Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    ---------->DOF2                                  --------->ARR14(1) ------->GT1                                 --------->ARR14(2) -ALFIN1                                  --------->LBD16     <---------TOE2(2) >MYB46(3)                              <---------LBD16       <---------TOE1(2) ---->AGL15                        <---------AHL20(2) ----------->GT1 -----AGL15                       --------->YAB1   --------->CCA1(2) ----->AG--------->ALFIN1        --------->ICU4   --------->ARR14(2) ----->AGL1                      <---------YAB1------>ZmHOX2a(2)                               ------ ----->AGL2                 ----------->GT1  <---------ARR14(2)             <---------ANAC58  <------ ------AGL2       <---------MYB46(3)<---------YAB1<---------ARR14(2)        <---------ANAC58  -------   ggataaaagcagtgtcgaagttgttgaatagagtgattataatgcgggatcggatacggtttcataggtttgaagatgggttgtgttcttgcagagatta  20758500                                                                                                  ---                                                                                            <--------                                                         ---------->DOF2                    <-------- --->ATHB12                                          --------->ANAC58                    <---------ARR11(3) ---YAB1           ---------->DOF2                   --------->ANAC58                   <------ZmHOX2a(1) -->ICU4    <---------YAB1                           --------->ANAC46           <---------ICU4    <--   ttggtaaatgagttatgctacaaaagctctctatctacattctttgttctcaaactcgccaaaggaacgatgaagaaactgaatattacaggaacttttt  20758600                                                                               --------->DAG2                                                                              ---------->DOF2                                         <---------ZAT14                   --------->TOE2(3)                                         --------->ZAT14            --------->ZAT14                <---------ZAT18     --------->ZAT14                 --------->ZAT18                <---------ZAT14     --------->ZAT18                 <---------ZAT14 ------>At4g35610                   <---------ZAT14          <---------At4g35610     <---------ANAC46 --DOF2         --------->ZAT14 <-----------RAV1(1)          --------->At4g35610  --------->ALFIN1 -DAG2 <---------AtMYB61     <---------YAB1          --------->ANAC58      --------->YAB1 -------At4g35610   <----------DOF2 <---------ZAT18  --------->ANAC58    <---------ARR11(3)   agctgagttttggtccagtgaactttcagttttgatggtgcactgcattgtgttcaagcacgatgctgactgaactatcttaaagtgttgggaaattgtt  20758700                                                                             ----------->HVH21                                                                           <---------TGA1a                                                                           <---------O2       ---------->DOF2                  ----------->GT1                    --------->O2             <    --------->TOE1(3)                 <---------ZAT14                      --------->ANAC55(2)   ----    --------->TOE2(3)                 --------->ZAT18                ------>ZmHOX2a(1)  <---------ANAC58    --------->YAB1                    --------->ZAT14             ---------->ID1        <---------ANAC58  --------->GLK1(2)              ---------->DOF2        <-----------GT1    --------->TGA1a <---------   tgggaatcttaaagttttagggactaaattggaataaaagtgtagtaaacttggtgatttactattttgtcctactcaagtgacagccatgggtgtcaga  20758800                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                             <---------ARR14(2)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             --------->ARR14(2)                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           --------->LBD16                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <---------RAP2.6(3)                                                          --------->LBD16                                                          --------->RAP2.6(2)                                                          <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                          --------->HSFB2a(2)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <---------LBD16                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        ------>MYB83                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                        --------->MYB52(1)    ---------->DOF2                                                        ------>MYB46(1) --------->DEAR3(1)                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ARR11(3)                                                     <---------ZAT2    <xxxxxxxxxxxxxxxsmallRNA(le3)                                                     --------->ZAT2  --------->TOE1(2)                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                  ----------->HVH21 <xxxxxxxxxxxxxxxxsmallRNA(i)                                               <---------ARR14(2)   <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                               --------->ARR14(2)   --------->MYB46(3)   <-------GAMYB                                              <---------GLK1(1)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              --------->CCA1(1)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              --------->RVE1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)    ------           ----------->GT1                --------->AHL20(2)<------NtERF2   <---------MYB59    ------   ----------->GT1                    <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------ ------ZmHOX2a(1)                    ----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(s)  <---------GLK1(2) ----->CCA1(2)  --------->ICU4       <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <-----------RAV1(1) --HVH21  ----------->GT1           <---------TOE2(3)<xxxxxxxxxxxxxxxxsmallRNA(s) --------->ARR11(3)   taggagggtataagggtaaaaatgaaaactgttagaattaggataaaaatatccgacctgccggaatcgaaccagcgacctaaagattttctgttgcaaa  20758900                              <---------TOE1(3)                              <---------TOE2(3)                          <---------At4g35610                          --------->At4g35610                         <xxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxsmallRNA(i)                        <xxxxxxxxxxxxxxxxsmallRNA(s)                       <xxxxxxxxxxxxxxxxsmallRNA(i)                       xxxxxxxxxxxxxxxx>smallRNA(i)                       <xxxxxxxxxxxxxxxxsmallRNA(s)                       <xxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxsmallRNA(s)                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     ------>MYB83                     <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     ------>MYB46(1)     ------------>CBF                     <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                     ----------->RAV1(2)*TSS                     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    --------->MYB52(1)  <-----------GT1                    <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   --------->MYB46(3)<---------ARR14(2)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   <---------MYB111(1)--------->GLK1(1)                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <---------YAB1      xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ARR14(2)        --------->TOE2(3)  <---------ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------TOE2(3)  --------->ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <-----------GT1 --->ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------DAG2 --->ANAC46   <----------DOF2 <---------AtMYB61        <----------DOF2                           <--- --->ANAC58  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ATHB12   <-----------GT1    <---------AtLEC2   caactacagtcttccgctctaccaactgagctaaggtcggatttacaatctaatcaactttttaacattataaacctttcttagtattttgcaagaattc  20759000                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                   --------->YAB1                                              <---------AHL20(2)                  <---------YAB1                                             --------->AHL20(2)                 --------->YAB1                                             <---------AHL20(1)                <-------TEIL             ------->TEIL                    <---------AHL20(2)             <---------At4g35610  ----     --------->At4g35610                  <---------AHL20(2)                --------->At4g35610  <---     <---------At4g35610                 --------->AHL20(2)          <---------AHL20(2)       ------- -------DOF2 -------->P                  <---------AHL20(2)         --------->AHL20(2)--------->YAB1   tttaatcagctcatcaacctcttcttaagaaaaaattctactattaattttttttttttttgtaattctataaaattcagcttcataataatatgcaaaa  20759100                  --------------->AGL15                  <---------------AGL15               --------->ANAC46               --------->ANAC58                                                        --------->MYB46(3)               --------->ANAC58                                                      ------->TEIL      --------->AHL20(2)                                                         --------------->AtSPL8      <---------AHL20(2)                                           <-----------GT1 <---------SPL7  <---------RVE1(1)                                     <---------YAB1        <---------TOE2(2) ----->At4g35610 ----------------->AGL3              --------->AHL20(2)       <---------TOE1(2) ------At4g35610 ----------------->AGL2<---------YAB1<---------AHL20(2)      <-----------RAV1(2) --->DOF2  <-----------GT1           --------->YAB1 --------->AHL20(2)   <-----------HVH21   gctgatattttattcacaagccatatgaagaaaacacattgatgaaagtctcaattttattcttgattttaacaacatcacaggttgtacccatcccctt  20759200                                                                                                    <                                                                                                    <                                                                                                -----                                                                                                <----                                                                                                <----                        --------->AHL20(1)                                                      -----                      <---------AHL20(2)                 <---------AHL20(2)                    ------                      <---------AHL20(1)                <---------AHL20(2)                     ------                     --------->YAB1      <---------AHL20(2)                                ------>NtERF2                    <---------YAB1      --------->YAB1  --------->AHL20(1)              ------>NtERF2                  --------->YAB1       <---------YAB1   --------->AHL20(2)              --------->LBD16             <---------YAB1   ---------->ID1            <---------AHL20(1)              <---------ATERF1(1)        --------->ANAC58<---------AHL20(2)             --------->AHL20(2)              --------->LBD16        --------->ANAC58<---------AHL20(1)   --------->ATHB12        --------->YAB1   <---------LBD16        --------->ANAC46--------->ARR11(3)  <---------YAB1        >>>>>>>ZML2  <-----------GT1 ------   ctctgttttcaagctatgatttataatattttggctctcttattatatcattgacaaattaatttgttctagcatacttcattaccctcccggctccaag  20759300     <---------ANAC58     <---------ANAC46     <---------ANAC58  ----------->HVH21          <---------ALFIN1 ------MYB83          <------MYB83 ------MYB46(1)       <------MYB46(1) ---->ZAT2           <---------DEAR3(1) -----ZAT2           --------->ALFIN1 -----STY1(2)        <---------AtMYB61     --------->ARR11(3) ---->STY1(2)     <---------ANAC46         <---------ARR11(3) --->ANAC46       <---------ANAC58        <---------GLK1(1)                    <------ZmHOX2a(1) --->ANAC58       <---------ANAC58        <---------CCA1(2)             <----------DOF2 --->ANAC58  <---------REM1(1) --------->ANAC46             <-----------------AGL1   ctaggtgacttgatcatgtagcgttggtgctccacacgagcttgatatcttctctcttacttctcggttttggcctttggaggagaagcacaaaaccttc  20759400  Previous    Next  AGI:  At5g50990.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT3G62890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83162.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68396.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 20756645    to: 20758507    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g50995.1    Description:  pre-tRNA. tRNA-Tyr (anticodon: GTA) Range:  from: 20758904    to: 20758940    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version