ---------->DOF2<------ZmHOX2a(1)               --------->GLK1(2)            <-----------RAV1(2)<---------------AGL15================= >AGL3       --------->HSFB2a(1)            <---------LBD16   ----------------->AGL2<------ZmHOX2a(1) ===============================================================================MADS_MADS <------ZmHOX2a(1)   tcgaatttagttcaaagattccatctttagtatctctacttgtttctcaggagcagaaaattttgccgattagagaaagaggaagaggaggaggagtaag  20764500                                                    <-------MYC4                                                    ------->PIF5                                                    ------->MYC2                                                    <-------PIF5                                                    <-------MYC2                                                    ------->MYC4                                                    <-------MYC3                                                   <--------ABF1                                                   <---------O2                                                   <---------ANAC55(2)                                                   <---------TGA1a                                                   ================================bZIP_DOF   <------   *TSS<------ZmHOX2a(2)                           <---------ANAC46               <---------WOX13(1) ----------->HVH21                                 ====================MYC_MYB   >>>>>>>>>GATA-4 --->MYB59                                  <---------ANAC58                     >>>>>>>>>GATA-3 =============HOX2a_HOX2a         <---------MYB46(3)------->MYC3                 >>>>>>>>>GATA-2 =============HOX2a_HOX2a  <---------ARR14(2)      --------->O2         <----------DOF2   --------->YAB1 ----TOE2(3)  --------->ARR14(2) --------->ALFIN1  --------->TGA1a<---------AHL20(2)     ----------->GT1 =============HOX2a_HOX2a <---------SPL7<------------CBF  <------------MYB.PH3(1)<------------CBF <-- =============HOX2a_HOX2a--------->DEAR3(1) <---------ANAC58 <---------MYB52(1)  >>>>>>>>>GATA-1-----   gttgtgacgatcgacgttttcgcctcgccgaaccagtggtgagattgtttgccacgtgtaatcgttttttaattcttttagtggattgaaaatgaaaatt  20764600                                                                                   --------->AHL20(2)                                                                                  <---------YAB1                                                                                --------->YAB1                                                                  <---------AHL20(2)                                                               <---------ICU4   --------->AHL20(2)                                                              --------->ICU4   --------->ICU4                                                            --------->YAB1   <---------ICU4                                                            --------->AHL20(2) <---------YAB1                                                       --------->AHL20(2)    --------->YAB1                  <---------AHL20(2)                   <---------YAB1       --------->ICU4              <---------AHL20(2)                       <---------AHL20(2)   --------->AHL20(2) <---------YAB1   --------->AHL20(2)            --------->ANAC58  --------->AHL20(2)      <---------At4g35610 ------CBF--------->ICU4                        --------->ANAC58 <---------AHL20(2)<---------AHL20(2) -------YAB1 <---------YAB1          ----------->GT1  --------->TOE2(3)     <---------AHL20(2)     -- ------>GT1<---------ICU4--------->TOE2(3) --------->YAB1--------->YAB1     <---------ATHB51 --------   gttattcttctaatttttatttaaatttcttaaaacaattggtaataaaaacgaaatattaataaaaattatttagaaataattataaattgagatgatt  20764700                                                                                          --------->ZAT6                                                                                        <-----------GT1                                                                                      --------->AHL20(2)                                                    <---------AHL20(2)           --------->LBD16                        <---------YAB1             --------->AHL20(2)           --------->ANAC55(2)             <---------AHL20(2)                    <---------AHL20(1)           <---------ANAC55(2)             --------->AHL20(2)                    <---------AHL20(2)     <---------AHL20(2)            <---------AHL20(1)               <-----------GT1              --------->AHL20(1)        <            --------->AHL20(1)               --------->YAB1               --------->AHL20(2)       --            --------->AHL20(2)            --------->YAB1                 <---------AHL20(2)        <- --------->GT1 <---------YAB1    --------------->AtSPL8                  --------->AHL20(2)        <- ->ATHB12   <---------AHL20(2)   <---------------AtSPL8        <---------YAB1  <---------LBD16 <-----   tgagtaaatttgaatttatttttgttatgagattgtgagtacaaaaataacaatttttttgtattttgtttggaattaaattgcgcaatttaactgtata  20764800            ---------->DOF2           ------->GAMYB          --------->MYB46(3)          <---------MYB55(2)                                         <---------AHL20(1)         -------->P                                                  --------->AHL20(1)         ------>MYB46(1)                                             --------->ARR11(3)         ------>MYB83                                                <---------ARR11(3)    <-----------GT1                                        --------->AHL20(1) ---------AHL20(2)                             --------->AHL20(2)   --------->CCA1(2) ------->AHL20(2)                        --------->AHL20(2)<---------AHL20(2) --------AHL20(2)                    ----------->GT1       --------->AHL20(2)       ---------->DOF2 --------AHL20(1)            <---------AHL20(2)<---------YAB1      <---------ARR11(3)         ------- ----AHL20(2)               --------->AHL20(2) <---------AHL20(2)  --------->ARR11(3)        --------   attttttttccaaccaaagaattttggatattaaatgtctagataaaatataaatgagaaattttttgagatatattttctcagttaaaagaaaaaaaag  20764900                                                                  --------->AHL20(1)                                                                  <---------AHL20(2)                                                                  <---------AHL20(1)                                                                 --------->AHL20(2)                                                                 <---------AHL20(2)                                                                 --------->YAB1                                                             <---------AHL20(2)                                                             <---------AHL20(1)                                                             --------->AHL20(2)                                                             --------->AHL20(1)             --------->ZAT6 --------->YAB1              >>>>>>>>>>GT-3b--------->YAB1  --------->YAB1     ------->TEIL       --------->AHL20(2)  --------->AHL20(2) -->DAG2--------->AHL20(2) ----------->GT1           ----------->GT1  <-------TEIL -->DOF2--------->YAB1 --------->ARR11(3)   --------->ICU4  <---------AHL20(2)    ----------->GT1<---   ttaatgacaattatatcactacgaacatattgataaaccaaaaaaaatgatcaagaagaaaaataaattatattcatagagaaatggtttcttcatatcg  20765000  Previous    Next  AGI:  At5g51020.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN83158.1); contains InterPro domain Protein of unknown function DUF1001 (InterPro:IPR010404) Range:  from: 20762575    to: 20764503    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g51030.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G61830.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79560.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 20764985    to: 20766732    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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