Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------YAB1                  --------->AHL20(2)                  <---------AHL20(2)          --------->AHL20(2)         --------->AHL20(1)         <---------AHL20(1)                                   <------MYB83        --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      --------->AHL20(2)    --------->AHL20(2)<---------AHL20(2)                 <---------TOE2(3)       ------>MYB83 <----------DOF2<---------AHL20(2)                 <---------YAB1                ------>MYB46(1) ---------GT1 <---------AHL20(2)                 <-----------GT1         <---------ANAC58 --------GT1 --------->AHL20(1)               <---------ICU4  <------MYB46(1)  <---------MYB59 --AHL20(2)  <---------AHL20(1)              --------->AHL20(2)          <---------ANAC58 ->AHL20(2) <---------AHL20(2)               <---------AHL20(2)          <---------ANAC46     <------   taacttttaaatatatatatttttttaattgtatgagtttctactaaaaaattactattgaagttggtctaagttgcgagaccaaatttttatatgcttt  20702700                                                                           --------->MYB52(2)       -                                                                        <----------DOF2        ------        <-----------GT1   --------->ANAC46  <---------AHL20(2) --------->ZAT6              <---------ATHB12 ----DOF2            --------->REM1(2)--------->YAB1         <-----------GT1      <---------ICU4  <--   cggttcgaattgacatttctctgtgtaaacgaagcatcaataagaatttatcaaacttgaatgtaacaccatttctttagttgatcatttccaaacattt  20702800                                       <---------YAB1                                     --------->YAB1                                     <---------ICU4                                     -------->HAHB4                                    --------->ICU4                                  <---------ICU4                                  --------->YAB1                                 --------->ICU4                             <-------MYC3                             ------->MYC3                            <---------ANAC55(2)                            --------->TGA1a                            ----------->GT1                            --------->O2                            --------->ANAC55(2)                                                     <                            <---------TGA1a                                                         -         <---------AHL20(2) <---------O2--------->YAB1                                              -        --------->AHL20(1)  --------->bZIP60(1)                                                     <        <---------AHL20(1)  <---------ANAC46                         <----------DOF2                -        <---------AHL20(2)  --------->bZIP60(2)                   --------->ZAT6                    -        --------->AHL20(2)  <---------bZIP60(1)                 --------->YAB1                     <-   --------->AHL20(2)     ------------->DYT1                   <---------ATHB12                    <- -------->WOX13(1)      <-----------HVH21           --------->AHL20(2)                             -- --->AHL20(2)        ---------->DOF2<---------YAB1  <---------AHL20(2)         <---------ICU4    ---- -------YAB1         =================bZIP_DOF     --------->AHL20(2)<---------DAG2            <-----   attaatcaaataaaattgaatttcaaagtcacgtgataatgatgatactcaaatttaaaaaaccaataacactttatttcaacatttctatgaagaaatc  20702900      --------->ZAT6    <-----------GT1  <---------YAB1 --------HAHB4                                                                                   ---- -------->YAB1                    ------->GAMYB                           <----------DOF2        <--- ------->ATHB1                   --------->MYB46(3)                     ---------->ID1         <----- ---------ICU4         --------->AHL20(2)                           <------------------------ANAC81 -------->AHL20(2)    <---------WOX13(1)                           <------------------------ANAC81 -- -------->ATHB51    --------->ATHB12                             <---------AHL20(2)            <----- --------ATHB51     <---------AHL20(2)      --------->AHL20(2) <---------RVE1(1)               <----- --------ATHB12    <---------AHL20(2)       <---------AHL20(2)<---------ARR11(3)               ------ ------->ICU4      --------->AHL20(2) ----------->RAV1(1)     --------->ARR11(3)          <---------ZAT6 ----->WOX13(1)   <---------YAB1 <---------MYB52(2)    --------->ICU4  <-----------GT1  <------------CBF ----ATHB12---------->DOF2  --------->YAB1 --------->AHL20(2) <---------GLK1(2)       <---------AHL20(2)   aattattaacacttaaagttattaattgaataacaacgaacaacatttaatttagtcaaaattagattttttttttcttttttttggttttattgttaag  20703000           --------->AHL20(2)           <---------AHL20(2)           --------->AHL20(1)        ------>MYB46(1)        ------>MYB83      <---------MYB59                                        --------->YAB1   <-----------GT1                                         --------->MYB52(1) ----->ARR11(3)            ------->TEIL                    ------>MYB46(1) ------ARR11(3)            --------->GLK1(2)               ------>MYB83      <---------CCA1(1) ----TOE1(3)              <---------ARR14(1)             <---------MYB59     <---------RVE1(1) ------->AHL20(2)     --------->MYB52(1)         <-----------GT1            <---------ARR11(3)     <- ----YAB1  <---------AHL20(1)          <----------ID1   --------->ANAC55(2) <---------AHL20(1)     <- ----TOE2(3)      <-----------GT1   ---------->DOF2    -------->P<------------CBF *TSS            --- ----->ARR10<---------AHL20(2)  ---------->DOF2 <---------AHL20(2)          --------->ARR11(3)    <--   attttataccaaataaaattttacaaacgaatctaaaagaaagaacaaatttaaacttacctatcagaattgttgtaagatatttgggttttcttcgtat  20703100                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                             --------                                                                                           ------>NtERF2                                                                                          --------->ANAC46                                                                                         --------->RAP2.3(1)                                                                                         <------NtERF2                                                                                        ------>NtERF2                                                                                        <---------ERF1                                                                                        <---------RRTF1(1)                                                                                        <---------ATERF1(1)                                                                                        <---------DEAR4(2)                                                                                        <---------RAP2.3(1)                                                                                        <---------ORA47(2)                                                                                       --------->ANAC46                                                                                       <---------RAP2.3(3)                                                                                       <---------RRTF1(3)                                            --------->ARR14(2)                         <---------RAP2.3(2)                                            <---------ARR14(2)                         <---------DEAR3(1)          --------->ARR14(2)         <---------ALFIN1                                 --------->ATERF1(1)          <---------ARR14(2)        <---------ZAT18                                  <---------ATERF1(1)          --------->ARR11(3)        --------->ZAT14                                 --------->DEAR3(1)          --------->AGP1            <---------ZAT14                                 <---------DEAR3(1)         --------->At4g35610       --------->DEAR3(1)                         <---------GLK1(2)   ---      <---------At4g35610        <---------At5g28300                          <---------ARR14(2)  <-- -----MYB46(1)                  <-----------GT1                     <-----------GT1 --------->ETT(2)- -----MYB83<------ZmHOX2a(2)    <---------WRKY38(1)               <----------DOF2   ----------->HVH21 ------>MYB59                  --------->ATERF1(1)            <---------GLK1(2) <-------TEIL<------NtERF2 -------TOE2(3)               <-----------HVH21        --------->ZAT14        --------->ARR14(2)-----   taggtttcatcagatccagactcaaaaaatggagtcaccgcactcgaatttgctccctgaagtcgattctttacccgatggattcgtcgacggcgcaaca  20703200   <------NtERF2  ------>NtERF2  <---------ATERF1(1) --------->RAP2.3(3)                                                                            <---- --------->DEAR3(1)                                                                            <----- --------->RAP2.6(2)                                                                          <------ --------->RAP2.3(2)                                                                          <------ -------->DEAR4(2)                                                                            <------ -------->ATERF1(1)                   ------->GAMYB                                        --------->ARR14(2) -------->RAP2.3(1)                  --------->MYB46(3)                            <---------DAG2  -- --------ATERF1(1)                   <---------MYB52(2)     --------->HSFB2a(2)    <----------DOF2 <- --->RAV1(1)                      <----------ID1          <------ZmHOX2a(2)     --------->ARR11(3) <- ------>ARR14(2)           <------ZmHOX2a(1)           <---------ANAC58  --------->ANAC58  <---------ARR14(2) -------ARR14(2)         --------->LBD16               <---------ANAC58  --------->ANAC58--------->LBD16 -------->ERF1          <---------LBD16           <-----------RAV1(1)  ---------->DOF2 <---------LBD16 -->GAMYB               <-----------RAV1(2)    ------->TEIL <---------HSFB2a(2) <---------ARR11(3) <-   gagccgcctctcaattctcccaagacccaggaagaaacaacaaaccatgaaactgttgcgatcgagaaaacagagaagccaagaacttttccggttccgt  20703300 -----MYB52(1) --GAMYB                                ------>MYB83                                        --------- ---ANAC58                        --------->WRKY12                                          --------- ---ANAC46                        ----------->HVH21                                         <-------- ---ANAC58                      --------->ZAT2   --------->GLK1(2)                          <-------- --------->GT1        ----------->TGA1<---------MYB59                           ---------->DOF2 --------ANAC46     <---------At4g35610 ------>MYB46(1)              <---------ZAT6   ---------->DOF2 --------ANAC58  --------->YAB1 <---------At4g35610   <---------ATHB12    --------->HSFB2a(2) --------ANAC58 --------->ICU4  --------->At4g35610 --------->WOX13(1)    <---------HSFB2a(2)       -   tgtgtgaaactgatggtaatgaagatgacgaagtagctgacctaattcaagaatcaatcaagcttgagttagagttcgagcagaaagaaaaagaagcttc  20703400                                                                                              <XXXXXX   ------>ZmHOX2a(1)                                                     ---------->DOF2  <----------DOF2 >HSFB2a(1)                                                            --------->TOE2(3)  <---------DAG2 >HSFC1(2)                                                <---------ANAC58               <---------ANAC58 -HSFC1(2)                                                <---------ANAC58           <----------DOF2 -HSFB2a(1)                                        <------ZmHOX2a(1)   --------->TOE1(3) <---------ANAC58 ----->ZmHOX2a(1)                           <----------DOF2   <----------DOF2    ---------->ID1   tcctcctatttctcaaacatgtgagtgaaaatgtgaagcttaatttctttataggaatttgcttcttttgtaacctaaagtttgtttctttgctttttgt  20703500                    <---------At4g35610                  <---------WRKY12                  <---------WRKY38(1)                  <---------WRKY45                <-----------HVH21                       --------->ANAC46         <-----------RAV1(2)                       --------->ARR14(2)               <---------YAB1       <-----------HVH21                    <------ZmHOX2a(1)            --------->ANAC58      <---------ZAT6--------->At4g35610   <---------TOE1(3)              --------->ANAC58  <---------ARR11(3) XXXXXXXXXXXXXMIR773B*                    <---------TOE2(3)              --------->ANAC46  --------->ARR11(3)   ttgagttagtgtcagaagggtcaactcaaaattcaaccttgtctaaggaaatggattcactcaaacccaaaaaacaagtcagtattttgatgagttcttc  20703600  Previous    Next  AGI:  At5g50840.1    Description:  similar to LINC2 (LITTLE NUCLEI2), protein binding [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68982.1); contains domain PTHR16127 (PTHR16127); contains domain PTHR16127:SF5 (PTHR16127:SF5) Range:  from: 20703082    to: 20706144    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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