Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->ICU4                                                                  --------->ANAC55(2)                                                                  --------->ANAC58                                                                  --------->ANAC55(1)                                               <---------DEAR3(2) --------->ANAC58            <-----------RAV1(2)           ------->TEIL            ----------->GT1            <-------          <-----------HVH21            --------->MYB46(3)         --------->ANAC46           <-------     --------->GLK1(1)          <---------ARR14(2)     --------->AHL20(1)                   --------- --->ZmHOX2a(2)         ------>ZmHOX2a(1)--------->MYB52(1)       <---------ANAC55(2)   ----------->GT1 -----ARR14(2)<---------At4g35610      <---------MYB52(2) <---------AHL20(2)           --------->DAG2 ---->ARR14(2)--------->At4g35610   --------->TOE1(2)  <---------AHL20(1)       ----------->GT1   tcgactgatacccttcagatgacttcctcttgtatatacgaacgaacgtcggtctaatatataaaaacacgtaaaaattcttgagttaaaaggttactta  20674800                                                                                           <---------YAB1                                                                                        <---------MYB52(1)                                                                                     <---------TOE2(3)                                                                                     <---------YAB1                                                                                    <-----------GT1                                                                                   -------->HAHB4                                                                                   --------->YAB1                                                                                <---------ICU4                                                                                --------->YAB1                                                                               <---------ATHB51                                                                 <----------TaMYB80<---------ICU4                                                       --------->DAG2          <---------AHL20(2)                                                  --------->ANAC58             --------->ICU4    --------->ANAC58                       --------->ANAC58     <---------ARR11(3)--------->ICU4    --------->ANAC58           <<<<<<<<<<<<<<<<<LFY   ---------->DOF2          --------->AHL20(2) --ANAC58                 <---------ZAT18  --------->ANAC58     --------->ARR11(3)<---------YAB1 --ANAC58               --------------->AtSPL8    --------->ANAC58            --------->AHL20(2) >MYB52(2)              <---------------AtSPL8  --------->At4g35610           <---------AHL20(1)   cataagacgaaattgcaaagagttatagagtacttacattggggcaaggcagacgaaaaaggagatgatattccctacaaaataattatcgttatgttag  20674900                                                          --------->AHL20(1)                                                          --------->ARR11(3)                                                          <---------ARR11(3)                                                --------->TOE1(2)                                               <---------ANAC58                                               <---------ANAC58                                              <---------TOE2(3)                                              <---------TOE1(3)                                             <---------DOF5.7(2)                                           --------->DOF5.7(2)                                    <--                                          --------->TOE2(3)                                       ---                                          --------->TOE1(3)            <---------MYB52(2)         ---                                    <---------AHL20(2)  --------->ARR11(3)              ----------->GT1                            ----------------------->TaNAC69(2)    --------->ANAC46      <---------ANAC55(2)                          ------->TEIL   --------->ANAC46--------->CCA1(2)      ---------->DOF2  ---- <-----------GT1    <-------TEIL   --------->AHL20(2)   <---------ARR11(3) --------->ZAT6      ------   aattcacgatgtctcatgtaaatgcatgcattttgaattttatacgttaacgtgagaagatatattctaagtcactaacacaaaaagaataagtaaaaaa  20675000        <------ZmHOX2a(1)      <---------TOE2(2)    --------->TOE2(2)    --------->TOE1(2)               ----------->GT1 -------ARR11(3)                  <---------ANAC46      --------->ARR11(3) ------>AHL20(1)                  <---------ANAC58      <---------ARR11(3)                         -- ------>ARR11(3)                  <---------ANAC58     <---------CCA1(2)                         ---- ----->AHL20(2)                <---------RAP2.6(2) --------->AHL20(2)                        -------- --->AHL20(2) ---------->DOF2 --------->RAP2.6(3)--------->ICU4  ---------->DOF2      ----------->GT1   tatatacctaggatgccaaagacagtagccaagacggcttgtgaaattgccatttttatatctctctcaaagtagtctaatacttgtttagaaaataaag  20675100                   --------->YAB1                                                          --------->YAB1               --------->AHL20(2)                                                         <------ZmHOX2a(2)               <---------AHL20(2)                                                        --------->ARR11(3)     --------->ARR11(3)                                                                  <---------ARR11(3)     --------->GLK1(2)                                                                  <------ZmHOX2a(1)     <---------ARR11(3)                                                         --------->ZAT6 --------->GT1 --------->AHL20(1)                 ---------->DOF2            --------->ZAT14 ------>DOF2   <---------AHL20(1)               <---------YAB1               <---------ZAT14 -->DOF2   <---------YAB1                   ------>ZmHOX2a(1)            xxxxxxxxxxxxxxxx>smallRNA(i)   aaagaaaaatcttctaattaattagaaactctctccctctctcttcctctatgaaagagaatacaagtgaatgaacgagtaaactctacaggatcatact  20675200                                            --------->ICU4                                        --------->ZAT14                                        --------->ZAT18                                        <---------ZAT14          --------->DAG2                                       --------->ALFIN1 <------ZmHOX2a(1)                             --------->ATHB12    <-----------TBP---------->DOF2                            <---------YAB1----------->GT1  <------ZmHOX2a(1)                <---------YAB1<------------CBF   <---------AHL20(2)                    <---------ANAC58     <---------YAB1        *TSS<---------WOX13(1)--------->AHL20(2)                    <---------ANAC58   gagaattatgttcaatgtatgatacaatttttgattgagaagtgtagtgatttatataggaggaagaaaagtgtatcaacttgcaaaatgcgtctgtgag  20675300                                                                 ---------->DOF2                                                            ----------->GT1                                                           ----------->GT1         <---------ARR11(3)                         ---------->DOF2                 --------->ALFIN1---------->DOF2    <--------   tgagagacctagagagagagagagagagaaagaagagtttgaactcaatgggatgtatagtggggaaaaaagaatcaaagagcattatctcttactttac  20675400                                                                   <-----------GT1                                    <---------DAG2               ------>ZmHOX2a(2)                             --------->HSFB2a(1)               <---------ARR11(3)                             <---------HSFB2a(1)               --------->ARR11(3)                             <------MYB83                     --------->YAB1                             <---------HSFC1(2)            <---------ICU4                             <------MYB46(1)               --------->YAB1                             --------->HSFC1(2)           --------->ICU4                        -----                       <---------LBD16       <----------DOF2 --------->ICU4           <---------YAB1 --DOF2         <---------ALFIN1    <----------DOF2     --------->YAB1             <---------AHL20(2)   agttgtatacttcatgccccattgcctcggaaggttcccttttttttctttcacctaagcataatgatcttacccatctatcgattttatgactcatgta  20675500                                                                          --------->ARR14(2)                                                                          <-----------ARR10                                                                          <---------ARR14(2)                                                                         <---------GLK1(1)                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                   --------->CCA1(2)                                                                  <---------ARR14(2)                                                                  --------->AGP1                                             <---------MYB52(1)   <---------ARR11(3)                                   ----------->GT1 <---------AHL20(2)    <---------CCA1(2)                              <---------AHL20(2)  <---------ICU4  --------->ARR11(3)                    <---------ANAC58         --------->DOF5.7(2)  --------->ARR14(2)            -----                    <---------ANAC46        --------->At5g28300   <---------AGP1                <---- -->TEIL            <---------ANAC58       ----------->GT1  <----------DOF2      <---------ICU4 -----   ctcaatttatacatagttttttgtgtgtttatgtaaatggttaaaccgttaatttttatgagcttttagatctgcatatctgaacatgactaagttttct  20675600            ------>ZmHOX2a(1)           <---------------AGL15                                                           <---------ANAC46           --------->TOE2(3)                                                               ----------           =============================================MADS_MADS          <---------AHL20(2)           --------------->AGL15                                           --------->AHL20(2)          ----------------->AGL1        <---------------AGL15       <-----------GT1      <---------ANAC46 ---->HSFB2a(2)                         --------------->AGL15   --------->AHL20(2)       ----------->GT1 -----HSFB2a(2)             <-----------HVH21    --------->YAB1 <---------AHL20(1)     ------->TEIL ---->HSFC1(1)   --------->YAB1   <---------MYB46(3)            --------->AHL20(1)<---------AtLEC2   cgaatactagtttcctcaagaagaatgtatggtcagtggtcactctatatagcataatacgagtcatatattactgttttattagcatgaatcgtgtata  20675700  Previous    Next  AGI:  At5g50790.1    Description:  nodulin MtN3 family protein. similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT5G13170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68342.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71371.1); contains InterPro domain MtN3 and saliva related transmembrane protein (InterPro:IPR004316) Range:  from: 20673479    to: 20675227    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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