Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ARR14(2)                                                                                     <---------ARR14(2)                                                                                --------->HSFB2a(2)                                                                              --------->At4g35610                                                                            <---------GLK1(2)                    <---------ZAT2                                         --------->At4g35610                    --------->At4g35610                              --------->At4g35610                    <---------At4g35610                              ----------->RAV1(2)                 <---------ANAC58                             <---------AHL20(2)<---------HSFB2a(2)          <----------DOF2                                  ----------->GT1 <---------At4g35610 <-----   <---------GLK1(2)--------->ZAT2                      --------->YAB1     <---------ZAT2  --------->LBD16 ->bZIP60(1)     <---------ANAC58<-----------GT1       <---------YAB1--------->ZAT2  <-----------ARR10 --bZIP60(1)<----------DOF2     <---------AHL20(2)   --------->YAB1  <---------ZAT2 <---------CCA1(2) --GT1  <---------At4g35610<-------TEIL             ----------->GT1  <---------At4g35610  <----------   atattgattctgctcttttgcgagctaagtccattttatctcacaaaatgcaaattgataatagttaattcagctgcagcttctgcaaatctccaggttc  20706200                                                                              <---------ZAT2                                                                              --------->ZAT2                                                                              <---------At4g35610                                                                              --------->At4g35610                                                                              ----------->RAV1(2)                                                                            <-----------RAV1(2)                                                                      --------->YAB1                                                                      <---------ICU4      <---------YAB1               --------->ARR14(2)                --------->ICU4           -------      --------->ICU4               <---------ARR14(2)         --------->At4g35610             ------- --TEIL <---------GLK1(2)    --------->MYB46(3)               <---------At4g35610             ------- -RAV1(2)                 --------->ZAT18                    <---------ARR11(3)   <---------GLK1(2)   acaagagaatgattctgcattcactaagttcacaaccgatttggagaagaatagctacttcaacatctgccataatgaccagctgattctttgcaatctt  20706300             ------>MYB83                                                                          <-          --------->DEAR3(2)                                                        --------->MYB46(2)        --------->MYB52(1)                                                          ----------->GT1--        ------>MYB83                                                              <---------MYB52(1)      <---------MYB59                                                             <--------P       --   --------->MYB52(1)                                                        --------->ARR14(1)    --   ------>MYB46(1)                                                          <---------GLK1(2)--------   ------>MYB83                                                             --------->ARR14(2)     <- <---------MYB59                           --------->ARR14(2)               --------->ARR11(1)     <- --------->AtMYB61               ----------->GT1        --------->ARR14(1)  <---------ARR14(2)    <-- -->TOE1(3)  ------>MYB46(1)    --------->DAG2        --------->ATHB12   <---------TOE2(3)  --------- -->TOE2(3)<---------MYB59     ---------->DOF2       <---------YAB1  <----------DOF2--------->MYB52(2) -->YAB1------>MYB46(1) --------->DEAR3(2) <---------ARR14(2)     ------->TEIL   <-------GAMYB    <--   aaaccaaaccgaaccgaaccatttgaaccgaagaaaagttaaaccgatatggattatgattcggtttgcatctttatggattcggttagttaaaaaaagc  20706400                                         <-----------HVH21            <---------AHL20(2)          <------MYB46(1) --------ARR11(1)                 --------->AHL20(1) ------->GLK1(2)                  <---------AHL20(2)                                      <---------AHL20(2) ----->TEIL --------->AHL20(2)    <---------AHL20(1)                                      --------->AHL20(2) ------->ARR14(2)                <---------AHL20(2)                                       --------->AHL20(1) ->DAG2    --------->YAB1 --------->TOE2(3)                                               <---------AHL20(1) ----------ARR10          --------->TOE1(3)      <---------ALFIN1                      --------->YAB1 --------ARR14(2)        ----------->GT1<------MYB83                                   --------->AHL20(2) -------CCA1(2)          <----------ID1--------->MYB59   <----------DOF2          ----------->GT1 ->DOF2    --------->AHL20(2)    --------->AHL20(2)     --------->TOE2(3)  --------->TOE2(3) <------- -------ARR14(1)    --------->YAB1--------->AHL20(2)<----------DOF2     ----------->RAV1(1) ---------   gaatctctctgaattaaaataagtataacgtcaaattaaatttggtcacatccactttcctttacaaacttcaacaacatcaaatggaataatataatat  20706500                                                              <---------DEAR3(2)                                                              <---------RAP2.3(1)                                                              <---------ATERF1(1)                                                             <---------DEAR3(1)                                                            --------->RAP2.6(3)                                                            --------->SPL7                                                  <---------RVE1(1)                                                 <---------ARR11(3)                                                 <---------ARR14(2)                                                 --------->ARR11(3)    ------------>CBF                                     <---------ICU4       ----------->HVH21                 -------->P                              ------->GAMYB  <---------At4g35610 ------>NtERF2              ------>MYB46(1)         ----------->GT1     --------->MYB46(3)  --------->ARR14(2) ------>ZmHOX2a(1)       ------>MYB83        --------->DAG2     --------->WOX13(1)--------->At4g35610<---------ARR14(2)        <---------MYB59 ---------->DOF2<-----------GT1      --------->YAB1       <---------SPL7                <-----------ARR10 --AHL20(2)     --------->MYB52(1)  <------ZmHOX2a(2)   <---------------AtSPL3          --------->ARR11(3) >YAB1 ---------->DOF2  <-----------HVH21   ----------->RAV1(1)--------->ATERF1(1)      <---------ARR11(3)   tggaaaagaaaaagtatataacgaaatgtcaaccatcgatcatgaccagcagatattaatcggacggctcctgtacaattcgatgaagaagacctactct  20706600                                                                                     <-----------ARR10                                                                                     <---------ARR11(1)                                                                                     --------->ARR14(2)                                                                                     ------->TEIL                           <-------GAMYB                                             <---------ARR14(2)                    --------->ICU4                                      --------->ANAC58                *TSS<---------ATHB12                                    --------->ANAC58              <---------WOX13(1)             ----------->RAV1(1)     ----------->HVH21             <------------CBF       --------->HSFB2a(2)            <---------At4g35610   --------->At4g35610         --------->At4g35610   <---------ANAC46                <----------DOF2      <---------ARR14(1)         <---------At4g35610<---------MYB52(1)             <---------ZAT18          <---------CCA1(2)   <---------AHL20(2)<---------ICU4 <---------HSFB2a(2)    --------->ZAT18 <----------DOF2   ctcatttattcagctaattgaaatcatttcgttgtgttttagaacaacaacaaaaaaacagtgccctttcgctcacgctttgagtcgtatctgctctctt  20706700                                      <---------------AtSPL8                                     --------->ARR11(3)                              <------NtERF2                              --------->ALFIN1                            <---------ANAC58                            <---------ANAC58                            <---------ANAC46                           <------NtERF2                           --------->ATERF1(1)                 <----------DOF2     <---------ARR11(3)                 <---------DAG2<---------MYB46(3)         <---------CCA1(2)--------->LBD16        ------>NtERF2    --------->ATERF1(2)       --------->RAP2.3(2)<---------ATERF1(1)       --------->RAP2.3(3)------>NtERF2------>ZmHOX2a(2)       --------->DEAR3(1)<---------DEAR3(1)      --------->RAP2.3(1)<---------ATERF1(2)                                                   ------      --------->ORA47(2) --------->DEAR3(1)         --------->ANAC55(2)                      <-------     --------->LBD16    --------->ATERF1(1)       <-----------RAV1(2)           ------>ZmHOX2a(2)     ------>NtERF2      <---------LBD16----------->GT1                        <---------ARR11(3) ----    --------->ANAC46   <---------RAP2.3(1)  ---------->DOF2                   --------->ARR11(3) <---   cttaatccgccgtctctcactttttcgccggcgtggttagatcgtacaaagctcaggtaatcaaatctatctccgatgttgatctactctgtttctccgg  20706800                                        --------->ANAC46                                     =========================HOX2a_HOX2a                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                    --------->CCA1(2)                                    ==========================HOX2a_HOX2a                                   --------->ARR14(2)                                   <---------ARR11(3)                 <----------DOF2                                   --------->AGP1                    <---------ANAC58                                   --------->ARR11(3)  ------>ZmHOX2a(1)     <---------GLK1(1)       <---------MYB46(3)       --------->TOE2(2)           --------->WOX13(1)   --------->ATHB12         <---------WOX13(1)<----------DOF2        <---------ANAC46  <---------YAB1          --------->ATHB12   <---------ANAC58        <---------ANAC58 --->LBD16               <---------ATHB12--------->LBD16          <---------MYB52(1) --LBD16<-----------GT1  <---------YAB1<---------LBD16--------->TOE1(2)       <---------MYB46(3) ----->ARR14(2)        <---------At4g35610   <---------ANAC58   <-----------RAV1(1) ------ARR14(2)<---------AHL20(2)  <---------AGP1    ------>ZmHOX2a(2)<---------DAG2 --------->YAB1   atttatgatttctctattcaatttccgatgattgttagatctacggggcttttgatcctgcgattactgttgctttttgtttgttaatcagagagaatgt  20706900                                                                                               <-----                                                                                               <-----                                                                                         <---------RVE1(1)            ---------->DOF2           ----------------------->TaNAC69(2)                --------->ARR11(3)  --------->ARR14(2)         <---------At4g35610       <----------DOF2                  <---------ARR11(3)  --------->GLK1(2)          --------->At4g35610 <-----------GT1              <---------YAB1 <-------  <---------ARR14(2)         <---------ZAT2 <----------DOF2            <---------ZAT18<---------TOE2(3)   tgggaatcttgaggcaaagagccatcgatggagcttcggtatgagacttttttactccttttatttgtttcagtgcgattacgattttgagatttttact  20707000                 <---------GLK1(2)                 --------->ARR14(2)         --------->MYB59         <---------TOE2(3)    <---------RVE1(1)                                                    --------->ARR14(2)   <---------ARR11(3)                                                    <---------ARR14(2)   --------->ARR11(3)                      <------MYB46(1)           --------->ANAC58 ----ANAC58      <---------ARR14(2)     >>>>>>>>>CBP60g              --------->ANAC58 ----ANAC58  <-------TEIL               >>>>>>>>>SARD1             <------ZmHOX2a(1)          <------ZmHOX2a(1) ----GT1 <---------TOE1(3)  <---------YAB1 <------MYB83         <------ZmHOX2a(1) <---------MYB46(3)   tgggagatttttaggttcggattttgttttctgattttcgaaatttggtttttgatcagactcttaggaggacgcgattcgcattggtttctgctaggag  20707100  Previous    Next  AGI:  At5g50840.1    Description:  similar to LINC2 (LITTLE NUCLEI2), protein binding [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68982.1); contains domain PTHR16127 (PTHR16127); contains domain PTHR16127:SF5 (PTHR16127:SF5) Range:  from: 20703082    to: 20706144    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g50850.1    Description:  MAB1 (MACCI-BOU); pyruvate dehydrogenase (acetyl-transferring). Identical to Pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor (PDH2) [Arabidopsis Thaliana] (GB:Q38799;GB:Q9LSM8); similar to PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G30120.1); similar to unknown [Populus trichocarpa] (GB:ABK92544.1); similar to Os08g0536000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062360.1); contains InterPro domain Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; (InterPro:IPR009014); contains InterPro domain Transketola Range:  from: 20706616    to: 20710511    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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