Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->ZAT18 ------->TEIL                                    --------->At4g35610                               <----------DOF2      <---------At4g35610      --------->YAB1    --------->ANAC46                    --------->HSFC1(2)      --------->At4g35610      <---------ICU4    --------->ANAC58                    <---------HSFB2a(1) -------->GLK1(1)             --------->ICU4--------->ANAC46                         --------->HSFB2a(1) ---------GLK1(1)             <---------ATHB12   --------->ANAC58      --------->TOE2(3)    --------- ------->ARR14(2)      --------->ANAC58 ----------->RAV1(1)            --------->TOE1(3)    --------- --------ARR14(2)      --------->ANAC58--------->ANAC46           <---------ATHB12   <---------HSFC1(2)   ggatacccatctgcaatcgaaaaacacgcttaatcatgagcacaacacaacacgaatcgaaaacaccaataaaccctaaaaatcggaactttctacacca  20717900                                                              ---------->DOF2                                                             --------->YAB1              --------->ALFIN1                              <---------ATHB12            <---------O2                                   ------>MYB46(1)          --------->ZAT14                                  ------>MYB83   --------->ANAC58          <---------ZAT14                                 --------->WOX13(1) ---------->DOF2      ---       --------->WOX13(1)         ------->MYC3           <---------------AGL15                 ------     <---------ATHB12             <-------MYC3          --------->MYB46(3)--------->ANAC58    <------ >REM1(1)--------->WRKY18(1)   <---------ALFIN1 --------->ANAC58--------->ANAC58            --------- >ANAC46<-----------HVH21    ----------->RAV1(1)--------->ANAC58--------->ANAC58         --------->TOE2(3)   attcacaatcagtcaagtggaactagaatacccacacatgtaatttcaaaacgccctaaccaatcaaagcaaaaacaagtaaagcccctaacttcaatca  20718000                                                                         --------->DEAR3(1)                                                                        --------->DEAR3(2)                                                                       ------->TEIL  <---------------AtSPL3                                           --------->TOE1(2)           <---------At5g28300                                          ----------->RAV1(2)         <-----------GT1<---------------AtSPL8                                         --------->GLK1(2)         <---------------AtSPL8    <---------ICU4                    ----------->ARR10       ==============================HOX2a_HOX2a ------>ANAC46      --------->DAG2<------MYB46(1)             ------>ZmHOX2a(2)      <------ZmHOX2a(1) --->YAB1          ---------->DOF2<------MYB83              <---------AGP1------>NtERF2 ---ATHB12   ----------->GT1     --------->MYB59    <---------ZAT6 <---------------AtSPL3           < >WOX13(1) ---------->DOF2    --------->GLK1(2)   ----------->GT1  --------------->AtSPL8   ---------   acaccataatccccaaagtaaaaaagtagaagaatttggttagaacctggcatagtgatatcgatctgaaatgtaccgccttcgtaaggagtaccgattg  20718100                                                                <---------ARR14(2)                        --------->ALFIN1                   --------->LBD16                      <-------GAMYB                  --------->ARR14(2)                      <---------ANAC46               <---------ARR14(2)              <---------MYB52(1)                   --------->LBD16              <-----------HVH21                  <---------LBD16--------->GLK1(2)             --------->LBD16                   --------->ARR14(2)            <---------ANAC46                   <---------ARR14(2)   ------>ZmHOX2a(1)             <--           <---------LBD16                   ----------->ARR10--------->HSFB2a(1)                 ---         --------->ARR14(2)                  ----------->HVH21--------->HSFC1(2)                 <---       <---------MYB46(3)                   --------->ATERF1(1) --------->ARR14(2)            <------   <------ZmHOX2a(1) <---------MYB46(3)--------->ALFIN1   --------->ANAC46                 --------->ARR11(3) -----------RAV1(2) <---------ANAC46--------->ARR14(2)<---------GLK1(1)                    <---------ARR11(3) >ATHB12 <---------ARR14(2)         <---------ARR14(2)--------->GLK1(1)               ------>ZmHOX2a(1)   gaccaggaatggttccggtgagtcgggtgaggttatcggatttggggcagacccggatacccgaagaatcctggtttctctcgcagtcctgaagctcttt  20718200                                            <---------ARR11(3)                               --------->GLK1(1)                               <------ZmHOX2a(2)                               <---------GLK1(1)                              <---------ARR14(2)                              <---------ARR11(3)                              --------->ARR14(3)                              --------->ARR14(2)                              --------->ARR11(3)                           <---------HSFB2a(2) --------->ARR14(2)        --------->HSFB2a(2)         --------->TOE1(3)                        <---- <---------ARR14(2)   <----------DOF2       --------->ARR11(3)                                  <---- -------HSFB2a(2)    <---------ICU4        --------->RVE1(1)                                <-------- ------>HSFB2a(2) --------->YAB1------>ZmHOX2a(2)      --------->TOE2(3)               <---------ANAC46 ------LBD16   --------->WOX13(1)      --------->AHL20(2)  ---------->DOF2      <----------DOF2 ----- ----DOF2  --------->GLK1(1)  <---------ARR14(3)    <---------ALFIN1     <---------WOX13(1) ---------   ctggattcgactgaaatctatcatcttttcgagatctccgattaaaaatctcccaaaccctaaaagaagaaacagattgaaactttattatgtgtatttg  20718300                        ------->TEIL                                                   ---------->DOF2                   <---------ANAC58                                                   --------->AHL20(2) --MYB46(1)        <---------ANAC58                  <-----------HVH21      <---------TOE2(3) --MYB83       <----------DOF2                      ------->GAMYB      --------->WOX13(1) -ARR14(2)<---------At4g35610                      --------->MYB46(3) <---------AHL20(2)<---------TOE2(3) ------>GT1<---------GLK1(2)                     ----------->RAV1(1) ------------>CBF <---------AHL20(2) >ARR14(2)--------->At4g35610   *TSS--------->MYB52(1)        ------------>CBF    --------->ICU4   gtgaatcaattcagcttcttttcttgcatcttaagacttaagggagttatccaacagtcacttcttcaatattcaattaaggcaaaaattaaagttgaac  20718400                                                                                          <------MYB83                                                                                         <---------TOE2(2)                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                                   <---------MYB52(1)                                                                         <---------AHL20(2)                                                               <----------DOF2    <-------GAMYB                                                              <---------ANAC58 <-----------GT1                                                       <---------AHL20(2)<---------YAB1 <---------MYB52(1)        ---------->DOF2                               --------->AHL20(1)--------->AHL20(2)<---------MYB46(3)       ------->GAMYB                                  <---------AHL20(1)--------->YAB1<---------ANAC58      --------->MYB46(3)                              <---------ARR11(3)<---------AHL20(1)<------MYB46(1)     -------->P        --------->YAB1        ------->GAMYB    <---------ANAC58<-----------GT1    <---    --------->WOX13(1) <---------ICU4     <-----------GT1   <-----------GT1<---------AHL20(2)   -----   cgaaatcaaccaaagtctaggcccattataacgaagcccattttcaaccctatctatatattttgctttctcaatattattttccgttacgttggtttta  20718500                                                        <---------At4g35610                                                        --------->At4g35610                                                      --------->ANAC46                                                      --------->ANAC58                                                      --------->ANAC58                                                    <---------ALFIN1                                                    <---------AtLEC2                                                   <---------ZAT2                                                   <---------ZAT14                                                   --------->ZAT2                       <---------TOE1(2)           --------->ZAT14          <------ZmHOX2a(1)                        <---------REM1(2)   <----------DOF2    --------->MYB52(2) ------TOE2(3)        ------>ZmHOX2a(1)      <-----------HVH21   --------->MYB52(1)     <---------ANAC58 ----->DOF2  <-------TEIL <----------DOF2  --------->SPL7  <------NtERF2                <---------ANAC58   aagtatggagaaggattcatgctcctagctttaatgctagtctcgtccgtccctgcacggctgcattcaacggttttttggagaaatatggctagttggc  20718600                                                         --------->TOE2(3)                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         --------->GLK1(1)                                        --------->ARR11(3)                       <---------MYB46(3)<---------GLK1(1)                <---------ALFIN1        <---------At4g35610             <---------ARR11(3)               <---------ZAT14     --------        --------->At4g35610             --------->ARR14(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   --------->YAB1  <---------TOE2(3)    <---------ARR14(2)  ---------->DOF2                <---------   tactatggtcatctcaccatcaacgttgttggcatacttacagatatccctcatggcatccttgaagcactcttctccactggaatcaatgtttatcact  20718700                        ------>ZmHOX2a(1)            <---------ARR11(3)                                                                -------            <---------AHL20(1)                                                              ---------            --------->AHL20(1)                                                             <---------TOE2(2)            --------->ARR11(3)         <---------AHL20(2)                                  <---------TOE1(2)            <-----------ARR10         --------------->AGL15                                --------->LBD16  ------->MYC3     --------->YAB1     <---------------AGL15         <---------GLK1(2)     <----------  <-------MYC3    <---------YAB1      --------->AHL20(2) <---------YAB1                   =========== ->ZAT6    --------->RVE1(1)  <---------ANAC58         --------->YAB1                    <---------LBD16 --GT1     --------->CCA1(1)  <---------ANAC58         ----------->GT1         <----------DOF2<------   cccatgtgtattaatatcttatcatcctcatgccttgctattttatatagtaatggatgataaatatacacattctcaagtcttttagtttcccaggttc  20718800  Previous    Next  AGI:  At5g50870.1    Description:  UBC27 (UBIQUITIN-CONJUGATING ENZYME 27); ubiquitin-protein ligase. similar to UBC8 (UBIQUITIN CONJUGATING ENZYME 8), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G41700.4); similar to unknown [Populus trichocarpa] (GB:ABK92892.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain UBA-like (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449); contains InterPro domain Ubiq Range:  from: 20716664    to: 20718332    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g50880.1    Description:  unknown protein Range:  from: 20718592    to: 20718870    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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